Wall clock time and date at job start Tue Mar 31 2020 06:13:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.47543 * 2 1 4 4 C 1.50706 * 109.46973 * 240.00621 * 2 1 3 5 5 H 1.08000 * 119.99489 * 275.11731 * 4 2 1 6 6 C 1.37878 * 120.00161 * 95.12649 * 4 2 1 7 7 N 1.31518 * 119.99580 * 182.61938 * 6 4 2 8 8 Si 1.86800 * 119.99959 * 2.61031 * 6 4 2 9 9 H 1.48505 * 109.46895 * 85.11530 * 8 6 4 10 10 H 1.48498 * 109.46928 * 205.11627 * 8 6 4 11 11 H 1.48499 * 109.47254 * 325.11817 * 8 6 4 12 12 N 1.46897 * 109.47261 * 120.00414 * 2 1 3 13 13 C 1.46896 * 111.00492 * 176.04274 * 12 2 1 14 14 C 1.46898 * 110.99863 * 300.00026 * 12 2 1 15 15 C 1.50699 * 109.47222 * 173.29714 * 14 12 2 16 16 C 1.38258 * 120.00122 * 101.54672 * 15 14 12 17 17 C 1.38209 * 120.00222 * 179.74594 * 16 15 14 18 18 C 1.38253 * 120.00177 * 0.55473 * 17 16 15 19 19 C 1.38218 * 119.99559 * 359.69773 * 18 17 16 20 20 C 1.38217 * 120.00135 * 281.82795 * 15 14 12 21 21 C 1.50701 * 119.99955 * 359.97438 * 20 15 14 22 22 F 1.39894 * 109.46845 * 178.58094 * 21 20 15 23 23 F 1.39896 * 109.47175 * 298.58352 * 21 20 15 24 24 F 1.39901 * 109.46809 * 58.58251 * 21 20 15 25 25 H 1.08993 * 109.47067 * 186.68665 * 1 2 3 26 26 H 1.08999 * 109.46976 * 306.69372 * 1 2 3 27 27 H 1.09004 * 109.46735 * 66.68692 * 1 2 3 28 28 H 0.96998 * 119.99378 * 180.02562 * 7 6 4 29 29 H 1.08998 * 109.46710 * 64.32178 * 13 12 2 30 30 H 1.08991 * 109.47685 * 184.32424 * 13 12 2 31 31 H 1.09004 * 109.47169 * 304.33058 * 13 12 2 32 32 H 1.08994 * 109.47499 * 293.29805 * 14 12 2 33 33 H 1.09006 * 109.47196 * 53.30098 * 14 12 2 34 34 H 1.08007 * 119.99599 * 359.97438 * 16 15 14 35 35 H 1.08003 * 120.00294 * 180.27517 * 17 16 15 36 36 H 1.07997 * 120.00763 * 179.72392 * 18 17 16 37 37 H 1.08007 * 119.99951 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7103 -1.2306 5 1 2.1336 -1.7855 -1.2298 6 6 2.3627 0.0125 -2.3573 7 7 2.7519 -0.6111 -3.4479 8 14 2.2573 1.8774 -2.3347 9 1 3.5168 2.4377 -1.7824 10 1 2.0573 2.3786 -3.7182 11 1 1.1141 2.2984 -1.4856 12 7 2.0197 -0.6926 1.1994 13 6 3.4851 -0.7947 1.1870 14 6 1.5487 -0.0265 2.4210 15 6 1.9297 -0.8527 3.6224 16 6 3.0186 -0.4902 4.3934 17 6 3.3649 -1.2449 5.4983 18 6 2.6295 -2.3688 5.8259 19 6 1.5440 -2.7341 5.0521 20 6 1.1942 -1.9760 3.9501 21 6 0.0107 -2.3744 3.1064 22 9 -0.5483 -3.5521 3.6138 23 9 -0.9462 -1.3543 3.1340 24 9 0.4283 -2.5866 1.7881 25 1 -0.3633 -1.0206 0.1197 26 1 -0.3633 0.6141 0.8240 27 1 -0.3633 0.4067 -0.9438 28 1 2.9847 -0.1025 -4.2403 29 1 3.9192 0.2038 1.2366 30 1 3.8160 -1.3779 2.0462 31 1 3.8073 -1.2857 0.2687 32 1 2.0076 0.9591 2.4975 33 1 0.4645 0.0795 2.3821 34 1 3.5964 0.3848 4.1344 35 1 4.2129 -0.9593 6.1032 36 1 2.9027 -2.9611 6.6867 37 1 0.9697 -3.6123 5.3077 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000064931745.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:27 Heat of formation + Delta-G solvation = -111.086795 kcal Electronic energy + Delta-G solvation = -24236.186247 eV Core-core repulsion = 20370.979418 eV Total energy + Delta-G solvation = -3865.206829 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 287.119 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -49.71846 -47.34769 -46.94346 -39.62062 -36.96607 -33.02946 -31.94932 -31.46361 -29.70027 -27.17717 -25.67289 -24.69312 -23.43267 -22.17699 -21.08198 -19.28625 -18.08824 -17.96889 -17.87454 -17.00015 -15.94649 -15.27691 -15.05563 -14.73361 -14.37585 -14.11734 -13.88150 -13.82910 -13.64852 -13.37821 -13.18379 -13.02577 -12.80005 -12.58279 -12.51400 -12.41039 -12.21574 -11.51635 -11.23087 -11.16989 -11.01331 -10.79395 -10.60524 -10.29963 -10.16280 -9.78272 -9.19396 -9.11585 -8.79732 -8.58275 -7.32456 -6.08090 -4.06083 0.98936 1.23940 3.05377 3.24445 3.34178 3.35903 3.49841 4.08637 4.38761 4.39296 4.70637 4.77667 4.84835 4.92208 5.06703 5.20758 5.30549 5.40846 5.59381 5.67645 5.84696 6.01994 6.12755 6.18837 6.28088 6.31063 6.39268 6.50194 6.61453 6.68514 6.75666 6.87227 7.04181 7.32864 7.62739 7.97191 8.08368 8.65689 9.03920 9.55329 11.04882 Molecular weight = 287.12amu Principal moments of inertia in cm(-1) A = 0.022081 B = 0.006039 C = 0.005372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1267.726546 B = 4635.252897 C = 5210.887768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.182 3.818 3 H 0.000 1.000 4 C -0.496 4.496 5 H 0.082 0.918 6 C 0.072 3.928 7 N -0.897 5.897 8 Si 0.871 3.129 9 H -0.279 1.279 10 H -0.288 1.288 11 H -0.266 1.266 12 N -0.516 5.516 13 C 0.037 3.963 14 C 0.060 3.940 15 C -0.013 4.013 16 C -0.120 4.120 17 C -0.092 4.092 18 C -0.132 4.132 19 C -0.078 4.078 20 C -0.163 4.163 21 C 0.503 3.497 22 F -0.191 7.191 23 F -0.183 7.183 24 F -0.137 7.137 25 H 0.057 0.943 26 H 0.019 0.981 27 H 0.049 0.951 28 H 0.264 0.736 29 H 0.008 0.992 30 H 0.044 0.956 31 H 0.088 0.912 32 H 0.038 0.962 33 H 0.092 0.908 34 H 0.129 0.871 35 H 0.127 0.873 36 H 0.129 0.871 37 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.256 -1.033 18.698 18.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.075 3.925 3 H 0.018 0.982 4 C -0.535 4.535 5 H 0.100 0.900 6 C -0.130 4.130 7 N -0.535 5.535 8 Si 0.698 3.302 9 H -0.205 1.205 10 H -0.214 1.214 11 H -0.191 1.191 12 N -0.240 5.240 13 C -0.111 4.111 14 C -0.067 4.067 15 C -0.014 4.014 16 C -0.138 4.138 17 C -0.110 4.110 18 C -0.150 4.150 19 C -0.096 4.096 20 C -0.165 4.165 21 C 0.449 3.551 22 F -0.172 7.172 23 F -0.164 7.164 24 F -0.118 7.118 25 H 0.076 0.924 26 H 0.038 0.962 27 H 0.068 0.932 28 H 0.074 0.926 29 H 0.027 0.973 30 H 0.063 0.937 31 H 0.107 0.893 32 H 0.057 0.943 33 H 0.110 0.890 34 H 0.147 0.853 35 H 0.145 0.855 36 H 0.147 0.853 37 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -1.431 -1.482 18.429 18.544 hybrid contribution 0.191 1.814 -0.220 1.837 sum -1.239 0.332 18.210 18.255 Atomic orbital electron populations 1.22026 0.97866 1.00703 0.98778 1.19737 0.92250 0.91965 0.88516 0.98247 1.20863 1.42723 0.95952 0.93951 0.89953 1.24983 0.94727 0.97800 0.95512 1.69888 1.45588 1.35604 1.02429 0.86966 0.78952 0.87045 0.77211 1.20468 1.21426 1.19075 1.62320 1.10174 1.51307 1.00201 1.22225 0.87790 0.98626 1.02455 1.21479 1.02127 0.94169 0.88971 1.19773 0.93143 0.93281 0.95163 1.21102 0.96591 1.00812 0.95309 1.21292 0.98856 0.94515 0.96313 1.21058 0.95828 0.97746 1.00358 1.20991 0.96874 0.98648 0.93075 1.19884 0.98429 0.99579 0.98620 1.18288 0.82353 0.74094 0.80401 1.93109 1.86995 1.49659 1.87454 1.93144 1.66729 1.59967 1.96598 1.93443 1.89410 1.94269 1.34662 0.92407 0.96184 0.93181 0.92643 0.97345 0.93699 0.89348 0.94342 0.89033 0.85303 0.85498 0.85338 0.84818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.98 8.75 37.16 0.33 -2.65 16 2 C 0.18 4.27 1.69 -68.86 -0.12 4.15 16 3 H 0.00 0.00 5.38 -51.93 -0.28 -0.28 16 4 C -0.50 -13.66 7.39 -34.44 -0.25 -13.92 16 5 H 0.08 2.52 8.05 -52.49 -0.42 2.10 16 6 C 0.07 2.03 5.47 -17.82 -0.10 1.93 16 7 N -0.90 -27.01 13.96 55.43 0.77 -26.24 16 8 Si 0.87 21.36 26.94 -169.99 -4.58 16.78 16 9 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 10 H -0.29 -7.06 7.11 56.52 0.40 -6.65 16 11 H -0.27 -6.30 6.89 56.52 0.39 -5.91 16 12 N -0.52 -10.64 2.72 -237.74 -0.65 -11.29 16 13 C 0.04 0.74 8.97 60.06 0.54 1.28 16 14 C 0.06 1.05 4.09 -4.98 -0.02 1.03 16 15 C -0.01 -0.19 4.36 -104.62 -0.46 -0.65 16 16 C -0.12 -1.48 8.83 -39.58 -0.35 -1.83 16 17 C -0.09 -0.94 10.05 -39.59 -0.40 -1.34 16 18 C -0.13 -1.33 10.05 -39.58 -0.40 -1.73 16 19 C -0.08 -0.94 9.43 -39.58 -0.37 -1.31 16 20 C -0.16 -2.41 5.37 -104.62 -0.56 -2.97 16 21 C 0.50 8.16 2.86 36.01 0.10 8.27 16 22 F -0.19 -2.86 15.97 2.25 0.04 -2.82 16 23 F -0.18 -3.00 15.49 2.25 0.03 -2.96 16 24 F -0.14 -2.66 13.83 2.25 0.03 -2.63 16 25 H 0.06 1.28 7.10 -51.93 -0.37 0.91 16 26 H 0.02 0.38 6.63 -51.93 -0.34 0.04 16 27 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 28 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 29 H 0.01 0.15 8.14 -51.93 -0.42 -0.27 16 30 H 0.04 0.78 6.66 -51.93 -0.35 0.44 16 31 H 0.09 1.98 6.81 -51.93 -0.35 1.63 16 32 H 0.04 0.64 7.99 -51.93 -0.41 0.22 16 33 H 0.09 1.62 4.09 -51.93 -0.21 1.41 16 34 H 0.13 1.44 8.03 -52.48 -0.42 1.02 16 35 H 0.13 0.94 8.06 -52.48 -0.42 0.52 16 36 H 0.13 0.93 8.06 -52.49 -0.42 0.50 16 37 H 0.13 1.39 7.16 -52.48 -0.38 1.01 16 LS Contribution 305.90 15.07 4.61 4.61 Total: -1.00 -29.92 305.90 -6.17 -36.10 By element: Atomic # 1 Polarization: 2.57 SS G_CDS: -4.38 Total: -1.80 kcal Atomic # 6 Polarization: -7.69 SS G_CDS: -2.06 Total: -9.74 kcal Atomic # 7 Polarization: -37.65 SS G_CDS: 0.13 Total: -37.53 kcal Atomic # 9 Polarization: -8.51 SS G_CDS: 0.10 Total: -8.41 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -4.58 Total: 16.78 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -29.92 -6.17 -36.10 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000064931745.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.990 kcal (2) G-P(sol) polarization free energy of solvation -29.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.097 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds