Wall clock time and date at job start Tue Mar 31 2020 06:23:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46899 * 109.47203 * 2 1 4 4 C 1.46893 * 110.99915 * 299.43213 * 3 2 1 5 5 C 1.50708 * 109.47216 * 293.96257 * 4 3 2 6 6 H 1.08002 * 119.99843 * 355.08422 * 5 4 3 7 7 C 1.37875 * 120.00272 * 175.08140 * 5 4 3 8 8 N 1.31518 * 119.99731 * 359.97438 * 7 5 4 9 9 Si 1.86792 * 120.00228 * 180.02562 * 7 5 4 10 10 H 1.48502 * 109.47477 * 59.99404 * 9 7 5 11 11 H 1.48499 * 109.47252 * 179.97438 * 9 7 5 12 12 H 1.48509 * 109.46902 * 299.99704 * 9 7 5 13 13 C 1.46901 * 110.99757 * 63.38682 * 3 2 1 14 14 C 1.50701 * 109.47289 * 66.04663 * 13 3 2 15 15 C 1.38264 * 119.99857 * 270.21060 * 14 13 3 16 16 C 1.38207 * 119.99753 * 180.25478 * 15 14 13 17 17 C 1.38251 * 120.00404 * 359.50868 * 16 15 14 18 18 C 1.38216 * 119.99978 * 0.28345 * 17 16 15 19 19 C 1.50692 * 120.00347 * 179.97438 * 18 17 16 20 20 F 1.39905 * 109.47168 * 359.97438 * 19 18 17 21 21 F 1.39903 * 109.47441 * 119.99513 * 19 18 17 22 22 F 1.39901 * 109.47287 * 239.99675 * 19 18 17 23 23 C 1.38209 * 120.00033 * 89.99512 * 14 13 3 24 24 H 1.09004 * 109.47254 * 61.28155 * 1 2 3 25 25 H 1.09004 * 109.47361 * 181.27965 * 1 2 3 26 26 H 1.08997 * 109.47072 * 301.27915 * 1 2 3 27 27 H 1.09000 * 109.46796 * 239.99767 * 2 1 3 28 28 H 1.09004 * 109.46927 * 120.00421 * 2 1 3 29 29 H 1.08992 * 109.47327 * 53.96320 * 4 3 2 30 30 H 1.09005 * 109.46776 * 173.96948 * 4 3 2 31 31 H 0.96999 * 119.99870 * 180.02562 * 8 7 5 32 32 H 1.08996 * 109.46937 * 306.04547 * 13 3 2 33 33 H 1.08999 * 109.46601 * 186.04338 * 13 3 2 34 34 H 1.08000 * 120.00091 * 0.04490 * 15 14 13 35 35 H 1.08008 * 119.99954 * 179.78906 * 16 15 14 36 36 H 1.07995 * 120.00694 * 180.25356 * 17 16 15 37 37 H 1.07996 * 120.00380 * 0.02562 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.5598 2.1059 -1.1944 5 6 2.1933 1.5014 -2.4210 6 1 2.9299 0.7183 -2.3181 7 6 1.8325 1.9481 -3.6745 8 7 0.9351 2.9013 -3.7998 9 14 2.6171 1.1984 -5.1948 10 1 2.3265 -0.2573 -5.2353 11 1 2.0620 1.8475 -6.4096 12 1 4.0865 1.4086 -5.1483 13 6 1.6159 2.0860 1.2262 14 6 2.3055 1.4620 2.4119 15 6 1.7079 0.4131 3.0860 16 6 2.3379 -0.1558 4.1767 17 6 3.5703 0.3172 4.5876 18 6 4.1697 1.3629 3.9111 19 6 5.5127 1.8789 4.3593 20 9 5.9463 1.1474 5.4702 21 9 6.4371 1.7388 3.3186 22 9 5.4015 3.2298 4.7055 23 6 3.5373 1.9352 2.8229 24 1 -0.3634 0.4938 -0.9013 25 1 -0.3634 -1.0274 0.0230 26 1 -0.3633 0.5336 0.8783 27 1 1.8932 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 0.4752 2.0288 -1.2702 30 1 1.8451 3.1551 -1.1177 31 1 0.6810 3.2153 -4.6817 32 1 0.5360 2.0072 1.3509 33 1 1.8976 3.1365 1.1535 34 1 0.7472 0.0405 2.7623 35 1 1.8695 -0.9729 4.7054 36 1 4.0644 -0.1300 5.4373 37 1 4.0055 2.7524 2.2945 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042454438.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:23:27 Heat of formation + Delta-G solvation = -125.203987 kcal Electronic energy + Delta-G solvation = -22770.805044 eV Core-core repulsion = 18904.986048 eV Total energy + Delta-G solvation = -3865.818996 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 287.119 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -50.16632 -47.70701 -47.60123 -39.66429 -37.09559 -32.90322 -31.98818 -31.63968 -29.43316 -27.23921 -26.03196 -24.82399 -23.25021 -22.29286 -21.34106 -19.45727 -18.47816 -18.36989 -17.89198 -16.32628 -16.21233 -15.58744 -15.08366 -14.77332 -14.53073 -14.42213 -14.32433 -14.07594 -13.98991 -13.85388 -13.78594 -13.38672 -13.09071 -12.64200 -12.50853 -12.37762 -11.88085 -11.68900 -11.29690 -11.23905 -11.00803 -10.93111 -10.69398 -10.52866 -10.11463 -9.82079 -9.27930 -9.17031 -8.82266 -8.44603 -7.25352 -6.04788 -4.05926 0.94925 1.28052 2.65675 3.32460 3.36690 3.39631 3.48477 3.71497 4.01572 4.40795 4.43739 4.78496 4.81336 5.00365 5.09984 5.28782 5.31250 5.34623 5.51450 5.73502 5.79493 5.85908 5.97627 6.06290 6.10917 6.16642 6.26924 6.37231 6.59225 6.65457 6.79059 6.87158 7.25372 7.38120 7.77382 8.04411 8.14167 8.50349 9.01742 9.58407 11.05778 Molecular weight = 287.12amu Principal moments of inertia in cm(-1) A = 0.020611 B = 0.004094 C = 0.003703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1358.164066 B = 6837.405256 C = 7558.811591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.058 3.942 3 N -0.529 5.529 4 C 0.189 3.811 5 C -0.506 4.506 6 H 0.062 0.938 7 C 0.056 3.944 8 N -0.899 5.899 9 Si 0.897 3.103 10 H -0.277 1.277 11 H -0.288 1.288 12 H -0.276 1.276 13 C 0.082 3.918 14 C -0.059 4.059 15 C -0.083 4.083 16 C -0.124 4.124 17 C -0.084 4.084 18 C -0.187 4.187 19 C 0.509 3.491 20 F -0.182 7.182 21 F -0.175 7.175 22 F -0.179 7.179 23 C -0.050 4.050 24 H 0.071 0.929 25 H 0.047 0.953 26 H 0.043 0.957 27 H 0.081 0.919 28 H 0.053 0.947 29 H 0.005 0.995 30 H 0.025 0.975 31 H 0.262 0.738 32 H 0.043 0.957 33 H 0.079 0.921 34 H 0.129 0.871 35 H 0.130 0.870 36 H 0.132 0.868 37 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.880 -4.398 17.647 18.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.249 4.249 2 C -0.071 4.071 3 N -0.253 5.253 4 C 0.064 3.936 5 C -0.545 4.545 6 H 0.080 0.920 7 C -0.145 4.145 8 N -0.539 5.539 9 Si 0.725 3.275 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.202 1.202 13 C -0.046 4.046 14 C -0.059 4.059 15 C -0.102 4.102 16 C -0.142 4.142 17 C -0.102 4.102 18 C -0.188 4.188 19 C 0.455 3.545 20 F -0.163 7.163 21 F -0.156 7.156 22 F -0.160 7.160 23 C -0.069 4.069 24 H 0.090 0.910 25 H 0.066 0.934 26 H 0.062 0.938 27 H 0.100 0.900 28 H 0.072 0.928 29 H 0.022 0.978 30 H 0.043 0.957 31 H 0.071 0.929 32 H 0.061 0.939 33 H 0.097 0.903 34 H 0.147 0.853 35 H 0.148 0.852 36 H 0.150 0.850 37 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 3.341 -4.266 17.478 18.299 hybrid contribution -0.266 -0.231 -0.836 0.907 sum 3.074 -4.496 16.643 17.511 Atomic orbital electron populations 1.22408 0.99386 1.00919 1.02151 1.22022 0.92081 0.91446 1.01535 1.62407 1.59339 1.02025 1.01493 1.19811 0.94604 0.93589 0.85581 1.21092 1.23010 1.20465 0.89888 0.91968 1.24963 0.95218 0.95216 0.99083 1.69943 1.31887 1.28370 1.23681 0.86580 0.79686 0.79248 0.82020 1.20308 1.21388 1.20162 1.21112 0.96624 0.98201 0.88655 1.19993 0.94181 0.95610 0.96166 1.21385 1.00007 0.94613 0.94162 1.21069 0.95040 1.00595 0.97505 1.20890 0.95502 0.94715 0.99098 1.19915 0.94690 1.02446 1.01732 1.18346 0.86009 0.75370 0.74786 1.93140 1.91167 1.77450 1.54553 1.93238 1.68816 1.95462 1.58101 1.93208 1.96292 1.34222 1.92291 1.20805 0.94093 0.98760 0.93203 0.91036 0.93394 0.93762 0.90029 0.92816 0.97757 0.95655 0.92883 0.93946 0.90269 0.85312 0.85197 0.84978 0.84776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.19 9.15 37.16 0.34 -2.85 16 2 C 0.06 1.06 5.51 -3.83 -0.02 1.04 16 3 N -0.53 -10.75 4.69 -237.52 -1.11 -11.87 16 4 C 0.19 4.67 4.49 -4.98 -0.02 4.65 16 5 C -0.51 -13.79 8.41 -34.44 -0.29 -14.08 16 6 H 0.06 1.70 7.30 -52.49 -0.38 1.32 16 7 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 8 N -0.90 -26.11 13.29 55.43 0.74 -25.38 16 9 Si 0.90 21.39 29.54 -169.99 -5.02 16.37 16 10 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 11 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 12 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 13 C 0.08 1.37 4.93 -4.97 -0.02 1.34 16 14 C -0.06 -0.85 4.89 -104.62 -0.51 -1.36 16 15 C -0.08 -1.02 7.91 -39.58 -0.31 -1.33 16 16 C -0.12 -1.31 10.05 -39.59 -0.40 -1.71 16 17 C -0.08 -0.93 9.43 -39.58 -0.37 -1.31 16 18 C -0.19 -2.40 5.37 -104.62 -0.56 -2.96 16 19 C 0.51 6.44 3.32 36.00 0.12 6.55 16 20 F -0.18 -2.15 15.97 2.25 0.04 -2.11 16 21 F -0.17 -2.43 17.24 2.25 0.04 -2.39 16 22 F -0.18 -2.31 17.24 2.25 0.04 -2.27 16 23 C -0.05 -0.71 9.26 -39.58 -0.37 -1.07 16 24 H 0.07 1.43 6.36 -51.93 -0.33 1.10 16 25 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 26 H 0.04 0.67 5.72 -51.93 -0.30 0.37 16 27 H 0.08 1.67 6.94 -51.93 -0.36 1.31 16 28 H 0.05 0.87 5.91 -51.93 -0.31 0.57 16 29 H 0.00 0.12 6.04 -51.93 -0.31 -0.19 16 30 H 0.03 0.67 7.93 -51.93 -0.41 0.26 16 31 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 32 H 0.04 0.68 6.03 -51.93 -0.31 0.37 16 33 H 0.08 1.32 7.87 -51.93 -0.41 0.92 16 34 H 0.13 1.44 7.29 -52.49 -0.38 1.06 16 35 H 0.13 1.01 8.06 -52.48 -0.42 0.59 16 36 H 0.13 1.21 7.16 -52.49 -0.38 0.83 16 37 H 0.13 1.90 8.06 -52.49 -0.42 1.47 16 LS Contribution 314.55 15.07 4.74 4.74 Total: -1.00 -28.70 314.55 -7.35 -36.05 By element: Atomic # 1 Polarization: 2.76 SS G_CDS: -4.29 Total: -1.53 kcal Atomic # 6 Polarization: -9.10 SS G_CDS: -2.52 Total: -11.62 kcal Atomic # 7 Polarization: -36.87 SS G_CDS: -0.38 Total: -37.24 kcal Atomic # 9 Polarization: -6.88 SS G_CDS: 0.11 Total: -6.77 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -28.70 -7.35 -36.05 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042454438.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.155 kcal (2) G-P(sol) polarization free energy of solvation -28.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.049 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds