Wall clock time and date at job start Tue Mar 31 2020 06:23:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46894 * 109.47679 * 2 1 4 4 C 1.46908 * 111.00082 * 288.18630 * 3 2 1 5 5 C 1.50703 * 109.47113 * 160.35223 * 4 3 2 6 6 H 1.08003 * 120.00118 * 4.64499 * 5 4 3 7 7 C 1.37871 * 119.99684 * 184.64494 * 5 4 3 8 8 N 1.31514 * 120.00127 * 0.02562 * 7 5 4 9 9 Si 1.86802 * 120.00019 * 179.97438 * 7 5 4 10 10 H 1.48499 * 109.47007 * 89.99851 * 9 7 5 11 11 H 1.48501 * 109.47497 * 210.00383 * 9 7 5 12 12 H 1.48504 * 109.46796 * 330.00002 * 9 7 5 13 13 C 1.46903 * 111.00471 * 164.22906 * 3 2 1 14 14 C 1.50697 * 109.46747 * 293.95704 * 13 3 2 15 15 C 1.38233 * 120.00028 * 89.99875 * 14 13 3 16 16 C 1.38239 * 119.99797 * 179.71853 * 15 14 13 17 17 C 1.38233 * 119.99986 * 0.25897 * 16 15 14 18 18 C 1.50705 * 119.99727 * 179.97438 * 17 16 15 19 19 F 1.39892 * 109.47254 * 90.00401 * 18 17 16 20 20 F 1.39907 * 109.46916 * 210.00162 * 18 17 16 21 21 F 1.39898 * 109.46934 * 329.99851 * 18 17 16 22 22 C 1.38231 * 120.00281 * 0.02562 * 17 16 15 23 23 C 1.38237 * 119.99947 * 270.23349 * 14 13 3 24 24 H 1.08999 * 109.47143 * 59.63113 * 1 2 3 25 25 H 1.08994 * 109.47326 * 179.63371 * 1 2 3 26 26 H 1.09006 * 109.46898 * 299.63351 * 1 2 3 27 27 H 1.09004 * 109.47095 * 240.00104 * 2 1 3 28 28 H 1.09007 * 109.47097 * 120.00359 * 2 1 3 29 29 H 1.08996 * 109.46693 * 280.34891 * 4 3 2 30 30 H 1.09001 * 109.46863 * 40.35400 * 4 3 2 31 31 H 0.97002 * 119.99863 * 179.97438 * 8 7 5 32 32 H 1.09003 * 109.47181 * 173.95683 * 13 3 2 33 33 H 1.08998 * 109.46989 * 53.95514 * 13 3 2 34 34 H 1.07994 * 120.00226 * 0.02562 * 15 14 13 35 35 H 1.08004 * 119.99798 * 180.27921 * 16 15 14 36 36 H 1.08002 * 120.00468 * 179.97438 * 22 17 16 37 37 H 1.08004 * 120.00329 * 0.02562 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.7917 2.0240 -1.3030 5 6 1.8435 3.5217 -1.1438 6 1 2.1013 3.9546 -0.1886 7 6 1.5617 4.3391 -2.2177 8 7 1.2472 3.8119 -3.3808 9 14 1.6251 6.1956 -2.0203 10 1 2.9946 6.6797 -2.3290 11 1 0.6555 6.8259 -2.9520 12 1 1.2755 6.5570 -0.6230 13 6 3.4396 1.4413 0.3727 14 6 3.6003 1.0041 1.8059 15 6 3.8138 -0.3292 2.1020 16 6 3.9671 -0.7293 3.4163 17 6 3.9015 0.2030 4.4348 18 6 4.0680 -0.2334 5.8676 19 9 5.4210 -0.1756 6.2185 20 9 3.3332 0.6158 6.7021 21 9 3.6042 -1.5453 6.0124 22 6 3.6821 1.5354 4.1391 23 6 3.5294 1.9356 2.8248 24 1 -0.3633 0.5195 -0.8866 25 1 -0.3633 -1.0276 -0.0066 26 1 -0.3633 0.5082 0.8933 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 2.5639 1.7062 -2.0035 30 1 0.8129 1.7327 -1.6842 31 1 1.0486 4.3870 -4.1362 32 1 3.8042 2.4624 0.2613 33 1 4.0120 0.7782 -0.2758 34 1 3.8659 -1.0575 1.3063 35 1 4.1384 -1.7704 3.6474 36 1 3.6304 2.2638 4.9349 37 1 3.3584 2.9767 2.5938 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000043512025.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:23:29 Heat of formation + Delta-G solvation = -128.888722 kcal Electronic energy + Delta-G solvation = -22537.744763 eV Core-core repulsion = 18671.765985 eV Total energy + Delta-G solvation = -3865.978778 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 287.119 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -50.23376 -47.75080 -47.70048 -39.59076 -36.87087 -32.90724 -32.34863 -31.09867 -30.04876 -27.73162 -25.94163 -23.92389 -23.09238 -22.44211 -21.22578 -19.77704 -18.57079 -18.45555 -18.41485 -16.51931 -15.78332 -15.30762 -14.93380 -14.75326 -14.57644 -14.44945 -14.32889 -14.16421 -13.95052 -13.86685 -13.79408 -13.54731 -13.37793 -12.85808 -12.55339 -12.18503 -11.85885 -11.57578 -11.34614 -11.25879 -10.95441 -10.83270 -10.80778 -10.61651 -10.30415 -9.74750 -9.33523 -8.98821 -8.90050 -8.46118 -7.35140 -6.06433 -4.07969 0.96938 1.31878 2.60884 3.28815 3.35798 3.39361 3.51571 3.67676 3.97280 4.36594 4.39664 4.79954 4.83981 4.91477 5.07029 5.29881 5.36067 5.40805 5.63151 5.70477 5.73502 5.89556 6.04850 6.06290 6.16984 6.22298 6.30803 6.34846 6.53580 6.69014 6.79099 6.84219 7.16207 7.26719 7.76292 8.05119 8.11596 8.47110 8.98994 9.56409 11.04098 Molecular weight = 287.12amu Principal moments of inertia in cm(-1) A = 0.023494 B = 0.003781 C = 0.003471 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1191.493125 B = 7402.852361 C = 8064.422306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.043 3.957 3 N -0.528 5.528 4 C 0.190 3.810 5 C -0.506 4.506 6 H 0.063 0.937 7 C 0.056 3.944 8 N -0.899 5.899 9 Si 0.896 3.104 10 H -0.281 1.281 11 H -0.287 1.287 12 H -0.273 1.273 13 C 0.090 3.910 14 C -0.026 4.026 15 C -0.121 4.121 16 C -0.074 4.074 17 C -0.197 4.197 18 C 0.510 3.490 19 F -0.180 7.180 20 F -0.179 7.179 21 F -0.180 7.180 22 C -0.072 4.072 23 C -0.099 4.099 24 H 0.061 0.939 25 H 0.045 0.955 26 H 0.056 0.944 27 H 0.022 0.978 28 H 0.062 0.938 29 H -0.010 1.010 30 H 0.040 0.960 31 H 0.261 0.739 32 H 0.095 0.905 33 H 0.034 0.966 34 H 0.130 0.870 35 H 0.130 0.870 36 H 0.132 0.868 37 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.652 -9.134 14.490 18.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.085 4.085 3 N -0.253 5.253 4 C 0.066 3.934 5 C -0.544 4.544 6 H 0.081 0.919 7 C -0.145 4.145 8 N -0.539 5.539 9 Si 0.724 3.276 10 H -0.208 1.208 11 H -0.213 1.213 12 H -0.198 1.198 13 C -0.038 4.038 14 C -0.026 4.026 15 C -0.139 4.139 16 C -0.092 4.092 17 C -0.198 4.198 18 C 0.456 3.544 19 F -0.162 7.162 20 F -0.160 7.160 21 F -0.162 7.162 22 C -0.091 4.091 23 C -0.117 4.117 24 H 0.080 0.920 25 H 0.064 0.936 26 H 0.076 0.924 27 H 0.040 0.960 28 H 0.081 0.919 29 H 0.007 0.993 30 H 0.057 0.943 31 H 0.071 0.929 32 H 0.114 0.886 33 H 0.052 0.948 34 H 0.148 0.852 35 H 0.148 0.852 36 H 0.150 0.850 37 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 5.323 -8.829 14.672 17.932 hybrid contribution 0.432 0.451 -0.379 0.730 sum 5.756 -8.378 14.293 17.539 Atomic orbital electron populations 1.21728 0.95413 0.99971 1.02915 1.22134 0.96222 0.90920 0.99215 1.62209 1.13833 1.14462 1.34786 1.19826 0.96665 0.94270 0.82645 1.21143 1.46324 0.90566 0.96403 0.91922 1.24977 0.95407 0.98948 0.95214 1.69950 1.47450 1.35291 1.01159 0.86526 0.77737 0.85283 0.78045 1.20758 1.21280 1.19764 1.21097 0.91266 1.02269 0.89130 1.20389 0.92417 0.92846 0.96993 1.21096 1.01014 0.96003 0.95792 1.20815 0.97365 0.98859 0.92194 1.19843 1.12747 0.96527 0.90719 1.18373 0.73748 0.74656 0.87667 1.93208 1.33476 1.96088 1.93405 1.93182 1.77423 1.70908 1.74536 1.93172 1.88700 1.37771 1.96516 1.20920 0.96594 0.93783 0.97754 1.21142 0.98646 1.00869 0.91040 0.91997 0.93645 0.92439 0.95991 0.91925 0.99261 0.94252 0.92904 0.88641 0.94778 0.85219 0.85216 0.85049 0.84359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.39 9.98 37.15 0.37 -2.01 16 2 C 0.04 0.75 5.52 -3.83 -0.02 0.73 16 3 N -0.53 -10.61 4.37 -237.51 -1.04 -11.65 16 4 C 0.19 4.70 4.59 -4.97 -0.02 4.68 16 5 C -0.51 -13.56 8.61 -34.44 -0.30 -13.86 16 6 H 0.06 1.65 7.66 -52.48 -0.40 1.25 16 7 C 0.06 1.53 5.46 -17.82 -0.10 1.44 16 8 N -0.90 -25.99 13.29 55.43 0.74 -25.25 16 9 Si 0.90 21.03 29.54 -169.99 -5.02 16.01 16 10 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 11 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 12 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 13 C 0.09 1.57 4.94 -4.98 -0.02 1.55 16 14 C -0.03 -0.38 4.93 -104.63 -0.52 -0.89 16 15 C -0.12 -1.53 7.85 -39.58 -0.31 -1.84 16 16 C -0.07 -0.87 9.40 -39.58 -0.37 -1.25 16 17 C -0.20 -2.42 5.45 -104.62 -0.57 -2.99 16 18 C 0.51 5.98 3.36 36.01 0.12 6.10 16 19 F -0.18 -2.15 17.30 2.25 0.04 -2.11 16 20 F -0.18 -2.15 16.46 2.25 0.04 -2.11 16 21 F -0.18 -2.11 16.46 2.25 0.04 -2.07 16 22 C -0.07 -0.90 9.40 -39.58 -0.37 -1.27 16 23 C -0.10 -1.37 9.70 -39.58 -0.38 -1.75 16 24 H 0.06 1.16 6.52 -51.93 -0.34 0.82 16 25 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 26 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 27 H 0.02 0.38 8.05 -51.93 -0.42 -0.04 16 28 H 0.06 0.96 5.14 -51.93 -0.27 0.69 16 29 H -0.01 -0.27 8.00 -51.93 -0.42 -0.69 16 30 H 0.04 1.05 6.23 -51.93 -0.32 0.72 16 31 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 32 H 0.10 1.79 7.27 -51.93 -0.38 1.41 16 33 H 0.03 0.57 8.06 -51.93 -0.42 0.16 16 34 H 0.13 1.47 7.73 -52.49 -0.41 1.06 16 35 H 0.13 1.27 7.61 -52.48 -0.40 0.87 16 36 H 0.13 1.40 7.60 -52.49 -0.40 1.00 16 37 H 0.14 1.89 8.06 -52.48 -0.42 1.47 16 LS Contribution 320.47 15.07 4.83 4.83 Total: -1.00 -28.32 320.47 -7.44 -35.77 By element: Atomic # 1 Polarization: 2.54 SS G_CDS: -4.57 Total: -2.03 kcal Atomic # 6 Polarization: -8.88 SS G_CDS: -2.50 Total: -11.38 kcal Atomic # 7 Polarization: -36.60 SS G_CDS: -0.30 Total: -36.90 kcal Atomic # 9 Polarization: -6.41 SS G_CDS: 0.11 Total: -6.30 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -28.32 -7.44 -35.77 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000043512025.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.123 kcal (2) G-P(sol) polarization free energy of solvation -28.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.766 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds