Wall clock time and date at job start Tue Mar 31 2020 06:13:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.47543 * 2 1 4 4 C 1.50706 * 109.46973 * 240.00621 * 2 1 3 5 5 H 1.08000 * 119.99489 * 275.11731 * 4 2 1 6 6 C 1.37878 * 120.00161 * 95.12649 * 4 2 1 7 7 N 1.31518 * 119.99580 * 182.61938 * 6 4 2 8 8 Si 1.86800 * 119.99959 * 2.61031 * 6 4 2 9 9 H 1.48505 * 109.46895 * 85.11530 * 8 6 4 10 10 H 1.48498 * 109.46928 * 205.11627 * 8 6 4 11 11 H 1.48499 * 109.47254 * 325.11817 * 8 6 4 12 12 N 1.46897 * 109.47261 * 120.00414 * 2 1 3 13 13 C 1.46896 * 111.00492 * 176.04274 * 12 2 1 14 14 C 1.46898 * 110.99863 * 300.00026 * 12 2 1 15 15 C 1.50699 * 109.47222 * 173.29714 * 14 12 2 16 16 C 1.38258 * 120.00122 * 101.54672 * 15 14 12 17 17 C 1.38209 * 120.00222 * 179.74594 * 16 15 14 18 18 C 1.38253 * 120.00177 * 0.55473 * 17 16 15 19 19 C 1.38218 * 119.99559 * 359.69773 * 18 17 16 20 20 C 1.38217 * 120.00135 * 281.82795 * 15 14 12 21 21 C 1.50701 * 119.99955 * 359.97438 * 20 15 14 22 22 F 1.39894 * 109.46845 * 178.58094 * 21 20 15 23 23 F 1.39896 * 109.47175 * 298.58352 * 21 20 15 24 24 F 1.39901 * 109.46809 * 58.58251 * 21 20 15 25 25 H 1.08993 * 109.47067 * 186.68665 * 1 2 3 26 26 H 1.08999 * 109.46976 * 306.69372 * 1 2 3 27 27 H 1.09004 * 109.46735 * 66.68692 * 1 2 3 28 28 H 0.96998 * 119.99378 * 180.02562 * 7 6 4 29 29 H 1.08998 * 109.46710 * 64.32178 * 13 12 2 30 30 H 1.08991 * 109.47685 * 184.32424 * 13 12 2 31 31 H 1.09004 * 109.47169 * 304.33058 * 13 12 2 32 32 H 1.08994 * 109.47499 * 293.29805 * 14 12 2 33 33 H 1.09006 * 109.47196 * 53.30098 * 14 12 2 34 34 H 1.08007 * 119.99599 * 359.97438 * 16 15 14 35 35 H 1.08003 * 120.00294 * 180.27517 * 17 16 15 36 36 H 1.07997 * 120.00763 * 179.72392 * 18 17 16 37 37 H 1.08007 * 119.99951 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7103 -1.2306 5 1 2.1336 -1.7855 -1.2298 6 6 2.3627 0.0125 -2.3573 7 7 2.7519 -0.6111 -3.4479 8 14 2.2573 1.8774 -2.3347 9 1 3.5168 2.4377 -1.7824 10 1 2.0573 2.3786 -3.7182 11 1 1.1141 2.2984 -1.4856 12 7 2.0197 -0.6926 1.1994 13 6 3.4851 -0.7947 1.1870 14 6 1.5487 -0.0265 2.4210 15 6 1.9297 -0.8527 3.6224 16 6 3.0186 -0.4902 4.3934 17 6 3.3649 -1.2449 5.4983 18 6 2.6295 -2.3688 5.8259 19 6 1.5440 -2.7341 5.0521 20 6 1.1942 -1.9760 3.9501 21 6 0.0107 -2.3744 3.1064 22 9 -0.5483 -3.5521 3.6138 23 9 -0.9462 -1.3543 3.1340 24 9 0.4283 -2.5866 1.7881 25 1 -0.3633 -1.0206 0.1197 26 1 -0.3633 0.6141 0.8240 27 1 -0.3633 0.4067 -0.9438 28 1 2.9847 -0.1025 -4.2403 29 1 3.9192 0.2038 1.2366 30 1 3.8160 -1.3779 2.0462 31 1 3.8073 -1.2857 0.2687 32 1 2.0076 0.9591 2.4975 33 1 0.4645 0.0795 2.3821 34 1 3.5964 0.3848 4.1344 35 1 4.2129 -0.9593 6.1032 36 1 2.9027 -2.9611 6.6867 37 1 0.9697 -3.6123 5.3077 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000064931745.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:27 Heat of formation + Delta-G solvation = -128.038952 kcal Electronic energy + Delta-G solvation = -24236.921347 eV Core-core repulsion = 20370.979418 eV Total energy + Delta-G solvation = -3865.941930 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 287.119 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -50.99565 -48.59104 -48.31269 -40.64872 -38.52217 -34.85401 -33.20919 -32.70621 -31.32262 -28.64313 -26.97750 -26.45452 -24.90868 -23.20270 -22.29778 -21.02242 -19.34538 -19.20648 -19.17998 -18.91678 -17.17397 -16.58760 -16.32161 -16.14805 -15.71141 -15.58168 -15.22372 -15.18205 -14.94610 -14.78231 -14.57080 -14.49027 -14.41483 -14.19757 -13.75064 -13.63972 -13.41289 -13.12423 -12.91451 -12.65537 -12.62372 -12.23307 -12.08024 -12.03235 -11.81882 -11.68491 -11.10428 -10.74412 -10.09925 -9.81459 -8.93514 -8.27144 -6.29474 0.04717 0.32454 1.30273 1.33521 1.43554 1.86365 2.32861 2.57093 2.91516 3.03654 3.22388 3.37203 3.65149 3.74259 3.89777 4.13792 4.27254 4.42154 4.45128 4.53111 4.55905 4.61927 4.76628 4.80685 4.83976 4.92908 5.00031 5.08784 5.28963 5.31981 5.43298 5.45619 5.50587 5.67778 5.90210 6.09630 6.38239 6.67977 6.79297 7.35797 8.89839 Molecular weight = 287.12amu Principal moments of inertia in cm(-1) A = 0.022081 B = 0.006039 C = 0.005372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1267.726546 B = 4635.252897 C = 5210.887768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.185 3.815 3 H 0.000 1.000 4 C -0.492 4.492 5 H 0.033 0.967 6 C 0.016 3.984 7 N -0.946 5.946 8 Si 0.935 3.065 9 H -0.268 1.268 10 H -0.287 1.287 11 H -0.249 1.249 12 N -0.527 5.527 13 C 0.047 3.953 14 C 0.064 3.936 15 C -0.037 4.037 16 C -0.123 4.123 17 C -0.082 4.082 18 C -0.119 4.119 19 C -0.084 4.084 20 C -0.181 4.181 21 C 0.498 3.502 22 F -0.186 7.186 23 F -0.187 7.187 24 F -0.163 7.163 25 H 0.047 0.953 26 H 0.047 0.953 27 H 0.041 0.959 28 H 0.265 0.735 29 H 0.017 0.983 30 H 0.068 0.932 31 H 0.050 0.950 32 H 0.049 0.951 33 H 0.084 0.916 34 H 0.141 0.859 35 H 0.164 0.836 36 H 0.166 0.834 37 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.570 0.267 22.038 22.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.078 3.922 3 H 0.017 0.983 4 C -0.530 4.530 5 H 0.052 0.948 6 C -0.182 4.182 7 N -0.587 5.587 8 Si 0.759 3.241 9 H -0.194 1.194 10 H -0.213 1.213 11 H -0.172 1.172 12 N -0.251 5.251 13 C -0.101 4.101 14 C -0.063 4.063 15 C -0.038 4.038 16 C -0.142 4.142 17 C -0.100 4.100 18 C -0.137 4.137 19 C -0.102 4.102 20 C -0.183 4.183 21 C 0.444 3.556 22 F -0.167 7.167 23 F -0.169 7.169 24 F -0.144 7.144 25 H 0.066 0.934 26 H 0.066 0.934 27 H 0.060 0.940 28 H 0.074 0.926 29 H 0.035 0.965 30 H 0.087 0.913 31 H 0.068 0.932 32 H 0.067 0.933 33 H 0.102 0.898 34 H 0.159 0.841 35 H 0.181 0.819 36 H 0.183 0.817 37 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -0.755 -0.186 21.803 21.817 hybrid contribution -0.016 1.261 -1.127 1.691 sum -0.771 1.075 20.677 20.719 Atomic orbital electron populations 1.21906 0.96750 1.00655 0.99415 1.19570 0.93020 0.91397 0.88225 0.98259 1.20960 1.42144 0.93924 0.96017 0.94833 1.25787 0.94542 1.02927 0.94933 1.70043 1.47608 1.37687 1.03359 0.85931 0.79854 0.80793 0.77533 1.19366 1.21271 1.17226 1.62123 1.10536 1.51815 1.00658 1.22085 0.87520 0.99010 1.01488 1.21422 1.01627 0.94926 0.88322 1.19622 0.95057 0.93860 0.95270 1.21315 0.95660 1.01534 0.95650 1.21725 0.99301 0.93573 0.95353 1.21525 0.94171 0.97540 1.00447 1.21259 0.97780 0.98729 0.92443 1.19895 0.98205 1.00569 0.99652 1.18606 0.83135 0.74166 0.79704 1.93105 1.87029 1.49418 1.87188 1.93124 1.67051 1.60131 1.96554 1.93387 1.89729 1.94467 1.36838 0.93412 0.93410 0.94017 0.92590 0.96482 0.91335 0.93156 0.93305 0.89833 0.84098 0.81860 0.81685 0.83578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.66 8.75 71.98 0.63 -5.03 16 2 C 0.19 8.74 1.69 44.17 0.07 8.82 16 3 H 0.00 -0.01 5.38 -2.39 -0.01 -0.02 16 4 C -0.49 -28.13 7.39 25.60 0.19 -27.95 16 5 H 0.03 2.19 8.05 -2.91 -0.02 2.17 16 6 C 0.02 0.90 5.47 84.65 0.46 1.36 16 7 N -0.95 -59.18 13.96 21.45 0.30 -58.88 16 8 Si 0.93 44.15 26.94 68.60 1.85 45.99 16 9 H -0.27 -12.17 7.11 99.48 0.71 -11.47 16 10 H -0.29 -13.40 7.11 99.48 0.71 -12.69 16 11 H -0.25 -10.96 6.89 99.48 0.69 -10.27 16 12 N -0.53 -21.76 2.72 -906.07 -2.47 -24.23 16 13 C 0.05 1.86 8.97 127.69 1.15 3.01 16 14 C 0.06 2.15 4.09 85.56 0.35 2.50 16 15 C -0.04 -1.05 4.36 -19.86 -0.09 -1.14 16 16 C -0.12 -2.63 8.83 22.27 0.20 -2.43 16 17 C -0.08 -1.27 10.05 22.27 0.22 -1.05 16 18 C -0.12 -1.84 10.05 22.27 0.22 -1.62 16 19 C -0.08 -1.79 9.43 22.27 0.21 -1.57 16 20 C -0.18 -5.09 5.37 -19.87 -0.11 -5.19 16 21 C 0.50 16.10 2.86 71.24 0.20 16.30 16 22 F -0.19 -5.50 15.97 44.97 0.72 -4.78 16 23 F -0.19 -6.11 15.49 44.97 0.70 -5.41 16 24 F -0.16 -6.52 13.83 44.97 0.62 -5.90 16 25 H 0.05 2.15 7.10 -2.39 -0.02 2.13 16 26 H 0.05 1.80 6.63 -2.39 -0.02 1.78 16 27 H 0.04 1.85 8.14 -2.38 -0.02 1.83 16 28 H 0.27 15.54 8.31 -92.71 -0.77 14.77 16 29 H 0.02 0.62 8.14 -2.39 -0.02 0.60 16 30 H 0.07 2.33 6.66 -2.39 -0.02 2.32 16 31 H 0.05 2.34 6.81 -2.38 -0.02 2.33 16 32 H 0.05 1.51 7.99 -2.39 -0.02 1.50 16 33 H 0.08 2.88 4.09 -2.38 -0.01 2.87 16 34 H 0.14 2.61 8.03 -2.91 -0.02 2.59 16 35 H 0.16 1.39 8.06 -2.91 -0.02 1.37 16 36 H 0.17 1.38 8.06 -2.91 -0.02 1.36 16 37 H 0.15 2.64 7.16 -2.91 -0.02 2.62 16 Total: -1.00 -67.90 305.90 6.50 -61.40 By element: Atomic # 1 Polarization: 4.74 SS G_CDS: 1.07 Total: 5.81 kcal Atomic # 6 Polarization: -17.71 SS G_CDS: 3.72 Total: -14.00 kcal Atomic # 7 Polarization: -80.94 SS G_CDS: -2.17 Total: -83.11 kcal Atomic # 9 Polarization: -18.13 SS G_CDS: 2.04 Total: -16.10 kcal Atomic # 14 Polarization: 44.15 SS G_CDS: 1.85 Total: 45.99 kcal Total: -67.90 6.50 -61.40 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000064931745.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.643 kcal (2) G-P(sol) polarization free energy of solvation -67.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.396 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds