Wall clock time and date at job start Tue Mar 31 2020 06:23:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46899 * 109.47203 * 2 1 4 4 C 1.46893 * 110.99915 * 299.43213 * 3 2 1 5 5 C 1.50708 * 109.47216 * 293.96257 * 4 3 2 6 6 H 1.08002 * 119.99843 * 355.08422 * 5 4 3 7 7 C 1.37875 * 120.00272 * 175.08140 * 5 4 3 8 8 N 1.31518 * 119.99731 * 359.97438 * 7 5 4 9 9 Si 1.86792 * 120.00228 * 180.02562 * 7 5 4 10 10 H 1.48502 * 109.47477 * 59.99404 * 9 7 5 11 11 H 1.48499 * 109.47252 * 179.97438 * 9 7 5 12 12 H 1.48509 * 109.46902 * 299.99704 * 9 7 5 13 13 C 1.46901 * 110.99757 * 63.38682 * 3 2 1 14 14 C 1.50701 * 109.47289 * 66.04663 * 13 3 2 15 15 C 1.38264 * 119.99857 * 270.21060 * 14 13 3 16 16 C 1.38207 * 119.99753 * 180.25478 * 15 14 13 17 17 C 1.38251 * 120.00404 * 359.50868 * 16 15 14 18 18 C 1.38216 * 119.99978 * 0.28345 * 17 16 15 19 19 C 1.50692 * 120.00347 * 179.97438 * 18 17 16 20 20 F 1.39905 * 109.47168 * 359.97438 * 19 18 17 21 21 F 1.39903 * 109.47441 * 119.99513 * 19 18 17 22 22 F 1.39901 * 109.47287 * 239.99675 * 19 18 17 23 23 C 1.38209 * 120.00033 * 89.99512 * 14 13 3 24 24 H 1.09004 * 109.47254 * 61.28155 * 1 2 3 25 25 H 1.09004 * 109.47361 * 181.27965 * 1 2 3 26 26 H 1.08997 * 109.47072 * 301.27915 * 1 2 3 27 27 H 1.09000 * 109.46796 * 239.99767 * 2 1 3 28 28 H 1.09004 * 109.46927 * 120.00421 * 2 1 3 29 29 H 1.08992 * 109.47327 * 53.96320 * 4 3 2 30 30 H 1.09005 * 109.46776 * 173.96948 * 4 3 2 31 31 H 0.96999 * 119.99870 * 180.02562 * 8 7 5 32 32 H 1.08996 * 109.46937 * 306.04547 * 13 3 2 33 33 H 1.08999 * 109.46601 * 186.04338 * 13 3 2 34 34 H 1.08000 * 120.00091 * 0.04490 * 15 14 13 35 35 H 1.08008 * 119.99954 * 179.78906 * 16 15 14 36 36 H 1.07995 * 120.00694 * 180.25356 * 17 16 15 37 37 H 1.07996 * 120.00380 * 0.02562 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.5598 2.1059 -1.1944 5 6 2.1933 1.5014 -2.4210 6 1 2.9299 0.7183 -2.3181 7 6 1.8325 1.9481 -3.6745 8 7 0.9351 2.9013 -3.7998 9 14 2.6171 1.1984 -5.1948 10 1 2.3265 -0.2573 -5.2353 11 1 2.0620 1.8475 -6.4096 12 1 4.0865 1.4086 -5.1483 13 6 1.6159 2.0860 1.2262 14 6 2.3055 1.4620 2.4119 15 6 1.7079 0.4131 3.0860 16 6 2.3379 -0.1558 4.1767 17 6 3.5703 0.3172 4.5876 18 6 4.1697 1.3629 3.9111 19 6 5.5127 1.8789 4.3593 20 9 5.9463 1.1474 5.4702 21 9 6.4371 1.7388 3.3186 22 9 5.4015 3.2298 4.7055 23 6 3.5373 1.9352 2.8229 24 1 -0.3634 0.4938 -0.9013 25 1 -0.3634 -1.0274 0.0230 26 1 -0.3633 0.5336 0.8783 27 1 1.8932 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 0.4752 2.0288 -1.2702 30 1 1.8451 3.1551 -1.1177 31 1 0.6810 3.2153 -4.6817 32 1 0.5360 2.0072 1.3509 33 1 1.8976 3.1365 1.1535 34 1 0.7472 0.0405 2.7623 35 1 1.8695 -0.9729 4.7054 36 1 4.0644 -0.1300 5.4373 37 1 4.0055 2.7524 2.2945 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042454438.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:23:26 Heat of formation + Delta-G solvation = -141.034263 kcal Electronic energy + Delta-G solvation = -22771.491496 eV Core-core repulsion = 18904.986048 eV Total energy + Delta-G solvation = -3866.505448 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 287.119 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -51.17691 -48.69335 -48.64614 -40.73399 -38.56906 -34.83866 -33.22378 -32.66647 -30.98458 -28.96190 -27.03154 -26.30133 -24.99216 -23.33476 -22.54020 -20.93956 -19.49874 -19.37037 -18.95963 -18.30671 -17.27637 -16.94996 -16.72542 -16.22003 -15.70371 -15.55474 -15.49152 -15.25899 -15.08826 -14.89515 -14.81116 -14.62471 -14.57295 -13.98694 -13.71670 -13.61085 -13.38344 -13.09409 -12.92783 -12.75118 -12.58347 -12.48934 -12.19363 -12.06520 -11.78077 -11.47589 -11.25596 -10.58395 -10.13180 -9.85926 -8.89696 -8.17866 -6.26859 -0.01874 0.31043 1.41311 1.43614 1.51429 1.65967 2.40056 2.50999 2.72505 3.02864 3.14934 3.39686 3.52338 3.78799 3.90597 4.08325 4.21167 4.29071 4.34031 4.47156 4.56256 4.60109 4.74872 4.83732 4.93710 4.98530 5.04605 5.21031 5.25180 5.32892 5.40800 5.52599 5.56479 5.69031 5.84137 6.09495 6.37812 6.66543 6.89529 7.42406 8.92184 Molecular weight = 287.12amu Principal moments of inertia in cm(-1) A = 0.020611 B = 0.004094 C = 0.003703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1358.164066 B = 6837.405256 C = 7558.811591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.060 3.940 3 N -0.541 5.541 4 C 0.205 3.795 5 C -0.519 4.519 6 H 0.058 0.942 7 C 0.005 3.995 8 N -0.933 5.933 9 Si 0.962 3.038 10 H -0.268 1.268 11 H -0.284 1.284 12 H -0.272 1.272 13 C 0.086 3.914 14 C -0.076 4.076 15 C -0.083 4.083 16 C -0.111 4.111 17 C -0.077 4.077 18 C -0.194 4.194 19 C 0.511 3.489 20 F -0.174 7.174 21 F -0.185 7.185 22 F -0.183 7.183 23 C -0.066 4.066 24 H 0.032 0.968 25 H 0.075 0.925 26 H 0.063 0.937 27 H 0.055 0.945 28 H 0.082 0.918 29 H -0.014 1.014 30 H -0.004 1.004 31 H 0.263 0.737 32 H 0.050 0.950 33 H 0.066 0.934 34 H 0.144 0.856 35 H 0.169 0.831 36 H 0.158 0.842 37 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.932 -6.590 19.312 20.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.068 4.068 3 N -0.264 5.264 4 C 0.079 3.921 5 C -0.557 4.557 6 H 0.076 0.924 7 C -0.193 4.193 8 N -0.574 5.574 9 Si 0.787 3.213 10 H -0.193 1.193 11 H -0.209 1.209 12 H -0.197 1.197 13 C -0.041 4.041 14 C -0.076 4.076 15 C -0.101 4.101 16 C -0.129 4.129 17 C -0.095 4.095 18 C -0.196 4.196 19 C 0.457 3.543 20 F -0.155 7.155 21 F -0.167 7.167 22 F -0.164 7.164 23 C -0.085 4.085 24 H 0.051 0.949 25 H 0.093 0.907 26 H 0.082 0.918 27 H 0.073 0.927 28 H 0.100 0.900 29 H 0.003 0.997 30 H 0.014 0.986 31 H 0.072 0.928 32 H 0.068 0.932 33 H 0.085 0.915 34 H 0.161 0.839 35 H 0.186 0.814 36 H 0.175 0.825 37 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 3.399 -6.468 19.166 20.511 hybrid contribution -0.265 0.443 -1.229 1.333 sum 3.134 -6.025 17.937 19.179 Atomic orbital electron populations 1.22286 0.98047 1.02430 1.01051 1.22012 0.93172 0.90047 1.01569 1.62254 1.59896 1.02938 1.01334 1.19423 0.93139 0.92336 0.87240 1.21395 1.22883 1.20293 0.91174 0.92415 1.25804 0.95672 0.95579 1.02211 1.70065 1.33221 1.29677 1.24406 0.85543 0.78734 0.78787 0.78202 1.19258 1.20899 1.19728 1.21052 0.97387 0.97566 0.88126 1.19754 0.94620 0.97210 0.96039 1.21578 1.00511 0.93650 0.94395 1.21468 0.94340 1.00646 0.96428 1.21275 0.95631 0.93488 0.99108 1.19970 0.94705 1.03197 1.01700 1.18341 0.85905 0.75285 0.74730 1.93151 1.91104 1.77204 1.54063 1.93217 1.69239 1.95505 1.58695 1.93200 1.96293 1.34604 1.92294 1.20751 0.94488 0.99127 0.94157 0.94927 0.90658 0.91840 0.92658 0.89957 0.99681 0.98600 0.92799 0.93153 0.91532 0.83851 0.81373 0.82481 0.86169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.85 9.15 71.98 0.66 -5.19 16 2 C 0.06 2.16 5.51 86.30 0.48 2.64 16 3 N -0.54 -22.43 4.69 -905.38 -4.25 -26.68 16 4 C 0.20 10.59 4.49 85.56 0.38 10.98 16 5 C -0.52 -29.12 8.41 25.60 0.22 -28.90 16 6 H 0.06 3.22 7.30 -2.91 -0.02 3.20 16 7 C 0.01 0.30 5.46 84.65 0.46 0.77 16 8 N -0.93 -55.62 13.29 21.45 0.28 -55.33 16 9 Si 0.96 44.29 29.54 68.60 2.03 46.31 16 10 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 11 H -0.28 -12.75 7.11 99.48 0.71 -12.05 16 12 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 13 C 0.09 2.91 4.93 85.56 0.42 3.33 16 14 C -0.08 -2.10 4.89 -19.86 -0.10 -2.19 16 15 C -0.08 -1.77 7.91 22.27 0.18 -1.59 16 16 C -0.11 -1.85 10.05 22.27 0.22 -1.63 16 17 C -0.08 -1.43 9.43 22.27 0.21 -1.22 16 18 C -0.19 -4.67 5.37 -19.87 -0.11 -4.78 16 19 C 0.51 12.35 3.32 71.23 0.24 12.58 16 20 F -0.17 -3.73 15.97 44.97 0.72 -3.02 16 21 F -0.19 -5.07 17.24 44.97 0.78 -4.29 16 22 F -0.18 -4.61 17.24 44.97 0.78 -3.84 16 23 C -0.07 -1.86 9.26 22.27 0.21 -1.65 16 24 H 0.03 1.31 6.36 -2.39 -0.02 1.29 16 25 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 26 H 0.06 1.80 5.72 -2.39 -0.01 1.78 16 27 H 0.05 2.27 6.94 -2.39 -0.02 2.26 16 28 H 0.08 2.50 5.91 -2.38 -0.01 2.48 16 29 H -0.01 -0.79 6.04 -2.39 -0.01 -0.81 16 30 H 0.00 -0.23 7.93 -2.38 -0.02 -0.25 16 31 H 0.26 14.86 8.31 -92.71 -0.77 14.09 16 32 H 0.05 1.60 6.03 -2.39 -0.01 1.59 16 33 H 0.07 2.36 7.87 -2.39 -0.02 2.34 16 34 H 0.14 2.63 7.29 -2.91 -0.02 2.60 16 35 H 0.17 1.57 8.06 -2.91 -0.02 1.55 16 36 H 0.16 2.15 7.16 -2.91 -0.02 2.13 16 37 H 0.12 3.57 8.06 -2.91 -0.02 3.55 16 Total: -1.00 -63.52 314.55 4.89 -58.63 By element: Atomic # 1 Polarization: 3.98 SS G_CDS: 1.09 Total: 5.07 kcal Atomic # 6 Polarization: -20.33 SS G_CDS: 3.46 Total: -16.86 kcal Atomic # 7 Polarization: -78.05 SS G_CDS: -3.96 Total: -82.01 kcal Atomic # 9 Polarization: -13.41 SS G_CDS: 2.27 Total: -11.15 kcal Atomic # 14 Polarization: 44.29 SS G_CDS: 2.03 Total: 46.31 kcal Total: -63.52 4.89 -58.63 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042454438.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.403 kcal (2) G-P(sol) polarization free energy of solvation -63.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.632 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds