Wall clock time and date at job start Tue Mar 31 2020 06:25:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46497 * 109.47574 * 2 1 4 4 C 1.36748 * 120.00258 * 267.30810 * 3 2 1 5 5 H 1.08005 * 119.99589 * 144.01803 * 4 3 2 6 6 C 1.39094 * 119.99710 * 324.01749 * 4 3 2 7 7 N 1.31341 * 119.99390 * 153.88803 * 6 4 3 8 8 Si 1.86795 * 120.00193 * 333.88700 * 6 4 3 9 9 H 1.48499 * 109.47085 * 94.08296 * 8 6 4 10 10 H 1.48499 * 109.47205 * 214.08002 * 8 6 4 11 11 H 1.48499 * 109.47165 * 334.08469 * 8 6 4 12 12 C 1.34780 * 119.99732 * 87.30531 * 3 2 1 13 13 O 1.21779 * 119.99938 * 180.02562 * 12 3 2 14 14 C 1.41808 * 120.00070 * 0.28066 * 12 3 2 15 15 C 1.35129 * 120.00039 * 179.72841 * 14 12 3 16 16 C 1.46946 * 120.00079 * 179.97438 * 15 14 12 17 17 C 1.40021 * 120.29554 * 359.97438 * 16 15 14 18 18 C 1.37420 * 120.17614 * 180.16010 * 17 16 15 19 19 C 1.39626 * 120.45963 * 359.97438 * 18 17 16 20 20 C 1.39225 * 119.15770 * 359.63920 * 19 18 17 21 21 C 1.37263 * 120.96257 * 0.31005 * 20 19 18 22 22 C 1.51683 * 106.99948 * 180.98168 * 20 19 18 23 23 C 1.54692 * 101.92965 * 15.16724 * 22 20 19 24 24 O 1.36050 * 129.70351 * 179.05999 * 19 18 17 25 25 H 1.08999 * 109.46609 * 299.99711 * 1 2 3 26 26 H 1.08995 * 109.46957 * 59.99344 * 1 2 3 27 27 H 1.08998 * 109.47137 * 179.97438 * 1 2 3 28 28 H 1.09005 * 109.47057 * 240.00252 * 2 1 3 29 29 H 1.09002 * 109.46908 * 120.00306 * 2 1 3 30 30 H 0.96999 * 119.99712 * 179.97438 * 7 6 4 31 31 H 1.08001 * 119.99897 * 359.72104 * 14 12 3 32 32 H 1.08001 * 120.00063 * 359.97438 * 15 14 12 33 33 H 1.08007 * 119.91233 * 0.18873 * 17 16 15 34 34 H 1.07996 * 119.77406 * 179.97438 * 18 17 16 35 35 H 1.07996 * 120.08667 * 179.87721 * 21 20 19 36 36 H 1.09007 * 110.93769 * 133.32633 * 22 20 19 37 37 H 1.09005 * 110.94032 * 256.96883 * 22 20 19 38 38 H 1.08994 * 110.74757 * 93.02021 * 23 22 20 39 39 H 1.08998 * 110.74408 * 216.17982 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0185 1.3811 0.0000 4 6 2.2989 2.0073 -1.1829 5 1 2.0938 3.0614 -1.2978 6 6 2.8481 1.2865 -2.2381 7 7 2.6565 1.6843 -3.4751 8 14 3.8583 -0.2471 -1.8960 9 1 2.9829 -1.4441 -1.9741 10 1 4.9429 -0.3605 -2.9040 11 1 4.4521 -0.1559 -0.5379 12 6 2.1914 2.0347 1.1660 13 8 2.5970 3.1830 1.1660 14 6 1.9062 1.3835 2.3930 15 6 2.0848 2.0369 3.5622 16 6 1.7888 1.3623 4.8336 17 6 1.3208 0.0426 4.8408 18 6 1.0416 -0.5848 6.0310 19 6 1.2214 0.0844 7.2432 20 6 1.6946 1.3937 7.2314 21 6 1.9783 2.0315 6.0496 22 6 1.8075 1.8374 8.6775 23 6 1.7177 0.4907 9.4332 24 8 0.9912 -0.3426 8.5142 25 1 -0.3632 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 -1.0276 -0.0005 28 1 1.8934 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 3.0398 1.1818 -4.2110 31 1 1.5462 0.3653 2.3929 32 1 2.4452 3.0551 3.5622 33 1 1.1794 -0.4838 3.9083 34 1 0.6806 -1.6027 6.0290 35 1 2.3428 3.0481 6.0568 36 1 2.7652 2.3244 8.8619 37 1 0.9805 2.4933 8.9495 38 1 2.7121 0.0850 9.6189 39 1 1.1696 0.6083 10.3680 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000068241086.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:25:06 Heat of formation + Delta-G solvation = -5.930414 kcal Electronic energy + Delta-G solvation = -21796.197667 eV Core-core repulsion = 18477.407502 eV Total energy + Delta-G solvation = -3318.790166 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 287.131 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.18909 -39.07891 -37.74518 -35.28406 -33.31635 -32.74184 -32.27791 -29.79760 -29.68797 -28.88821 -25.66104 -23.63508 -23.22308 -22.81467 -22.07638 -20.42001 -18.23013 -17.54791 -17.03581 -16.73505 -16.60444 -16.24505 -15.61005 -14.79609 -14.24996 -14.13899 -13.93249 -13.52925 -13.41437 -13.28795 -13.17006 -12.83669 -12.66556 -12.41597 -12.13590 -12.05397 -11.85990 -11.68755 -11.38387 -11.27637 -11.01221 -10.78418 -10.69799 -10.13198 -9.92736 -9.48597 -9.10707 -9.00730 -8.51474 -7.83294 -7.64206 -6.50919 -3.93237 0.72152 1.23804 2.23315 3.00637 3.07358 3.20123 3.26390 3.70203 4.09154 4.16072 4.29899 4.35636 4.52226 4.66741 4.73174 4.89800 4.98700 5.09943 5.14825 5.21687 5.39489 5.44423 5.46711 5.53271 5.61217 5.81121 5.90629 5.91437 6.01024 6.18421 6.21871 6.26143 6.29627 6.42522 6.47653 6.73835 6.80715 6.91316 7.04639 7.50144 8.26414 8.49695 8.95060 9.27826 9.80727 10.60549 Molecular weight = 287.13amu Principal moments of inertia in cm(-1) A = 0.032242 B = 0.003401 C = 0.003278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 868.216389 B = 8230.692743 C = 8540.426711 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.082 3.918 3 N -0.450 5.450 4 C -0.309 4.309 5 H 0.108 0.892 6 C 0.061 3.939 7 N -0.849 5.849 8 Si 0.871 3.129 9 H -0.273 1.273 10 H -0.285 1.285 11 H -0.262 1.262 12 C 0.478 3.522 13 O -0.578 6.578 14 C -0.175 4.175 15 C -0.067 4.067 16 C -0.074 4.074 17 C -0.078 4.078 18 C -0.134 4.134 19 C 0.097 3.903 20 C -0.176 4.176 21 C -0.057 4.057 22 C -0.110 4.110 23 C 0.052 3.948 24 O -0.307 6.307 25 H 0.053 0.947 26 H 0.067 0.933 27 H 0.054 0.946 28 H 0.075 0.925 29 H 0.063 0.937 30 H 0.276 0.724 31 H 0.118 0.882 32 H 0.133 0.867 33 H 0.137 0.863 34 H 0.129 0.871 35 H 0.129 0.871 36 H 0.091 0.909 37 H 0.090 0.910 38 H 0.076 0.924 39 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.996 -6.396 21.431 22.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.042 4.042 3 N -0.169 5.169 4 C -0.437 4.437 5 H 0.125 0.875 6 C -0.146 4.146 7 N -0.484 5.484 8 Si 0.698 3.302 9 H -0.200 1.200 10 H -0.211 1.211 11 H -0.186 1.186 12 C 0.271 3.729 13 O -0.464 6.464 14 C -0.195 4.195 15 C -0.088 4.088 16 C -0.075 4.075 17 C -0.096 4.096 18 C -0.153 4.153 19 C 0.052 3.948 20 C -0.177 4.177 21 C -0.075 4.075 22 C -0.147 4.147 23 C -0.024 4.024 24 O -0.221 6.221 25 H 0.072 0.928 26 H 0.086 0.914 27 H 0.073 0.927 28 H 0.092 0.908 29 H 0.081 0.919 30 H 0.086 0.914 31 H 0.136 0.864 32 H 0.151 0.849 33 H 0.154 0.846 34 H 0.146 0.854 35 H 0.147 0.853 36 H 0.110 0.890 37 H 0.108 0.892 38 H 0.094 0.906 39 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -2.897 -6.038 21.239 22.270 hybrid contribution 0.616 -0.840 -0.022 1.042 sum -2.281 -6.877 21.217 22.420 Atomic orbital electron populations 1.22130 0.95974 1.00994 1.02927 1.21901 0.94969 0.85670 1.01617 1.43779 1.55613 1.11467 1.06062 1.19082 1.40563 0.97420 0.86615 0.87485 1.25399 0.96422 0.98172 0.94618 1.69785 1.39744 1.40345 0.98522 0.87053 0.81018 0.82583 0.79559 1.19969 1.21114 1.18564 1.16941 0.83952 0.88122 0.83846 1.90679 1.50336 1.18131 1.87230 1.22408 1.02561 1.00535 0.94029 1.22083 0.97392 0.99611 0.89714 1.18998 1.01444 0.94053 0.92976 1.21177 0.96926 0.94084 0.97377 1.20149 1.05839 1.00474 0.88801 1.19730 0.97044 0.92342 0.85666 1.20642 1.06905 0.94795 0.95311 1.20477 0.97688 0.99637 0.89700 1.21786 1.03986 0.98052 0.90841 1.23805 0.97103 0.88557 0.92887 1.86788 1.66021 1.55911 1.13346 0.92797 0.91366 0.92666 0.90753 0.91873 0.91384 0.86448 0.84909 0.84578 0.85352 0.85297 0.89045 0.89178 0.90621 0.87714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.75 10.22 37.16 0.38 -2.37 16 2 C 0.08 1.63 4.52 -4.04 -0.02 1.61 16 3 N -0.45 -11.02 2.18 -117.99 -0.26 -11.28 16 4 C -0.31 -8.77 9.34 -15.04 -0.14 -8.91 16 5 H 0.11 3.41 7.87 -52.48 -0.41 3.00 16 6 C 0.06 1.68 5.22 -17.44 -0.09 1.59 16 7 N -0.85 -24.11 13.95 55.50 0.77 -23.33 16 8 Si 0.87 20.29 25.31 -169.99 -4.30 15.99 16 9 H -0.27 -5.84 6.57 56.52 0.37 -5.47 16 10 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 11 H -0.26 -6.16 7.11 56.52 0.40 -5.76 16 12 C 0.48 11.50 7.39 -14.89 -0.11 11.39 16 13 O -0.58 -16.11 15.95 5.12 0.08 -16.03 16 14 C -0.17 -3.23 8.26 -39.32 -0.32 -3.56 16 15 C -0.07 -1.11 9.42 -37.16 -0.35 -1.46 16 16 C -0.07 -1.04 5.87 -105.01 -0.62 -1.66 16 17 C -0.08 -0.99 9.39 -39.21 -0.37 -1.35 16 18 C -0.13 -1.60 10.04 -39.36 -0.40 -2.00 16 19 C 0.10 1.20 7.04 -38.70 -0.27 0.92 16 20 C -0.18 -2.02 6.26 -104.13 -0.65 -2.67 16 21 C -0.06 -0.70 9.79 -39.24 -0.38 -1.09 16 22 C -0.11 -0.87 7.12 -26.51 -0.19 -1.06 16 23 C 0.05 0.39 8.00 38.05 0.30 0.69 16 24 O -0.31 -3.51 11.10 -19.90 -0.22 -3.73 16 25 H 0.05 0.86 7.95 -51.93 -0.41 0.45 16 26 H 0.07 1.29 8.14 -51.93 -0.42 0.86 16 27 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 28 H 0.07 1.57 3.45 -51.93 -0.18 1.39 16 29 H 0.06 1.06 6.23 -51.93 -0.32 0.74 16 30 H 0.28 7.21 8.31 -40.82 -0.34 6.87 16 31 H 0.12 1.83 4.17 -52.49 -0.22 1.61 16 32 H 0.13 2.33 7.45 -52.49 -0.39 1.93 16 33 H 0.14 1.54 6.17 -52.48 -0.32 1.22 16 34 H 0.13 1.28 8.06 -52.49 -0.42 0.86 16 35 H 0.13 1.39 8.06 -52.49 -0.42 0.96 16 36 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 LS Contribution 323.74 15.07 4.88 4.88 Total: -1.00 -33.05 323.74 -7.08 -40.14 By element: Atomic # 1 Polarization: 8.11 SS G_CDS: -4.81 Total: 3.30 kcal Atomic # 6 Polarization: -6.70 SS G_CDS: -3.23 Total: -9.93 kcal Atomic # 7 Polarization: -35.13 SS G_CDS: 0.52 Total: -34.62 kcal Atomic # 8 Polarization: -19.62 SS G_CDS: -0.14 Total: -19.76 kcal Atomic # 14 Polarization: 20.29 SS G_CDS: -4.30 Total: 15.99 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -33.05 -7.08 -40.14 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068241086.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.206 kcal (2) G-P(sol) polarization free energy of solvation -33.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.136 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds