Wall clock time and date at job start Tue Mar 31 2020 06:23:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46501 * 109.47425 * 2 1 4 4 C 1.46505 * 119.99924 * 74.70489 * 3 2 1 5 5 C 1.50694 * 109.47268 * 90.00274 * 4 3 2 6 6 H 1.07999 * 119.99747 * 359.97438 * 5 4 3 7 7 C 1.37872 * 120.00271 * 179.97438 * 5 4 3 8 8 N 1.31513 * 119.99842 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 120.00235 * 179.97438 * 7 5 4 10 10 H 1.48499 * 109.47084 * 89.99829 * 9 7 5 11 11 H 1.48497 * 109.47456 * 209.99762 * 9 7 5 12 12 H 1.48503 * 109.47194 * 330.00240 * 9 7 5 13 13 C 1.34771 * 119.99874 * 254.70774 * 3 2 1 14 14 O 1.21554 * 119.99657 * 183.48809 * 13 3 2 15 15 C 1.47863 * 120.00033 * 3.49061 * 13 3 2 16 16 C 1.39666 * 120.07960 * 23.15146 * 15 13 3 17 17 C 1.38044 * 120.14375 * 179.74742 * 16 15 13 18 18 C 1.38115 * 120.29246 * 0.55827 * 17 16 15 19 19 C 1.39604 * 120.15180 * 359.70029 * 18 17 16 20 20 C 1.43198 * 120.07379 * 179.97438 * 19 18 17 21 21 C 7.50506 * 118.92949 * 280.71305 * 2 1 3 22 22 C 8.94609 * 120.92531 * 281.46035 * 2 1 3 23 23 O 1.42896 * 109.47227 * 342.60727 * 22 21 20 24 24 C 1.39309 * 119.85860 * 0.02562 * 19 18 17 25 25 H 1.08995 * 109.47021 * 300.00540 * 1 2 3 26 26 H 1.09005 * 109.46734 * 60.00076 * 1 2 3 27 27 H 1.08994 * 109.47140 * 180.02562 * 1 2 3 28 28 H 1.08995 * 109.47460 * 239.99156 * 2 1 3 29 29 H 1.09005 * 109.46842 * 119.99380 * 2 1 3 30 30 H 1.09000 * 109.47363 * 329.99914 * 4 3 2 31 31 H 1.09001 * 109.47199 * 210.00187 * 4 3 2 32 32 H 0.97003 * 119.99967 * 180.02562 * 8 7 5 33 33 H 1.08007 * 119.92840 * 0.02562 * 16 15 13 34 34 H 1.07995 * 119.85243 * 180.25922 * 17 16 15 35 35 H 1.07997 * 119.92069 * 179.72032 * 18 17 16 36 36 H 1.09005 * 109.47164 * 102.61127 * 22 21 20 37 37 H 1.08994 * 109.47244 * 222.60515 * 22 21 20 38 38 H 0.96699 * 114.00399 * 179.97438 * 23 22 21 39 39 H 1.07995 * 120.15242 * 180.02562 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 1.9471 2.1834 1.2238 5 6 3.2147 2.0016 2.0182 6 1 3.9952 1.3531 1.6487 7 6 3.3780 2.6632 3.2168 8 7 2.4278 3.4534 3.6665 9 14 4.9490 2.4373 4.2018 10 1 5.9444 3.4584 3.7872 11 1 4.6530 2.5936 5.6486 12 1 5.4988 1.0805 3.9527 13 6 2.5333 1.9139 -1.1258 14 8 2.9965 3.0376 -1.1098 15 6 2.5347 1.1313 -2.3804 16 6 1.6192 0.0916 -2.5580 17 6 1.6159 -0.6364 -3.7308 18 6 2.5241 -0.3499 -4.7312 19 6 3.4482 0.6832 -4.5646 20 6 4.3894 0.9784 -5.6026 21 6 5.1605 1.2210 -6.4541 22 6 6.1276 1.5248 -7.5213 23 8 7.1044 0.4841 -7.5893 24 6 3.4534 1.4256 -3.3858 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5139 -0.8901 27 1 -0.3633 -1.0276 0.0005 28 1 1.8934 -0.5139 -0.8898 29 1 1.8933 -0.5138 0.8901 30 1 1.0945 1.8601 1.8211 31 1 1.8297 3.2351 0.9626 32 1 2.5429 3.9191 4.5096 33 1 0.9093 -0.1404 -1.7778 34 1 0.9032 -1.4366 -3.8648 35 1 2.5192 -0.9263 -5.6445 36 1 5.6054 1.5960 -8.4754 37 1 6.6209 2.4725 -7.3057 38 1 7.7752 0.6182 -8.2728 39 1 4.1658 2.2261 -3.2521 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042454050.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:23:48 Heat of formation + Delta-G solvation = -4.304422 kcal Electronic energy + Delta-G solvation = -21474.385882 eV Core-core repulsion = 18155.666225 eV Total energy + Delta-G solvation = -3318.719657 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 287.131 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.60677 -39.44640 -38.00090 -37.36927 -35.31966 -34.66442 -32.45119 -32.19057 -31.32772 -29.22770 -27.72613 -25.70503 -24.72238 -23.86827 -23.33686 -20.84059 -19.16005 -18.62304 -18.48505 -17.99494 -17.33440 -17.18765 -16.51404 -16.14051 -15.97997 -15.87255 -15.52295 -15.03298 -14.74010 -14.51503 -14.31149 -14.06926 -13.55744 -13.34419 -13.22056 -13.12605 -12.85222 -12.66692 -12.52679 -12.35343 -12.23306 -12.11695 -11.88655 -11.73558 -11.62417 -10.78806 -10.68487 -10.66562 -10.10303 -9.57271 -9.50792 -8.25821 -6.40355 -0.34356 -0.00673 1.33627 1.37090 1.42428 1.46664 1.52221 2.01003 2.22032 2.38731 2.80285 2.96401 3.03732 3.49637 3.84124 3.85858 3.92685 4.07651 4.19432 4.27941 4.30853 4.37448 4.46400 4.55088 4.56428 4.72876 4.87972 4.92731 4.95249 5.03269 5.12813 5.25949 5.27619 5.31723 5.41685 5.53230 5.75470 5.81523 6.02548 6.35773 6.62998 6.69566 6.89590 7.20801 7.36065 8.81526 Molecular weight = 287.13amu Principal moments of inertia in cm(-1) A = 0.016304 B = 0.003740 C = 0.003218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1716.957470 B = 7484.591103 C = 8699.888486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.064 3.936 3 N -0.590 5.590 4 C 0.262 3.738 5 C -0.546 4.546 6 H 0.049 0.951 7 C 0.009 3.991 8 N -0.926 5.926 9 Si 0.967 3.033 10 H -0.282 1.282 11 H -0.270 1.270 12 H -0.263 1.263 13 C 0.534 3.466 14 O -0.597 6.597 15 C -0.140 4.140 16 C -0.106 4.106 17 C -0.107 4.107 18 C -0.065 4.065 19 C -0.010 4.010 20 C -0.149 4.149 21 C -0.168 4.168 22 C 0.190 3.810 23 O -0.592 6.592 24 C -0.060 4.060 25 H 0.047 0.953 26 H 0.068 0.932 27 H 0.110 0.890 28 H 0.126 0.874 29 H 0.070 0.930 30 H 0.034 0.966 31 H -0.004 1.004 32 H 0.268 0.732 33 H 0.184 0.816 34 H 0.185 0.815 35 H 0.161 0.839 36 H 0.106 0.894 37 H 0.094 0.906 38 H 0.411 0.589 39 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.859 -12.452 -21.902 25.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.057 4.057 3 N -0.320 5.320 4 C 0.141 3.859 5 C -0.585 4.585 6 H 0.067 0.933 7 C -0.190 4.190 8 N -0.566 5.566 9 Si 0.791 3.209 10 H -0.208 1.208 11 H -0.195 1.195 12 H -0.187 1.187 13 C 0.323 3.677 14 O -0.480 6.480 15 C -0.143 4.143 16 C -0.123 4.123 17 C -0.124 4.124 18 C -0.083 4.083 19 C -0.011 4.011 20 C -0.150 4.150 21 C -0.168 4.168 22 C 0.114 3.886 23 O -0.403 6.403 24 C -0.080 4.080 25 H 0.066 0.934 26 H 0.087 0.913 27 H 0.129 0.871 28 H 0.143 0.857 29 H 0.089 0.911 30 H 0.051 0.949 31 H 0.015 0.985 32 H 0.077 0.923 33 H 0.200 0.800 34 H 0.203 0.797 35 H 0.178 0.822 36 H 0.124 0.876 37 H 0.112 0.888 38 H 0.263 0.737 39 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -1.041 -12.010 -21.214 24.400 hybrid contribution 1.299 1.129 0.700 1.858 sum 0.257 -10.881 -20.513 23.222 Atomic orbital electron populations 1.22247 0.93618 1.04661 1.02346 1.22732 0.96219 0.81664 1.05094 1.48152 1.58905 1.14807 1.10105 1.18774 0.96419 0.89853 0.80856 1.21681 1.03218 1.28151 1.05406 0.93285 1.25835 1.00275 0.94350 0.98507 1.70039 1.34844 1.29900 1.21805 0.85428 0.78848 0.78790 0.77825 1.20776 1.19486 1.18740 1.18965 0.77939 0.86134 0.84620 1.90700 1.48513 1.22303 1.86457 1.19818 1.00852 0.99760 0.93856 1.22909 0.97651 0.92043 0.99726 1.21580 0.99113 1.00607 0.91089 1.21782 0.91988 0.94043 1.00488 1.15905 0.96201 0.98658 0.90291 1.19516 0.98292 1.00526 0.96632 1.22791 0.96990 0.99976 0.97061 1.19029 0.86234 0.90532 0.92774 1.86488 1.43319 1.47794 1.62681 1.21177 0.97066 0.97801 0.91928 0.93427 0.91290 0.87096 0.85709 0.91140 0.94852 0.98544 0.92273 0.79950 0.79734 0.82167 0.87640 0.88837 0.73657 0.87445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.15 9.05 71.98 0.65 -3.49 16 2 C 0.06 2.02 5.59 86.38 0.48 2.50 16 3 N -0.59 -26.70 2.50 -829.54 -2.07 -28.77 16 4 C 0.26 14.66 5.08 85.63 0.43 15.10 16 5 C -0.55 -32.81 9.39 25.60 0.24 -32.57 16 6 H 0.05 2.95 7.81 -2.91 -0.02 2.93 16 7 C 0.01 0.56 5.46 84.65 0.46 1.02 16 8 N -0.93 -57.08 13.29 21.45 0.28 -56.79 16 9 Si 0.97 46.29 29.54 68.60 2.03 48.32 16 10 H -0.28 -13.54 7.11 99.48 0.71 -12.83 16 11 H -0.27 -12.18 7.11 99.48 0.71 -11.48 16 12 H -0.26 -12.04 7.11 99.48 0.71 -11.33 16 13 C 0.53 25.12 7.51 86.79 0.65 25.77 16 14 O -0.60 -34.44 16.19 -3.88 -0.06 -34.50 16 15 C -0.14 -4.97 5.60 -20.12 -0.11 -5.08 16 16 C -0.11 -2.59 7.50 22.57 0.17 -2.42 16 17 C -0.11 -1.83 10.02 22.19 0.22 -1.61 16 18 C -0.07 -1.31 9.74 22.57 0.22 -1.09 16 19 C -0.01 -0.30 5.72 -21.45 -0.12 -0.42 16 20 C -0.15 -4.27 13.23 30.01 0.40 -3.88 16 21 C -0.17 -4.18 13.73 31.12 0.43 -3.75 16 22 C 0.19 2.76 7.52 70.17 0.53 3.29 16 23 O -0.59 -9.29 13.62 -148.98 -2.03 -11.32 16 24 C -0.06 -2.13 9.29 22.79 0.21 -1.92 16 25 H 0.05 1.39 7.41 -2.39 -0.02 1.38 16 26 H 0.07 1.55 7.03 -2.38 -0.02 1.53 16 27 H 0.11 1.71 8.14 -2.39 -0.02 1.69 16 28 H 0.13 3.21 4.01 -2.99 -0.01 3.20 16 29 H 0.07 2.34 8.14 -2.38 -0.02 2.32 16 30 H 0.03 1.85 7.30 -2.39 -0.02 1.83 16 31 H 0.00 -0.23 7.47 -2.39 -0.02 -0.25 16 32 H 0.27 15.43 8.31 -92.71 -0.77 14.66 16 33 H 0.18 3.83 2.35 -2.91 -0.01 3.82 16 34 H 0.19 1.38 8.06 -2.91 -0.02 1.36 16 35 H 0.16 2.21 8.06 -2.91 -0.02 2.19 16 36 H 0.11 0.85 8.14 -2.38 -0.02 0.83 16 37 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 38 H 0.41 1.45 9.12 -74.06 -0.68 0.78 16 39 H 0.11 4.27 7.82 -2.91 -0.02 4.25 16 Total: -1.00 -87.18 338.19 3.43 -83.76 By element: Atomic # 1 Polarization: 7.45 SS G_CDS: 0.42 Total: 7.87 kcal Atomic # 6 Polarization: -13.41 SS G_CDS: 4.86 Total: -8.55 kcal Atomic # 7 Polarization: -83.78 SS G_CDS: -1.79 Total: -85.56 kcal Atomic # 8 Polarization: -43.74 SS G_CDS: -2.09 Total: -45.83 kcal Atomic # 14 Polarization: 46.29 SS G_CDS: 2.03 Total: 48.32 kcal Total: -87.18 3.43 -83.76 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042454050.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.451 kcal (2) G-P(sol) polarization free energy of solvation -87.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.755 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds