Wall clock time and date at job start Tue Mar 31 2020 06:25:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46497 * 109.47574 * 2 1 4 4 C 1.36748 * 120.00258 * 267.30810 * 3 2 1 5 5 H 1.08005 * 119.99589 * 144.01803 * 4 3 2 6 6 C 1.39094 * 119.99710 * 324.01749 * 4 3 2 7 7 N 1.31341 * 119.99390 * 153.88803 * 6 4 3 8 8 Si 1.86795 * 120.00193 * 333.88700 * 6 4 3 9 9 H 1.48499 * 109.47085 * 94.08296 * 8 6 4 10 10 H 1.48499 * 109.47205 * 214.08002 * 8 6 4 11 11 H 1.48499 * 109.47165 * 334.08469 * 8 6 4 12 12 C 1.34780 * 119.99732 * 87.30531 * 3 2 1 13 13 O 1.21779 * 119.99938 * 180.02562 * 12 3 2 14 14 C 1.41808 * 120.00070 * 0.28066 * 12 3 2 15 15 C 1.35129 * 120.00039 * 179.72841 * 14 12 3 16 16 C 1.46946 * 120.00079 * 179.97438 * 15 14 12 17 17 C 1.40021 * 120.29554 * 359.97438 * 16 15 14 18 18 C 1.37420 * 120.17614 * 180.16010 * 17 16 15 19 19 C 1.39626 * 120.45963 * 359.97438 * 18 17 16 20 20 C 1.39225 * 119.15770 * 359.63920 * 19 18 17 21 21 C 1.37263 * 120.96257 * 0.31005 * 20 19 18 22 22 C 1.51683 * 106.99948 * 180.98168 * 20 19 18 23 23 C 1.54692 * 101.92965 * 15.16724 * 22 20 19 24 24 O 1.36050 * 129.70351 * 179.05999 * 19 18 17 25 25 H 1.08999 * 109.46609 * 299.99711 * 1 2 3 26 26 H 1.08995 * 109.46957 * 59.99344 * 1 2 3 27 27 H 1.08998 * 109.47137 * 179.97438 * 1 2 3 28 28 H 1.09005 * 109.47057 * 240.00252 * 2 1 3 29 29 H 1.09002 * 109.46908 * 120.00306 * 2 1 3 30 30 H 0.96999 * 119.99712 * 179.97438 * 7 6 4 31 31 H 1.08001 * 119.99897 * 359.72104 * 14 12 3 32 32 H 1.08001 * 120.00063 * 359.97438 * 15 14 12 33 33 H 1.08007 * 119.91233 * 0.18873 * 17 16 15 34 34 H 1.07996 * 119.77406 * 179.97438 * 18 17 16 35 35 H 1.07996 * 120.08667 * 179.87721 * 21 20 19 36 36 H 1.09007 * 110.93769 * 133.32633 * 22 20 19 37 37 H 1.09005 * 110.94032 * 256.96883 * 22 20 19 38 38 H 1.08994 * 110.74757 * 93.02021 * 23 22 20 39 39 H 1.08998 * 110.74408 * 216.17982 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0185 1.3811 0.0000 4 6 2.2989 2.0073 -1.1829 5 1 2.0938 3.0614 -1.2978 6 6 2.8481 1.2865 -2.2381 7 7 2.6565 1.6843 -3.4751 8 14 3.8583 -0.2471 -1.8960 9 1 2.9829 -1.4441 -1.9741 10 1 4.9429 -0.3605 -2.9040 11 1 4.4521 -0.1559 -0.5379 12 6 2.1914 2.0347 1.1660 13 8 2.5970 3.1830 1.1660 14 6 1.9062 1.3835 2.3930 15 6 2.0848 2.0369 3.5622 16 6 1.7888 1.3623 4.8336 17 6 1.3208 0.0426 4.8408 18 6 1.0416 -0.5848 6.0310 19 6 1.2214 0.0844 7.2432 20 6 1.6946 1.3937 7.2314 21 6 1.9783 2.0315 6.0496 22 6 1.8075 1.8374 8.6775 23 6 1.7177 0.4907 9.4332 24 8 0.9912 -0.3426 8.5142 25 1 -0.3632 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 -1.0276 -0.0005 28 1 1.8934 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 3.0398 1.1818 -4.2110 31 1 1.5462 0.3653 2.3929 32 1 2.4452 3.0551 3.5622 33 1 1.1794 -0.4838 3.9083 34 1 0.6806 -1.6027 6.0290 35 1 2.3428 3.0481 6.0568 36 1 2.7652 2.3244 8.8619 37 1 0.9805 2.4933 8.9495 38 1 2.7121 0.0850 9.6189 39 1 1.1696 0.6083 10.3680 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000068241086.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:25:05 Heat of formation + Delta-G solvation = -27.202347 kcal Electronic energy + Delta-G solvation = -21797.120088 eV Core-core repulsion = 18477.407502 eV Total energy + Delta-G solvation = -3319.712586 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 287.131 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.01822 -40.84233 -38.76159 -37.12385 -34.69207 -34.17428 -33.57223 -31.37515 -30.70552 -29.90094 -27.41091 -24.82079 -24.34442 -24.21479 -22.90371 -21.76474 -19.69611 -18.91711 -18.48002 -18.26706 -17.68710 -17.26851 -16.99307 -16.11148 -15.85416 -15.60480 -15.10207 -14.90269 -14.69343 -14.46682 -14.23471 -14.14227 -13.97231 -13.80564 -13.59958 -13.19106 -12.90325 -12.87908 -12.70163 -12.59827 -12.44856 -12.10049 -11.96017 -11.70122 -11.62663 -11.06557 -10.66380 -10.43858 -9.90782 -9.75671 -8.76490 -8.57787 -6.08880 -0.43753 0.33936 0.97328 1.19119 1.34404 1.44407 2.15329 2.29481 2.43471 2.73899 2.85322 3.07559 3.44127 3.62696 3.78748 3.92541 4.01268 4.06523 4.17729 4.24745 4.39116 4.41123 4.44166 4.51853 4.58076 4.67545 4.83962 4.90152 4.93614 4.99484 5.00767 5.13464 5.20827 5.31790 5.36758 5.43484 5.55226 5.61416 5.68395 6.03298 6.17348 6.57190 6.93804 7.29514 7.89632 8.59672 Molecular weight = 287.13amu Principal moments of inertia in cm(-1) A = 0.032242 B = 0.003401 C = 0.003278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 868.216389 B = 8230.692743 C = 8540.426711 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.073 3.927 3 N -0.464 5.464 4 C -0.337 4.337 5 H 0.043 0.957 6 C 0.017 3.983 7 N -0.898 5.898 8 Si 0.943 3.057 9 H -0.232 1.232 10 H -0.284 1.284 11 H -0.264 1.264 12 C 0.478 3.522 13 O -0.635 6.635 14 C -0.207 4.207 15 C -0.023 4.023 16 C -0.106 4.106 17 C -0.069 4.069 18 C -0.143 4.143 19 C 0.098 3.902 20 C -0.186 4.186 21 C -0.055 4.055 22 C -0.108 4.108 23 C 0.046 3.954 24 O -0.321 6.321 25 H 0.062 0.938 26 H 0.036 0.964 27 H 0.098 0.902 28 H 0.064 0.936 29 H 0.103 0.897 30 H 0.282 0.718 31 H 0.154 0.846 32 H 0.116 0.884 33 H 0.152 0.848 34 H 0.149 0.851 35 H 0.140 0.860 36 H 0.109 0.891 37 H 0.101 0.899 38 H 0.088 0.912 39 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.202 -9.711 25.284 27.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.048 4.048 3 N -0.183 5.183 4 C -0.466 4.466 5 H 0.061 0.939 6 C -0.186 4.186 7 N -0.534 5.534 8 Si 0.765 3.235 9 H -0.156 1.156 10 H -0.211 1.211 11 H -0.188 1.188 12 C 0.273 3.727 13 O -0.524 6.524 14 C -0.227 4.227 15 C -0.044 4.044 16 C -0.106 4.106 17 C -0.087 4.087 18 C -0.162 4.162 19 C 0.052 3.948 20 C -0.187 4.187 21 C -0.073 4.073 22 C -0.144 4.144 23 C -0.028 4.028 24 O -0.235 6.235 25 H 0.081 0.919 26 H 0.055 0.945 27 H 0.117 0.883 28 H 0.082 0.918 29 H 0.121 0.879 30 H 0.092 0.908 31 H 0.172 0.828 32 H 0.134 0.866 33 H 0.170 0.830 34 H 0.167 0.833 35 H 0.157 0.843 36 H 0.128 0.872 37 H 0.119 0.881 38 H 0.106 0.894 39 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -3.133 -9.385 25.110 26.989 hybrid contribution 0.617 0.317 -0.832 1.083 sum -2.516 -9.068 24.278 26.038 Atomic orbital electron populations 1.22078 0.93954 1.03424 1.01847 1.22193 0.96778 0.82946 1.02919 1.43845 1.56480 1.13291 1.04714 1.18613 1.43315 0.95432 0.89195 0.93944 1.26147 0.96541 1.02178 0.93756 1.69880 1.41111 1.42801 0.99639 0.85942 0.79240 0.79446 0.78873 1.15635 1.21073 1.18780 1.17829 0.82029 0.87379 0.85510 1.90631 1.52624 1.20791 1.88329 1.22134 1.06850 1.02269 0.91471 1.22208 0.92845 0.98575 0.90761 1.18879 1.04566 0.95182 0.91966 1.21360 0.95547 0.93322 0.98455 1.20400 1.05804 1.01494 0.88471 1.20068 0.95700 0.92665 0.86330 1.21001 1.06208 0.94778 0.96695 1.20652 0.96856 1.00151 0.89675 1.21909 1.05496 0.98657 0.88379 1.24149 0.98019 0.87628 0.93017 1.86781 1.66519 1.56861 1.13325 0.91901 0.94504 0.88316 0.91762 0.87902 0.90777 0.82841 0.86579 0.83005 0.83333 0.84256 0.87241 0.88061 0.89351 0.84966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.98 10.22 71.98 0.74 -4.24 16 2 C 0.07 2.79 4.52 86.38 0.39 3.18 16 3 N -0.46 -23.37 2.18 -645.40 -1.41 -24.78 16 4 C -0.34 -20.45 9.34 84.13 0.79 -19.66 16 5 H 0.04 3.02 7.87 -2.91 -0.02 3.00 16 6 C 0.02 0.99 5.22 84.97 0.44 1.44 16 7 N -0.90 -53.59 13.95 21.69 0.30 -53.29 16 8 Si 0.94 42.01 25.31 68.60 1.74 43.75 16 9 H -0.23 -8.80 6.57 99.48 0.65 -8.15 16 10 H -0.28 -12.52 7.11 99.48 0.71 -11.82 16 11 H -0.26 -11.76 7.11 99.48 0.71 -11.05 16 12 C 0.48 23.70 7.39 85.12 0.63 24.33 16 13 O -0.63 -37.62 15.95 -4.60 -0.07 -37.70 16 14 C -0.21 -7.47 8.26 22.44 0.19 -7.28 16 15 C -0.02 -0.74 9.42 23.84 0.22 -0.51 16 16 C -0.11 -2.71 5.87 -20.12 -0.12 -2.83 16 17 C -0.07 -1.52 9.39 22.51 0.21 -1.31 16 18 C -0.14 -2.91 10.04 22.41 0.23 -2.68 16 19 C 0.10 2.08 7.04 22.84 0.16 2.24 16 20 C -0.19 -3.69 6.26 -19.54 -0.12 -3.81 16 21 C -0.06 -1.24 9.79 22.49 0.22 -1.02 16 22 C -0.11 -1.30 7.12 30.74 0.22 -1.08 16 23 C 0.05 0.50 8.00 72.56 0.58 1.08 16 24 O -0.32 -6.17 11.10 -94.12 -1.04 -7.22 16 25 H 0.06 1.89 7.95 -2.39 -0.02 1.87 16 26 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 27 H 0.10 2.30 8.14 -2.39 -0.02 2.28 16 28 H 0.06 2.56 3.45 -2.38 -0.01 2.55 16 29 H 0.10 3.06 6.23 -2.39 -0.01 3.04 16 30 H 0.28 15.31 8.31 -92.71 -0.77 14.54 16 31 H 0.15 4.28 4.17 -2.91 -0.01 4.26 16 32 H 0.12 4.13 7.45 -2.91 -0.02 4.11 16 33 H 0.15 2.78 6.17 -2.91 -0.02 2.76 16 34 H 0.15 2.37 8.06 -2.91 -0.02 2.34 16 35 H 0.14 2.73 8.06 -2.91 -0.02 2.71 16 36 H 0.11 0.95 8.14 -2.38 -0.02 0.93 16 37 H 0.10 1.03 8.14 -2.38 -0.02 1.01 16 38 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 39 H 0.13 0.72 8.14 -2.39 -0.02 0.70 16 Total: -1.00 -79.50 323.74 5.30 -74.20 By element: Atomic # 1 Polarization: 16.17 SS G_CDS: 1.02 Total: 17.19 kcal Atomic # 6 Polarization: -16.93 SS G_CDS: 4.77 Total: -12.15 kcal Atomic # 7 Polarization: -76.96 SS G_CDS: -1.11 Total: -78.07 kcal Atomic # 8 Polarization: -43.80 SS G_CDS: -1.12 Total: -44.91 kcal Atomic # 14 Polarization: 42.01 SS G_CDS: 1.74 Total: 43.75 kcal Total: -79.50 5.30 -74.20 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068241086.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.998 kcal (2) G-P(sol) polarization free energy of solvation -79.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.200 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds