Wall clock time and date at job start Tue Mar 31 2020 06:34:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.34781 * 119.99911 * 2 1 4 4 O 1.21721 * 119.99512 * 179.97438 * 3 2 1 5 5 C 1.46253 * 119.99694 * 359.71844 * 3 2 1 6 6 C 1.35019 * 119.99702 * 180.27266 * 5 3 2 7 7 C 1.46964 * 120.00344 * 180.02562 * 6 5 3 8 8 C 1.40025 * 120.09575 * 359.72696 * 7 6 5 9 9 C 1.37595 * 119.89608 * 179.76588 * 8 7 6 10 10 C 1.39177 * 120.10243 * 0.51209 * 9 8 7 11 11 O 1.35561 * 119.90215 * 179.76318 * 10 9 8 12 12 C 1.34788 * 117.00372 * 174.42383 * 11 10 9 13 13 H 1.08000 * 119.99478 * 5.05070 * 12 11 10 14 14 C 1.38714 * 120.00043 * 185.05895 * 12 11 10 15 15 N 1.31509 * 120.00061 * 180.02562 * 14 12 11 16 16 Si 1.86801 * 120.00283 * 359.97438 * 14 12 11 17 17 H 1.48500 * 109.47212 * 90.00393 * 16 14 12 18 18 H 1.48500 * 109.47534 * 210.00326 * 16 14 12 19 19 H 1.48504 * 109.47229 * 330.00558 * 16 14 12 20 20 C 1.39177 * 120.20074 * 359.74419 * 10 9 8 21 21 C 1.37603 * 120.10311 * 359.97438 * 20 10 9 22 22 C 1.46495 * 120.00050 * 179.97438 * 2 1 3 23 23 C 1.53003 * 117.50194 * 8.62686 * 22 2 1 24 24 C 1.53003 * 117.50085 * 300.00211 * 22 2 1 25 25 H 1.09000 * 109.46571 * 90.00484 * 1 2 3 26 26 H 1.09002 * 109.46632 * 210.00359 * 1 2 3 27 27 H 1.08996 * 109.47034 * 330.00064 * 1 2 3 28 28 H 1.07999 * 120.00058 * 0.28436 * 5 3 2 29 29 H 1.08009 * 120.00232 * 0.02562 * 6 5 3 30 30 H 1.08002 * 120.05521 * 0.02562 * 8 7 6 31 31 H 1.08004 * 119.94983 * 180.23538 * 9 8 7 32 32 H 0.96994 * 120.00375 * 179.97438 * 15 14 12 33 33 H 1.07997 * 119.95049 * 179.97438 * 20 10 9 34 34 H 1.07992 * 120.04891 * 180.02562 * 21 20 10 35 35 H 1.09001 * 115.55004 * 154.33317 * 22 2 1 36 36 H 1.08999 * 117.49463 * 359.97438 * 23 22 2 37 37 H 1.08997 * 117.50307 * 145.01436 * 23 22 2 38 38 H 1.09004 * 117.49676 * 214.97589 * 24 22 2 39 39 H 1.08993 * 117.49848 * 0.02562 * 24 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3562 1.1672 0.0005 5 6 1.4076 2.4338 -0.0062 6 6 2.0827 3.6031 -0.0118 7 6 1.3479 4.8758 -0.0175 8 6 -0.0523 4.8782 -0.0229 9 6 -0.7361 6.0723 -0.0233 10 6 -0.0381 7.2764 -0.0292 11 8 -0.7159 8.4504 -0.0344 12 6 0.0133 9.5785 0.0768 13 1 1.0920 9.5258 0.0826 14 6 -0.6218 10.8071 0.1839 15 7 0.0897 11.9078 0.2920 16 14 -2.4875 10.8982 0.1734 17 1 -2.9961 10.7935 1.5646 18 1 -2.9167 12.1926 -0.4144 19 1 -3.0332 9.7808 -0.6385 20 6 1.3537 7.2788 -0.0292 21 6 2.0459 6.0896 -0.0229 22 6 2.1975 -1.2687 0.0006 23 6 1.3888 -2.5515 -0.2024 24 6 1.9631 -2.2193 1.1763 25 1 -0.3632 -0.0001 -1.0277 26 1 -0.3633 -0.8900 0.5139 27 1 -0.3633 0.8900 0.5138 28 1 0.3276 2.4337 -0.0062 29 1 3.1628 3.6031 -0.0121 30 1 -0.5948 3.9444 -0.0225 31 1 -1.8161 6.0751 -0.0237 32 1 -0.3544 12.7669 0.3665 33 1 1.8912 8.2155 -0.0341 34 1 3.1259 6.0926 -0.0225 35 1 3.2002 -1.2328 -0.4254 36 1 0.3117 -2.4515 -0.3360 37 1 1.8592 -3.3599 -0.7622 38 1 2.8115 -2.8092 1.5235 39 1 1.2636 -1.9010 1.9491 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000073565547.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:49 Heat of formation + Delta-G solvation = 14.675812 kcal Electronic energy + Delta-G solvation = -20958.131691 eV Core-core repulsion = 17640.235079 eV Total energy + Delta-G solvation = -3317.896613 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 287.131 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.05733 -39.33959 -37.55343 -36.95074 -34.02707 -33.11852 -32.43896 -30.54356 -28.48342 -27.25110 -25.73756 -24.01186 -22.69677 -22.34414 -21.61423 -20.01622 -18.75453 -18.01685 -17.62795 -17.32498 -16.55189 -15.56230 -15.05552 -15.02357 -14.60911 -14.26082 -14.06561 -13.95573 -13.71866 -13.17929 -12.92720 -12.84548 -12.66235 -12.47857 -12.40834 -11.90315 -11.86869 -11.64721 -11.25929 -11.21130 -11.02717 -10.83097 -10.75645 -10.28641 -9.80570 -9.66529 -9.55895 -8.94716 -8.62445 -8.48248 -7.25420 -6.61277 -4.25107 0.96213 2.02243 2.43647 2.79857 3.10912 3.14886 3.27968 3.34809 3.67561 4.07912 4.40919 4.41884 4.58616 4.61759 4.65373 4.74785 4.90542 4.93058 5.08936 5.21037 5.28102 5.38969 5.42945 5.47886 5.56300 5.59115 5.70097 5.74002 5.92796 6.01124 6.24436 6.28571 6.49518 6.53804 6.66211 6.91307 7.07679 7.14216 7.32584 7.40548 7.61813 7.83137 8.22697 8.71936 9.32060 10.44960 Molecular weight = 287.13amu Principal moments of inertia in cm(-1) A = 0.043647 B = 0.002575 C = 0.002452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 641.360313 B =10870.975188 C =11414.954877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.075 3.925 2 N -0.594 5.594 3 C 0.559 3.441 4 O -0.553 6.553 5 C -0.280 4.280 6 C 0.038 3.962 7 C -0.190 4.190 8 C -0.045 4.045 9 C -0.199 4.199 10 C 0.174 3.826 11 O -0.202 6.202 12 C -0.392 4.392 13 H 0.111 0.889 14 C 0.066 3.934 15 N -0.867 5.867 16 Si 0.907 3.093 17 H -0.271 1.271 18 H -0.280 1.280 19 H -0.258 1.258 20 C -0.230 4.230 21 C -0.036 4.036 22 C 0.085 3.915 23 C -0.188 4.188 24 C -0.195 4.195 25 H 0.058 0.942 26 H 0.069 0.931 27 H 0.080 0.920 28 H 0.127 0.873 29 H 0.125 0.875 30 H 0.119 0.881 31 H 0.121 0.879 32 H 0.283 0.717 33 H 0.138 0.862 34 H 0.117 0.883 35 H 0.132 0.868 36 H 0.100 0.900 37 H 0.102 0.898 38 H 0.100 0.900 39 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.230 -22.200 -0.285 22.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.326 5.326 3 C 0.353 3.647 4 O -0.433 6.433 5 C -0.301 4.301 6 C 0.018 3.982 7 C -0.191 4.191 8 C -0.063 4.063 9 C -0.218 4.218 10 C 0.119 3.881 11 O -0.105 6.105 12 C -0.467 4.467 13 H 0.128 0.872 14 C -0.140 4.140 15 N -0.502 5.502 16 Si 0.732 3.268 17 H -0.196 1.196 18 H -0.205 1.205 19 H -0.182 1.182 20 C -0.249 4.249 21 C -0.054 4.054 22 C -0.020 4.020 23 C -0.226 4.226 24 C -0.234 4.234 25 H 0.077 0.923 26 H 0.087 0.913 27 H 0.098 0.902 28 H 0.144 0.856 29 H 0.142 0.858 30 H 0.137 0.863 31 H 0.139 0.861 32 H 0.094 0.906 33 H 0.155 0.845 34 H 0.135 0.865 35 H 0.149 0.851 36 H 0.118 0.882 37 H 0.121 0.879 38 H 0.119 0.881 39 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -0.859 -21.829 -0.291 21.847 hybrid contribution -0.799 0.193 0.059 0.824 sum -1.658 -21.635 -0.233 21.700 Atomic orbital electron populations 1.21856 0.79490 1.03303 1.02118 1.47144 1.06515 1.04679 1.74269 1.18409 0.87095 0.83861 0.75287 1.90769 1.13896 1.87618 1.51029 1.22533 1.00067 0.91281 1.16208 1.22331 0.99449 0.90901 0.85538 1.18521 0.93078 0.92080 1.15400 1.20868 0.92964 0.96598 0.95897 1.20141 0.99602 0.89947 1.12160 1.19360 0.90726 0.86209 0.91796 1.83502 1.36799 1.12352 1.77827 1.20880 0.92874 0.81326 1.51586 0.87180 1.24544 1.00686 0.93570 0.95156 1.69613 1.36900 0.98241 1.45471 0.86154 0.83032 0.78228 0.79389 1.19633 1.20512 1.18197 1.21226 0.93918 0.99047 1.10690 1.21045 0.98864 0.91251 0.94287 1.21564 0.97456 0.80422 1.02512 1.23380 1.00492 0.98577 1.00170 1.23395 1.03946 1.03847 0.92204 0.92325 0.91251 0.90187 0.85559 0.85755 0.86333 0.86106 0.90641 0.84483 0.86493 0.85055 0.88207 0.87945 0.88118 0.88606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.58 9.39 59.85 0.56 1.15 16 2 N -0.59 -6.67 3.21 -175.63 -0.56 -7.24 16 3 C 0.56 8.06 7.60 -13.04 -0.10 7.96 16 4 O -0.55 -9.80 15.94 5.17 0.08 -9.72 16 5 C -0.28 -3.76 8.61 -37.51 -0.32 -4.08 16 6 C 0.04 0.56 9.45 -37.19 -0.35 0.20 16 7 C -0.19 -3.10 5.87 -105.03 -0.62 -3.71 16 8 C -0.05 -0.71 9.40 -39.15 -0.37 -1.08 16 9 C -0.20 -3.65 9.97 -39.47 -0.39 -4.05 16 10 C 0.17 3.76 6.66 -38.88 -0.26 3.50 16 11 O -0.20 -5.02 8.57 0.75 0.01 -5.01 16 12 C -0.39 -10.46 9.94 30.91 0.31 -10.15 16 13 H 0.11 2.99 5.41 -52.49 -0.28 2.71 16 14 C 0.07 1.76 5.49 -17.51 -0.10 1.66 16 15 N -0.87 -23.86 13.96 55.48 0.77 -23.09 16 16 Si 0.91 20.50 28.62 -169.99 -4.86 15.64 16 17 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 18 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 19 H -0.26 -5.83 7.11 56.52 0.40 -5.43 16 20 C -0.23 -4.67 9.14 -39.46 -0.36 -5.03 16 21 C -0.04 -0.63 9.78 -39.15 -0.38 -1.01 16 22 C 0.09 0.85 6.21 -67.93 -0.42 0.43 16 23 C -0.19 -1.30 9.72 -26.73 -0.26 -1.56 16 24 C -0.20 -1.54 10.13 -26.73 -0.27 -1.82 16 25 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 26 H 0.07 0.42 6.32 -51.93 -0.33 0.09 16 27 H 0.08 0.59 6.10 -51.93 -0.32 0.27 16 28 H 0.13 1.42 4.21 -52.49 -0.22 1.20 16 29 H 0.12 1.85 7.52 -52.48 -0.39 1.45 16 30 H 0.12 1.49 6.16 -52.49 -0.32 1.17 16 31 H 0.12 2.02 8.06 -52.48 -0.42 1.60 16 32 H 0.28 7.18 8.31 -40.82 -0.34 6.84 16 33 H 0.14 2.91 5.62 -52.49 -0.29 2.62 16 34 H 0.12 1.74 8.06 -52.49 -0.42 1.32 16 35 H 0.13 1.46 7.67 -51.93 -0.40 1.06 16 36 H 0.10 0.60 6.46 -51.93 -0.34 0.27 16 37 H 0.10 0.59 8.14 -51.93 -0.42 0.16 16 38 H 0.10 0.71 8.14 -51.93 -0.42 0.28 16 39 H 0.10 0.76 8.12 -51.93 -0.42 0.33 16 LS Contribution 331.45 15.07 4.99 4.99 Total: -1.00 -29.95 331.45 -7.47 -37.42 By element: Atomic # 1 Polarization: 9.15 SS G_CDS: -4.57 Total: 4.59 kcal Atomic # 6 Polarization: -14.25 SS G_CDS: -3.33 Total: -17.59 kcal Atomic # 7 Polarization: -30.53 SS G_CDS: 0.21 Total: -30.32 kcal Atomic # 8 Polarization: -14.82 SS G_CDS: 0.09 Total: -14.73 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -4.86 Total: 15.64 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -29.95 -7.47 -37.42 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000073565547.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.098 kcal (2) G-P(sol) polarization free energy of solvation -29.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.423 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds