Wall clock time and date at job start Tue Mar 31 2020 06:34:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.38195 * 125.60424 * 2 1 4 4 C 1.46885 * 125.44441 * 359.73535 * 3 2 1 5 5 O 1.21574 * 120.00344 * 179.97438 * 4 3 2 6 6 O 1.34853 * 119.99879 * 0.02562 * 4 3 2 7 7 C 1.45202 * 116.99882 * 179.97438 * 6 4 3 8 8 C 1.52999 * 109.46973 * 180.02562 * 7 6 4 9 9 C 1.53001 * 109.46750 * 179.97438 * 8 7 6 10 10 C 1.50700 * 109.46845 * 179.97438 * 9 8 7 11 11 H 1.08006 * 120.00386 * 359.97438 * 10 9 8 12 12 C 1.37877 * 120.00055 * 180.02562 * 10 9 8 13 13 N 1.31519 * 120.00117 * 179.97438 * 12 10 9 14 14 Si 1.86797 * 120.00110 * 0.02562 * 12 10 9 15 15 H 1.48508 * 109.47080 * 89.99620 * 14 12 10 16 16 H 1.48494 * 109.47556 * 209.99748 * 14 12 10 17 17 H 1.48498 * 109.47037 * 330.00208 * 14 12 10 18 18 C 1.35959 * 109.11438 * 179.97438 * 3 2 1 19 19 C 1.41549 * 107.72063 * 0.02562 * 18 3 2 20 20 C 1.40121 * 133.36796 * 180.02562 * 19 18 3 21 21 C 1.36427 * 119.83298 * 179.97438 * 20 19 18 22 22 C 1.38952 * 120.61583 * 359.95340 * 21 20 19 23 23 C 1.37660 * 120.65165 * 0.02562 * 22 21 20 24 24 C 1.37467 * 125.61284 * 179.97438 * 2 1 3 25 25 H 1.09001 * 109.46576 * 89.97489 * 1 2 3 26 26 H 1.09001 * 109.46790 * 209.97697 * 1 2 3 27 27 H 1.08997 * 109.46862 * 329.97538 * 1 2 3 28 28 H 1.09004 * 109.46804 * 299.99850 * 7 6 4 29 29 H 1.08995 * 109.47089 * 59.99570 * 7 6 4 30 30 H 1.09004 * 109.47086 * 299.99497 * 8 7 6 31 31 H 1.08997 * 109.46902 * 60.00196 * 8 7 6 32 32 H 1.08995 * 109.47626 * 299.99657 * 9 8 7 33 33 H 1.09003 * 109.47373 * 60.00104 * 9 8 7 34 34 H 0.96999 * 119.99925 * 179.97438 * 13 12 10 35 35 H 1.07992 * 126.13969 * 179.97438 * 18 3 2 36 36 H 1.08004 * 120.08230 * 359.97438 * 20 19 18 37 37 H 1.08003 * 119.69354 * 179.97438 * 21 20 19 38 38 H 1.08000 * 119.67278 * 180.02562 * 22 21 20 39 39 H 1.08010 * 120.09545 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2696 1.1236 0.0000 4 6 1.7926 2.5128 -0.0055 5 8 2.5909 3.4297 -0.0045 6 8 0.4690 2.7712 -0.0107 7 6 0.0700 4.1673 -0.0154 8 6 -1.4571 4.2612 -0.0202 9 6 -1.8775 5.7323 -0.0245 10 6 -3.3817 5.8248 -0.0299 11 1 -3.9781 4.9244 -0.0306 12 6 -3.9965 7.0589 -0.0349 13 7 -5.3092 7.1397 -0.0401 14 14 -2.9650 8.6163 -0.0358 15 1 -2.6873 9.0253 -1.4362 16 1 -3.7045 9.7004 0.6591 17 1 -1.6829 8.3612 0.6687 18 6 3.5733 0.7377 0.0006 19 6 3.6037 -0.6775 0.0004 20 6 4.6427 -1.6176 0.0012 21 6 4.3520 -2.9505 0.0012 22 6 3.0328 -3.3871 0.0014 23 6 1.9945 -2.4833 0.0010 24 6 2.2655 -1.1176 0.0005 25 1 -0.3632 0.0005 -1.0277 26 1 -0.3633 -0.8902 0.5135 27 1 -0.3633 0.8897 0.5142 28 1 0.4612 4.6600 0.8748 29 1 0.4673 4.6557 -0.9051 30 1 -1.8486 3.7685 -0.9102 31 1 -1.8539 3.7729 0.8699 32 1 -1.4861 6.2248 0.8656 33 1 -1.4806 6.2211 -0.9143 34 1 -5.7416 8.0079 -0.0433 35 1 4.4315 1.3932 0.0003 36 1 5.6712 -1.2877 0.0018 37 1 5.1546 -3.6731 0.0014 38 1 2.8201 -4.4459 0.0018 39 1 0.9724 -2.8326 0.0016 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000062532066.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:08 Heat of formation + Delta-G solvation = -51.244594 kcal Electronic energy + Delta-G solvation = -21365.209396 eV Core-core repulsion = 18044.454260 eV Total energy + Delta-G solvation = -3320.755136 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 287.131 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.74430 -41.23016 -38.09010 -37.85334 -35.97322 -34.12510 -33.88981 -31.35740 -30.59193 -29.35823 -27.39255 -26.03376 -24.39060 -22.60968 -22.38120 -22.12645 -21.02405 -19.16733 -18.96372 -18.08766 -17.87351 -17.56515 -16.76452 -16.45276 -16.31575 -15.60570 -15.46797 -15.06060 -14.85387 -14.79389 -14.38886 -14.07931 -14.01334 -13.83984 -13.83361 -13.19909 -12.90519 -12.66540 -12.54268 -12.29495 -12.23785 -12.09687 -11.83010 -11.80063 -11.71152 -11.45348 -11.38562 -10.82893 -10.78959 -9.29880 -8.74265 -8.31741 -6.36626 -0.44635 0.64461 0.86032 1.32297 1.35869 1.37600 1.48896 1.67838 1.92735 2.34229 2.93146 3.03616 3.39141 3.63432 3.82085 3.96306 3.96639 4.07687 4.23763 4.32691 4.36932 4.41659 4.44770 4.52996 4.63967 4.70734 4.76864 4.82370 4.85049 4.93098 5.09652 5.15853 5.41716 5.46345 5.50311 5.55326 5.60332 5.65815 5.68392 6.00647 6.20728 6.23656 6.48595 6.71170 7.27983 8.84636 Molecular weight = 287.13amu Principal moments of inertia in cm(-1) A = 0.039556 B = 0.002767 C = 0.002594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 707.688647 B =10115.349046 C =10791.972655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -0.462 5.462 3 C 0.002 3.998 4 C 0.531 3.469 5 O -0.521 6.521 6 O -0.351 6.351 7 C 0.074 3.926 8 C -0.090 4.090 9 C -0.010 4.010 10 C -0.532 4.532 11 H 0.037 0.963 12 C 0.005 3.995 13 N -0.949 5.949 14 Si 0.948 3.052 15 H -0.266 1.266 16 H -0.284 1.284 17 H -0.246 1.246 18 C -0.100 4.100 19 C -0.148 4.148 20 C -0.066 4.066 21 C -0.150 4.150 22 C -0.078 4.078 23 C -0.144 4.144 24 C 0.102 3.898 25 H 0.081 0.919 26 H 0.107 0.893 27 H 0.090 0.910 28 H 0.073 0.927 29 H 0.073 0.927 30 H 0.065 0.935 31 H 0.065 0.935 32 H 0.025 0.975 33 H 0.024 0.976 34 H 0.267 0.733 35 H 0.165 0.835 36 H 0.144 0.856 37 H 0.153 0.847 38 H 0.158 0.842 39 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.332 -22.315 0.208 30.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.145 5.145 3 C -0.104 4.104 4 C 0.377 3.623 5 O -0.411 6.411 6 O -0.268 6.268 7 C 0.000 4.000 8 C -0.127 4.127 9 C -0.047 4.047 10 C -0.570 4.570 11 H 0.055 0.945 12 C -0.192 4.192 13 N -0.589 5.589 14 Si 0.772 3.228 15 H -0.191 1.191 16 H -0.210 1.210 17 H -0.169 1.169 18 C -0.126 4.126 19 C -0.152 4.152 20 C -0.084 4.084 21 C -0.169 4.169 22 C -0.098 4.098 23 C -0.164 4.164 24 C -0.008 4.008 25 H 0.099 0.901 26 H 0.125 0.875 27 H 0.109 0.891 28 H 0.091 0.909 29 H 0.092 0.908 30 H 0.084 0.916 31 H 0.084 0.916 32 H 0.044 0.956 33 H 0.042 0.958 34 H 0.076 0.924 35 H 0.182 0.818 36 H 0.161 0.839 37 H 0.171 0.829 38 H 0.176 0.824 39 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 19.972 -21.804 0.209 29.569 hybrid contribution -0.425 1.345 -0.048 1.411 sum 19.547 -20.459 0.160 28.297 Atomic orbital electron populations 1.22364 0.74501 1.05799 1.04552 1.44220 1.07080 1.03166 1.59987 1.19114 0.91296 0.83745 1.16272 1.20208 0.81105 0.88250 0.72728 1.90872 1.56619 1.46129 1.47478 1.86596 1.24326 1.32232 1.83649 1.23306 0.96480 0.77307 1.02862 1.21314 0.90573 0.98114 1.02731 1.19453 0.94583 0.93481 0.97229 1.21384 0.91780 0.93203 1.50671 0.94473 1.25991 0.96027 1.03084 0.94086 1.70056 1.10437 1.26056 1.52393 0.85685 0.79648 0.78236 0.79278 1.19143 1.20958 1.16939 1.21134 0.94457 0.94595 1.02446 1.18421 0.93673 0.92947 1.10195 1.20717 0.98256 0.92390 0.97059 1.21057 0.97613 0.95456 1.02766 1.21362 0.91798 1.00414 0.96180 1.20415 1.01468 0.88028 1.06522 1.18802 0.89867 0.89167 1.02998 0.90062 0.87459 0.89139 0.90862 0.90822 0.91627 0.91609 0.95624 0.95765 0.92406 0.81765 0.83869 0.82934 0.82428 0.84182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.29 10.49 127.77 1.34 2.63 16 2 N -0.46 -10.92 3.22 -526.34 -1.70 -12.61 16 3 C 0.00 0.07 6.81 39.88 0.27 0.34 16 4 C 0.53 16.55 7.93 70.09 0.56 17.10 16 5 O -0.52 -18.40 16.63 19.59 0.33 -18.07 16 6 O -0.35 -10.82 7.55 -57.66 -0.44 -11.26 16 7 C 0.07 2.41 5.48 71.98 0.39 2.80 16 8 C -0.09 -3.37 5.53 30.59 0.17 -3.20 16 9 C -0.01 -0.45 4.04 29.85 0.12 -0.33 16 10 C -0.53 -30.20 9.66 25.60 0.25 -29.95 16 11 H 0.04 2.30 7.99 -2.91 -0.02 2.28 16 12 C 0.01 0.30 5.47 84.65 0.46 0.76 16 13 N -0.95 -59.10 13.96 21.45 0.30 -58.80 16 14 Si 0.95 43.83 27.47 68.60 1.88 45.71 16 15 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 16 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 17 H -0.25 -10.53 6.54 99.48 0.65 -9.88 16 18 C -0.10 -2.43 10.53 22.56 0.24 -2.19 16 19 C -0.15 -3.22 6.16 -21.36 -0.13 -3.35 16 20 C -0.07 -1.03 10.06 22.30 0.22 -0.81 16 21 C -0.15 -1.79 9.97 22.02 0.22 -1.57 16 22 C -0.08 -0.91 10.01 22.30 0.22 -0.69 16 23 C -0.14 -2.25 9.98 22.37 0.22 -2.02 16 24 C 0.10 2.19 6.81 39.14 0.27 2.45 16 25 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 26 H 0.11 1.45 8.12 -2.39 -0.02 1.43 16 27 H 0.09 1.98 6.09 -2.39 -0.01 1.96 16 28 H 0.07 2.36 8.14 -2.38 -0.02 2.34 16 29 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 30 H 0.06 2.45 8.14 -2.38 -0.02 2.43 16 31 H 0.07 2.46 8.14 -2.39 -0.02 2.44 16 32 H 0.03 1.14 7.20 -2.39 -0.02 1.12 16 33 H 0.02 1.06 7.57 -2.39 -0.02 1.04 16 34 H 0.27 15.50 8.31 -92.71 -0.77 14.73 16 35 H 0.16 3.56 8.06 -2.91 -0.02 3.53 16 36 H 0.14 1.61 8.06 -2.91 -0.02 1.59 16 37 H 0.15 0.92 8.06 -2.91 -0.02 0.89 16 38 H 0.16 0.85 8.06 -2.91 -0.02 0.83 16 39 H 0.14 1.60 8.06 -2.91 -0.02 1.57 16 Total: -1.00 -70.50 334.78 6.19 -64.32 By element: Atomic # 1 Polarization: 7.74 SS G_CDS: 0.99 Total: 8.73 kcal Atomic # 6 Polarization: -22.84 SS G_CDS: 4.82 Total: -18.02 kcal Atomic # 7 Polarization: -70.01 SS G_CDS: -1.40 Total: -71.41 kcal Atomic # 8 Polarization: -29.22 SS G_CDS: -0.11 Total: -29.33 kcal Atomic # 14 Polarization: 43.83 SS G_CDS: 1.88 Total: 45.71 kcal Total: -70.50 6.19 -64.32 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000062532066.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.070 kcal (2) G-P(sol) polarization free energy of solvation -70.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.315 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds