Wall clock time and date at job start Tue Mar 31 2020 06:23:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46894 * 109.47679 * 2 1 4 4 C 1.46908 * 111.00082 * 288.18630 * 3 2 1 5 5 C 1.50703 * 109.47113 * 160.35223 * 4 3 2 6 6 H 1.08003 * 120.00118 * 4.64499 * 5 4 3 7 7 C 1.37871 * 119.99684 * 184.64494 * 5 4 3 8 8 N 1.31514 * 120.00127 * 0.02562 * 7 5 4 9 9 Si 1.86802 * 120.00019 * 179.97438 * 7 5 4 10 10 H 1.48499 * 109.47007 * 89.99851 * 9 7 5 11 11 H 1.48501 * 109.47497 * 210.00383 * 9 7 5 12 12 H 1.48504 * 109.46796 * 330.00002 * 9 7 5 13 13 C 1.46903 * 111.00471 * 164.22906 * 3 2 1 14 14 C 1.50697 * 109.46747 * 293.95704 * 13 3 2 15 15 C 1.38233 * 120.00028 * 89.99875 * 14 13 3 16 16 C 1.38239 * 119.99797 * 179.71853 * 15 14 13 17 17 C 1.38233 * 119.99986 * 0.25897 * 16 15 14 18 18 C 1.50705 * 119.99727 * 179.97438 * 17 16 15 19 19 F 1.39892 * 109.47254 * 90.00401 * 18 17 16 20 20 F 1.39907 * 109.46916 * 210.00162 * 18 17 16 21 21 F 1.39898 * 109.46934 * 329.99851 * 18 17 16 22 22 C 1.38231 * 120.00281 * 0.02562 * 17 16 15 23 23 C 1.38237 * 119.99947 * 270.23349 * 14 13 3 24 24 H 1.08999 * 109.47143 * 59.63113 * 1 2 3 25 25 H 1.08994 * 109.47326 * 179.63371 * 1 2 3 26 26 H 1.09006 * 109.46898 * 299.63351 * 1 2 3 27 27 H 1.09004 * 109.47095 * 240.00104 * 2 1 3 28 28 H 1.09007 * 109.47097 * 120.00359 * 2 1 3 29 29 H 1.08996 * 109.46693 * 280.34891 * 4 3 2 30 30 H 1.09001 * 109.46863 * 40.35400 * 4 3 2 31 31 H 0.97002 * 119.99863 * 179.97438 * 8 7 5 32 32 H 1.09003 * 109.47181 * 173.95683 * 13 3 2 33 33 H 1.08998 * 109.46989 * 53.95514 * 13 3 2 34 34 H 1.07994 * 120.00226 * 0.02562 * 15 14 13 35 35 H 1.08004 * 119.99798 * 180.27921 * 16 15 14 36 36 H 1.08002 * 120.00468 * 179.97438 * 22 17 16 37 37 H 1.08004 * 120.00329 * 0.02562 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.7917 2.0240 -1.3030 5 6 1.8435 3.5217 -1.1438 6 1 2.1013 3.9546 -0.1886 7 6 1.5617 4.3391 -2.2177 8 7 1.2472 3.8119 -3.3808 9 14 1.6251 6.1956 -2.0203 10 1 2.9946 6.6797 -2.3290 11 1 0.6555 6.8259 -2.9520 12 1 1.2755 6.5570 -0.6230 13 6 3.4396 1.4413 0.3727 14 6 3.6003 1.0041 1.8059 15 6 3.8138 -0.3292 2.1020 16 6 3.9671 -0.7293 3.4163 17 6 3.9015 0.2030 4.4348 18 6 4.0680 -0.2334 5.8676 19 9 5.4210 -0.1756 6.2185 20 9 3.3332 0.6158 6.7021 21 9 3.6042 -1.5453 6.0124 22 6 3.6821 1.5354 4.1391 23 6 3.5294 1.9356 2.8248 24 1 -0.3633 0.5195 -0.8866 25 1 -0.3633 -1.0276 -0.0066 26 1 -0.3633 0.5082 0.8933 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 2.5639 1.7062 -2.0035 30 1 0.8129 1.7327 -1.6842 31 1 1.0486 4.3870 -4.1362 32 1 3.8042 2.4624 0.2613 33 1 4.0120 0.7782 -0.2758 34 1 3.8659 -1.0575 1.3063 35 1 4.1384 -1.7704 3.6474 36 1 3.6304 2.2638 4.9349 37 1 3.3584 2.9767 2.5938 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000043512025.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:23:28 Heat of formation + Delta-G solvation = -143.646838 kcal Electronic energy + Delta-G solvation = -22538.384723 eV Core-core repulsion = 18671.765985 eV Total energy + Delta-G solvation = -3866.618738 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 287.119 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -51.15712 -48.67170 -48.62458 -40.68370 -38.36240 -34.81572 -33.64266 -32.11857 -31.51001 -29.33851 -27.40456 -25.18890 -24.53977 -23.77372 -22.36149 -21.28435 -19.49331 -19.40918 -19.34439 -18.55687 -17.05196 -16.74400 -16.36918 -15.99903 -15.76228 -15.47181 -15.43345 -15.19872 -15.08412 -15.03279 -14.86990 -14.78566 -14.40838 -14.28882 -14.00583 -13.55878 -13.28384 -13.10308 -12.88066 -12.68507 -12.60853 -12.34872 -12.18045 -12.05713 -11.98881 -11.46678 -11.24676 -10.57312 -10.02315 -9.98176 -8.99966 -8.17025 -6.26269 -0.06767 0.32978 1.42752 1.43906 1.54979 1.67010 2.40864 2.47880 2.73430 3.04440 3.15178 3.39966 3.47969 3.81210 3.85767 3.93075 4.23664 4.28243 4.37287 4.46161 4.62368 4.67187 4.72494 4.82866 4.95747 5.01129 5.05032 5.17930 5.21663 5.25961 5.31165 5.38596 5.62640 5.69565 5.80626 6.10939 6.38207 6.63966 6.88995 7.43100 8.93407 Molecular weight = 287.12amu Principal moments of inertia in cm(-1) A = 0.023494 B = 0.003781 C = 0.003471 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1191.493125 B = 7402.852361 C = 8064.422306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.042 3.958 3 N -0.536 5.536 4 C 0.206 3.794 5 C -0.517 4.517 6 H 0.063 0.937 7 C 0.003 3.997 8 N -0.935 5.935 9 Si 0.964 3.036 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.265 1.265 13 C 0.095 3.905 14 C -0.040 4.040 15 C -0.118 4.118 16 C -0.068 4.068 17 C -0.198 4.198 18 C 0.516 3.484 19 F -0.180 7.180 20 F -0.180 7.180 21 F -0.178 7.178 22 C -0.071 4.071 23 C -0.109 4.109 24 H 0.032 0.968 25 H 0.077 0.923 26 H 0.054 0.946 27 H 0.020 0.980 28 H 0.090 0.910 29 H -0.038 1.038 30 H 0.014 0.986 31 H 0.263 0.737 32 H 0.074 0.926 33 H 0.038 0.962 34 H 0.146 0.854 35 H 0.155 0.845 36 H 0.148 0.852 37 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.094 -9.730 16.374 19.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.085 4.085 3 N -0.260 5.260 4 C 0.080 3.920 5 C -0.556 4.556 6 H 0.081 0.919 7 C -0.195 4.195 8 N -0.576 5.576 9 Si 0.789 3.211 10 H -0.199 1.199 11 H -0.211 1.211 12 H -0.189 1.189 13 C -0.033 4.033 14 C -0.041 4.041 15 C -0.137 4.137 16 C -0.086 4.086 17 C -0.200 4.200 18 C 0.462 3.538 19 F -0.162 7.162 20 F -0.162 7.162 21 F -0.159 7.159 22 C -0.088 4.088 23 C -0.128 4.128 24 H 0.051 0.949 25 H 0.096 0.904 26 H 0.073 0.927 27 H 0.038 0.962 28 H 0.108 0.892 29 H -0.020 1.020 30 H 0.032 0.968 31 H 0.072 0.928 32 H 0.092 0.908 33 H 0.056 0.944 34 H 0.163 0.837 35 H 0.173 0.827 36 H 0.166 0.834 37 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 5.776 -9.438 16.581 19.934 hybrid contribution 0.321 0.558 -0.900 1.107 sum 6.097 -8.879 15.681 19.024 Atomic orbital electron populations 1.21701 0.95044 1.01587 1.01259 1.22245 0.96554 0.89386 1.00355 1.62112 1.15919 1.16283 1.31698 1.19451 0.94316 0.93877 0.84370 1.21471 1.45821 0.91862 0.96397 0.91897 1.25843 0.95008 1.03789 0.94844 1.70077 1.48546 1.37013 1.01983 0.85461 0.77956 0.79453 0.78228 1.19897 1.21087 1.18916 1.20986 0.89564 1.01343 0.91404 1.20144 0.94686 0.94135 0.95145 1.21214 1.00408 0.95234 0.96821 1.21074 0.96037 1.00027 0.91439 1.20010 1.12112 0.96573 0.91264 1.18229 0.73685 0.74667 0.87266 1.93213 1.33507 1.96093 1.93373 1.93184 1.77461 1.70982 1.74543 1.93180 1.88674 1.37596 1.96482 1.21056 0.95904 0.94448 0.97441 1.21151 0.99304 1.00637 0.91683 0.94916 0.90395 0.92721 0.96166 0.89199 1.02007 0.96758 0.92822 0.90752 0.94425 0.83672 0.82718 0.83406 0.84955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.54 9.98 71.98 0.72 -3.82 16 2 C 0.04 1.43 5.52 86.30 0.48 1.91 16 3 N -0.54 -21.81 4.37 -905.35 -3.96 -25.77 16 4 C 0.21 10.56 4.59 85.56 0.39 10.95 16 5 C -0.52 -28.41 8.61 25.60 0.22 -28.19 16 6 H 0.06 3.37 7.66 -2.91 -0.02 3.35 16 7 C 0.00 0.16 5.46 84.65 0.46 0.63 16 8 N -0.94 -55.42 13.29 21.45 0.28 -55.13 16 9 Si 0.96 43.50 29.54 68.60 2.03 45.52 16 10 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 11 H -0.29 -12.71 7.11 99.48 0.71 -12.00 16 12 H -0.26 -11.51 7.11 99.48 0.71 -10.80 16 13 C 0.09 3.33 4.94 85.56 0.42 3.75 16 14 C -0.04 -1.14 4.93 -19.87 -0.10 -1.24 16 15 C -0.12 -2.72 7.85 22.27 0.17 -2.54 16 16 C -0.07 -1.38 9.40 22.27 0.21 -1.17 16 17 C -0.20 -4.32 5.45 -19.87 -0.11 -4.43 16 18 C 0.52 10.68 3.36 71.24 0.24 10.92 16 19 F -0.18 -3.84 17.30 44.97 0.78 -3.06 16 20 F -0.18 -3.88 16.46 44.97 0.74 -3.14 16 21 F -0.18 -3.64 16.46 44.97 0.74 -2.90 16 22 C -0.07 -1.61 9.40 22.27 0.21 -1.40 16 23 C -0.11 -2.93 9.70 22.27 0.22 -2.71 16 24 H 0.03 1.24 6.52 -2.39 -0.02 1.23 16 25 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 26 H 0.05 1.80 8.14 -2.38 -0.02 1.78 16 27 H 0.02 0.69 8.05 -2.39 -0.02 0.67 16 28 H 0.09 2.55 5.14 -2.38 -0.01 2.54 16 29 H -0.04 -2.09 8.00 -2.39 -0.02 -2.11 16 30 H 0.01 0.80 6.23 -2.39 -0.01 0.79 16 31 H 0.26 14.72 8.31 -92.71 -0.77 13.95 16 32 H 0.07 2.88 7.27 -2.39 -0.02 2.87 16 33 H 0.04 1.28 8.06 -2.39 -0.02 1.26 16 34 H 0.15 2.85 7.73 -2.91 -0.02 2.83 16 35 H 0.16 2.38 7.61 -2.91 -0.02 2.36 16 36 H 0.15 2.82 7.60 -2.91 -0.02 2.80 16 37 H 0.13 3.62 8.06 -2.91 -0.02 3.60 16 Total: -1.00 -61.17 320.47 5.23 -55.94 By element: Atomic # 1 Polarization: 4.81 SS G_CDS: 1.08 Total: 5.89 kcal Atomic # 6 Polarization: -20.90 SS G_CDS: 3.54 Total: -17.36 kcal Atomic # 7 Polarization: -77.22 SS G_CDS: -3.67 Total: -80.90 kcal Atomic # 9 Polarization: -11.36 SS G_CDS: 2.26 Total: -9.10 kcal Atomic # 14 Polarization: 43.50 SS G_CDS: 2.03 Total: 45.52 kcal Total: -61.17 5.23 -55.94 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000043512025.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.703 kcal (2) G-P(sol) polarization free energy of solvation -61.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.944 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds