Wall clock time and date at job start Tue Mar 31 2020 06:34:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.38195 * 125.60424 * 2 1 4 4 C 1.46885 * 125.44441 * 359.73535 * 3 2 1 5 5 O 1.21574 * 120.00344 * 179.97438 * 4 3 2 6 6 O 1.34853 * 119.99879 * 0.02562 * 4 3 2 7 7 C 1.45202 * 116.99882 * 179.97438 * 6 4 3 8 8 C 1.52999 * 109.46973 * 180.02562 * 7 6 4 9 9 C 1.53001 * 109.46750 * 179.97438 * 8 7 6 10 10 C 1.50700 * 109.46845 * 179.97438 * 9 8 7 11 11 H 1.08006 * 120.00386 * 359.97438 * 10 9 8 12 12 C 1.37877 * 120.00055 * 180.02562 * 10 9 8 13 13 N 1.31519 * 120.00117 * 179.97438 * 12 10 9 14 14 Si 1.86797 * 120.00110 * 0.02562 * 12 10 9 15 15 H 1.48508 * 109.47080 * 89.99620 * 14 12 10 16 16 H 1.48494 * 109.47556 * 209.99748 * 14 12 10 17 17 H 1.48498 * 109.47037 * 330.00208 * 14 12 10 18 18 C 1.35959 * 109.11438 * 179.97438 * 3 2 1 19 19 C 1.41549 * 107.72063 * 0.02562 * 18 3 2 20 20 C 1.40121 * 133.36796 * 180.02562 * 19 18 3 21 21 C 1.36427 * 119.83298 * 179.97438 * 20 19 18 22 22 C 1.38952 * 120.61583 * 359.95340 * 21 20 19 23 23 C 1.37660 * 120.65165 * 0.02562 * 22 21 20 24 24 C 1.37467 * 125.61284 * 179.97438 * 2 1 3 25 25 H 1.09001 * 109.46576 * 89.97489 * 1 2 3 26 26 H 1.09001 * 109.46790 * 209.97697 * 1 2 3 27 27 H 1.08997 * 109.46862 * 329.97538 * 1 2 3 28 28 H 1.09004 * 109.46804 * 299.99850 * 7 6 4 29 29 H 1.08995 * 109.47089 * 59.99570 * 7 6 4 30 30 H 1.09004 * 109.47086 * 299.99497 * 8 7 6 31 31 H 1.08997 * 109.46902 * 60.00196 * 8 7 6 32 32 H 1.08995 * 109.47626 * 299.99657 * 9 8 7 33 33 H 1.09003 * 109.47373 * 60.00104 * 9 8 7 34 34 H 0.96999 * 119.99925 * 179.97438 * 13 12 10 35 35 H 1.07992 * 126.13969 * 179.97438 * 18 3 2 36 36 H 1.08004 * 120.08230 * 359.97438 * 20 19 18 37 37 H 1.08003 * 119.69354 * 179.97438 * 21 20 19 38 38 H 1.08000 * 119.67278 * 180.02562 * 22 21 20 39 39 H 1.08010 * 120.09545 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2696 1.1236 0.0000 4 6 1.7926 2.5128 -0.0055 5 8 2.5909 3.4297 -0.0045 6 8 0.4690 2.7712 -0.0107 7 6 0.0700 4.1673 -0.0154 8 6 -1.4571 4.2612 -0.0202 9 6 -1.8775 5.7323 -0.0245 10 6 -3.3817 5.8248 -0.0299 11 1 -3.9781 4.9244 -0.0306 12 6 -3.9965 7.0589 -0.0349 13 7 -5.3092 7.1397 -0.0401 14 14 -2.9650 8.6163 -0.0358 15 1 -2.6873 9.0253 -1.4362 16 1 -3.7045 9.7004 0.6591 17 1 -1.6829 8.3612 0.6687 18 6 3.5733 0.7377 0.0006 19 6 3.6037 -0.6775 0.0004 20 6 4.6427 -1.6176 0.0012 21 6 4.3520 -2.9505 0.0012 22 6 3.0328 -3.3871 0.0014 23 6 1.9945 -2.4833 0.0010 24 6 2.2655 -1.1176 0.0005 25 1 -0.3632 0.0005 -1.0277 26 1 -0.3633 -0.8902 0.5135 27 1 -0.3633 0.8897 0.5142 28 1 0.4612 4.6600 0.8748 29 1 0.4673 4.6557 -0.9051 30 1 -1.8486 3.7685 -0.9102 31 1 -1.8539 3.7729 0.8699 32 1 -1.4861 6.2248 0.8656 33 1 -1.4806 6.2211 -0.9143 34 1 -5.7416 8.0079 -0.0433 35 1 4.4315 1.3932 0.0003 36 1 5.6712 -1.2877 0.0018 37 1 5.1546 -3.6731 0.0014 38 1 2.8201 -4.4459 0.0018 39 1 0.9724 -2.8326 0.0016 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000062532066.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:08 Heat of formation + Delta-G solvation = -34.596805 kcal Electronic energy + Delta-G solvation = -21364.487494 eV Core-core repulsion = 18044.454260 eV Total energy + Delta-G solvation = -3320.033234 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 287.131 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.89304 -40.05934 -37.28789 -36.65601 -34.16287 -33.31131 -31.92881 -30.63681 -29.67972 -27.69877 -26.61437 -24.83215 -22.87633 -21.88323 -21.47023 -20.53093 -19.91523 -18.06022 -17.29528 -16.97945 -16.64580 -16.33567 -16.05997 -15.49668 -14.66363 -14.31541 -14.23900 -14.18452 -14.00799 -13.31828 -13.30900 -13.14636 -12.79889 -12.50195 -12.36785 -12.05433 -11.92327 -11.50620 -11.20123 -11.12372 -11.04332 -10.85963 -10.54226 -10.09948 -10.06184 -9.89755 -9.78902 -9.30723 -8.61267 -8.51550 -7.98149 -6.11644 -4.11120 0.42094 1.34239 1.74833 2.34314 2.65765 2.95934 3.26715 3.34675 3.37654 3.61825 4.31101 4.38930 4.53290 4.56327 4.72213 4.84909 5.09567 5.11060 5.16077 5.21541 5.28099 5.36700 5.37647 5.42699 5.53609 5.63087 5.72929 5.77482 6.12048 6.20259 6.29519 6.29584 6.35380 6.41277 6.53098 6.69661 6.77297 6.93085 7.13480 7.25608 7.64282 7.71438 8.44120 8.91883 9.49732 11.01408 Molecular weight = 287.13amu Principal moments of inertia in cm(-1) A = 0.039556 B = 0.002767 C = 0.002594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 707.688647 B =10115.349046 C =10791.972655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.457 5.457 3 C 0.035 3.965 4 C 0.528 3.472 5 O -0.494 6.494 6 O -0.355 6.355 7 C 0.065 3.935 8 C -0.101 4.101 9 C -0.011 4.011 10 C -0.523 4.523 11 H 0.074 0.926 12 C 0.068 3.932 13 N -0.901 5.901 14 Si 0.879 3.121 15 H -0.276 1.276 16 H -0.287 1.287 17 H -0.265 1.265 18 C -0.104 4.104 19 C -0.124 4.124 20 C -0.058 4.058 21 C -0.152 4.152 22 C -0.088 4.088 23 C -0.130 4.130 24 C 0.114 3.886 25 H 0.077 0.923 26 H 0.083 0.917 27 H 0.105 0.895 28 H 0.070 0.930 29 H 0.070 0.930 30 H 0.066 0.934 31 H 0.066 0.934 32 H 0.020 0.980 33 H 0.015 0.985 34 H 0.264 0.736 35 H 0.159 0.841 36 H 0.125 0.875 37 H 0.123 0.877 38 H 0.127 0.873 39 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.033 -20.643 0.203 27.411 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.139 5.139 3 C -0.072 4.072 4 C 0.372 3.628 5 O -0.381 6.381 6 O -0.272 6.272 7 C -0.007 4.007 8 C -0.138 4.138 9 C -0.048 4.048 10 C -0.561 4.561 11 H 0.092 0.908 12 C -0.134 4.134 13 N -0.539 5.539 14 Si 0.707 3.293 15 H -0.202 1.202 16 H -0.212 1.212 17 H -0.190 1.190 18 C -0.131 4.131 19 C -0.128 4.128 20 C -0.076 4.076 21 C -0.171 4.171 22 C -0.108 4.108 23 C -0.150 4.150 24 C 0.004 3.996 25 H 0.095 0.905 26 H 0.101 0.899 27 H 0.123 0.877 28 H 0.088 0.912 29 H 0.088 0.912 30 H 0.085 0.915 31 H 0.085 0.915 32 H 0.038 0.962 33 H 0.033 0.967 34 H 0.074 0.926 35 H 0.176 0.824 36 H 0.143 0.857 37 H 0.141 0.859 38 H 0.145 0.855 39 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 17.668 -20.104 0.204 26.765 hybrid contribution 0.272 1.079 -0.046 1.113 sum 17.939 -19.025 0.158 26.150 Atomic orbital electron populations 1.22275 0.75261 1.05339 1.04153 1.44128 1.06569 1.03388 1.59812 1.19250 0.90491 0.84255 1.13236 1.19918 0.81707 0.87549 0.73655 1.90899 1.56266 1.45176 1.45786 1.86595 1.23863 1.33236 1.83525 1.23595 0.98291 0.76392 1.02471 1.21574 0.88790 1.00720 1.02753 1.19520 0.97894 0.90615 0.96764 1.21029 0.89257 0.94369 1.51410 0.90829 1.25017 0.94840 0.99141 0.94402 1.69905 1.08352 1.24982 1.50694 0.86782 0.80859 0.83060 0.78638 1.20180 1.21246 1.18957 1.20903 0.94675 0.93663 1.03824 1.18153 0.92661 0.93121 1.08890 1.20401 0.97832 0.92067 0.97336 1.20632 0.96578 0.95471 1.04460 1.20889 0.92178 0.99016 0.98673 1.20083 0.99896 0.88914 1.06127 1.18393 0.89851 0.88426 1.02922 0.90452 0.89869 0.87684 0.91200 0.91192 0.91516 0.91521 0.96215 0.96658 0.92597 0.82391 0.85679 0.85856 0.85539 0.85938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.68 10.49 59.85 0.63 1.31 16 2 N -0.46 -5.48 3.22 -117.71 -0.38 -5.86 16 3 C 0.03 0.47 6.81 -82.32 -0.56 -0.09 16 4 C 0.53 8.14 7.93 34.23 0.27 8.41 16 5 O -0.49 -8.64 16.63 -19.32 -0.32 -8.96 16 6 O -0.36 -5.46 7.55 -40.91 -0.31 -5.77 16 7 C 0.07 1.09 5.48 37.16 0.20 1.29 16 8 C -0.10 -1.90 5.53 -26.73 -0.15 -2.05 16 9 C -0.01 -0.24 4.04 -27.88 -0.11 -0.36 16 10 C -0.52 -14.57 9.66 -34.44 -0.33 -14.90 16 11 H 0.07 2.19 7.99 -52.48 -0.42 1.77 16 12 C 0.07 1.94 5.47 -17.82 -0.10 1.85 16 13 N -0.90 -27.41 13.96 55.43 0.77 -26.63 16 14 Si 0.88 21.43 27.47 -169.99 -4.67 16.77 16 15 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 16 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 17 H -0.26 -6.20 6.54 56.52 0.37 -5.83 16 18 C -0.10 -1.28 10.53 -39.14 -0.41 -1.69 16 19 C -0.12 -1.41 6.16 -106.93 -0.66 -2.07 16 20 C -0.06 -0.52 10.06 -39.53 -0.40 -0.92 16 21 C -0.15 -1.18 9.97 -39.97 -0.40 -1.57 16 22 C -0.09 -0.67 10.01 -39.53 -0.40 -1.07 16 23 C -0.13 -1.17 9.98 -39.42 -0.39 -1.57 16 24 C 0.11 1.30 6.81 -83.98 -0.57 0.73 16 25 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 26 H 0.08 0.61 8.12 -51.93 -0.42 0.19 16 27 H 0.10 1.14 6.09 -51.93 -0.32 0.82 16 28 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 29 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 30 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 31 H 0.07 1.24 8.14 -51.93 -0.42 0.81 16 32 H 0.02 0.45 7.20 -51.93 -0.37 0.08 16 33 H 0.02 0.35 7.57 -51.93 -0.39 -0.05 16 34 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 35 H 0.16 1.70 8.06 -52.49 -0.42 1.28 16 36 H 0.13 0.86 8.06 -52.48 -0.42 0.43 16 37 H 0.12 0.65 8.06 -52.48 -0.42 0.23 16 38 H 0.13 0.64 8.06 -52.49 -0.42 0.22 16 39 H 0.12 0.87 8.06 -52.48 -0.42 0.44 16 LS Contribution 334.78 15.07 5.05 5.05 Total: -1.00 -32.16 334.78 -8.56 -40.71 By element: Atomic # 1 Polarization: 2.72 SS G_CDS: -5.32 Total: -2.60 kcal Atomic # 6 Polarization: -9.32 SS G_CDS: -3.38 Total: -12.70 kcal Atomic # 7 Polarization: -32.89 SS G_CDS: 0.39 Total: -32.49 kcal Atomic # 8 Polarization: -14.10 SS G_CDS: -0.63 Total: -14.73 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -4.67 Total: 16.77 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -32.16 -8.56 -40.71 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000062532066.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.114 kcal (2) G-P(sol) polarization free energy of solvation -32.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.710 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds