Wall clock time and date at job start Tue Mar 31 2020 05:51:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50699 * 109.46866 * 2 1 4 4 O 1.21296 * 119.99979 * 359.97438 * 3 2 1 5 5 C 1.46864 * 120.00149 * 180.02562 * 3 2 1 6 6 C 1.40036 * 120.10773 * 359.72629 * 5 3 2 7 7 C 1.37120 * 119.87910 * 179.76922 * 6 5 3 8 8 C 1.39085 * 120.11455 * 0.50544 * 7 6 5 9 9 O 1.35660 * 119.88216 * 179.76794 * 8 7 6 10 10 C 1.42900 * 117.00430 * 359.97438 * 9 8 7 11 11 C 1.52997 * 109.47092 * 180.02562 * 10 9 8 12 12 H 1.08995 * 109.47257 * 304.99985 * 11 10 9 13 13 C 1.47196 * 109.47156 * 65.00301 * 11 10 9 14 14 N 9.60122 * 156.86927 * 36.23453 * 2 1 3 15 15 C 1.53004 * 109.46840 * 184.99903 * 11 10 9 16 16 C 1.50703 * 109.46785 * 175.00227 * 15 11 10 17 17 H 1.07995 * 120.00314 * 359.97438 * 16 15 11 18 18 C 1.37883 * 119.99919 * 180.02562 * 16 15 11 19 19 N 1.31510 * 120.00094 * 180.02562 * 18 16 15 20 20 Si 1.86799 * 119.99761 * 359.97438 * 18 16 15 21 21 H 1.48498 * 109.46939 * 90.00411 * 20 18 16 22 22 H 1.48500 * 109.47034 * 210.00589 * 20 18 16 23 23 H 1.48500 * 109.47381 * 330.00494 * 20 18 16 24 24 C 1.39075 * 120.23104 * 359.74377 * 8 7 6 25 25 C 1.37119 * 120.11427 * 359.97438 * 24 8 7 26 26 H 1.09001 * 109.46801 * 60.00064 * 1 2 3 27 27 H 1.09001 * 109.46998 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47050 * 299.99952 * 1 2 3 29 29 H 1.08993 * 109.46955 * 120.00219 * 2 1 3 30 30 H 1.09000 * 109.47050 * 240.00048 * 2 1 3 31 31 H 1.08002 * 120.06573 * 0.02562 * 6 5 3 32 32 H 1.08001 * 119.94432 * 180.22789 * 7 6 5 33 33 H 1.09002 * 109.47149 * 300.00103 * 10 9 8 34 34 H 1.09001 * 109.47163 * 60.00273 * 10 9 8 35 35 H 1.08996 * 109.47580 * 294.99971 * 15 11 10 36 36 H 1.08997 * 109.46884 * 55.00388 * 15 11 10 37 37 H 0.96998 * 119.99745 * 179.97438 * 19 18 16 38 38 H 1.08000 * 119.94769 * 179.97438 * 24 8 7 39 39 H 1.08005 * 120.05827 * 179.97438 * 25 24 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 1.2441 2.3427 -0.0005 5 6 3.4762 1.6893 -0.0006 6 6 4.3883 0.6267 0.0047 7 6 5.7354 0.8827 -0.0007 8 6 6.1963 2.1949 -0.0007 9 8 7.5301 2.4428 -0.0012 10 6 8.4006 1.3096 -0.0012 11 6 9.8552 1.7839 -0.0012 12 1 10.0179 2.4569 -0.8430 13 6 10.1399 2.4936 1.2566 14 7 10.3594 3.0422 2.2294 15 6 10.7856 0.5758 -0.1269 16 6 12.2107 1.0500 -0.2503 17 1 12.4308 2.1072 -0.2406 18 6 13.2335 0.1340 -0.3768 19 7 14.4772 0.5478 -0.4840 20 14 12.8527 -1.6947 -0.3944 21 1 12.6169 -2.1377 -1.7919 22 1 14.0006 -2.4448 0.1758 23 1 11.6380 -1.9552 0.4192 24 6 5.2947 3.2538 -0.0006 25 6 3.9456 3.0087 -0.0011 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8933 -0.5138 0.8899 30 1 1.8934 -0.5138 -0.8900 31 1 4.0314 -0.3927 0.0087 32 1 6.4397 0.0640 -0.0004 33 1 8.2148 0.7087 0.8890 34 1 8.2142 0.7082 -0.8910 35 1 10.6871 -0.0524 0.7585 36 1 10.5161 0.0003 -1.0125 37 1 15.1968 -0.0966 -0.5726 38 1 5.6576 4.2710 -0.0002 39 1 3.2462 3.8317 -0.0007 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000119251942.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:44 Heat of formation + Delta-G solvation = -40.205034 kcal Electronic energy + Delta-G solvation = -20948.728012 eV Core-core repulsion = 17628.451588 eV Total energy + Delta-G solvation = -3320.276425 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 287.131 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.64680 -39.58974 -37.60388 -36.25136 -33.95696 -33.32103 -32.21594 -31.35823 -30.48797 -27.97084 -25.54325 -24.26164 -23.26364 -21.90533 -21.65598 -19.85508 -18.45684 -17.39885 -17.14867 -16.90176 -16.20559 -15.76186 -15.43166 -15.20158 -14.60337 -14.49266 -13.91001 -13.75718 -13.57062 -13.50442 -13.24965 -12.77596 -12.54672 -12.54144 -12.47711 -12.29520 -12.07431 -11.68912 -11.51791 -11.42373 -11.28994 -10.96934 -10.82023 -10.56144 -10.24135 -9.95368 -9.92534 -9.48075 -9.38088 -8.72759 -8.44534 -6.21064 -4.23510 0.49323 1.11100 2.20040 2.95829 3.17188 3.24993 3.27160 3.44507 3.50471 3.55655 3.75938 4.27709 4.40414 4.46415 4.60242 4.64183 4.75727 4.83998 4.96628 5.01674 5.12478 5.13991 5.18698 5.27392 5.40411 5.47325 5.47678 5.57156 5.71169 5.82623 5.85924 5.95840 6.01340 6.06967 6.15729 6.43581 6.70652 6.91316 7.17719 7.31926 7.48571 8.24387 8.30482 8.81663 9.37070 10.91732 Molecular weight = 287.13amu Principal moments of inertia in cm(-1) A = 0.026364 B = 0.002888 C = 0.002666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1061.799539 B = 9694.170514 C =10499.835366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.171 4.171 3 C 0.400 3.600 4 O -0.463 6.463 5 C -0.225 4.225 6 C -0.028 4.028 7 C -0.226 4.226 8 C 0.176 3.824 9 O -0.306 6.306 10 C 0.060 3.940 11 C 0.023 3.977 12 H 0.120 0.880 13 C 0.238 3.762 14 N -0.457 5.457 15 C -0.002 4.002 16 C -0.532 4.532 17 H 0.076 0.924 18 C 0.073 3.927 19 N -0.893 5.893 20 Si 0.878 3.122 21 H -0.273 1.273 22 H -0.286 1.286 23 H -0.264 1.264 24 C -0.169 4.169 25 C -0.020 4.020 26 H 0.059 0.941 27 H 0.060 0.940 28 H 0.059 0.941 29 H 0.098 0.902 30 H 0.098 0.902 31 H 0.133 0.867 32 H 0.139 0.861 33 H 0.072 0.928 34 H 0.087 0.913 35 H 0.029 0.971 36 H 0.038 0.962 37 H 0.266 0.734 38 H 0.138 0.862 39 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.302 -3.951 -2.122 24.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.209 4.209 3 C 0.279 3.721 4 O -0.339 6.339 5 C -0.226 4.226 6 C -0.046 4.046 7 C -0.245 4.245 8 C 0.129 3.871 9 O -0.218 6.218 10 C -0.016 4.016 11 C 0.001 3.999 12 H 0.138 0.862 13 C -0.079 4.079 14 N -0.133 5.133 15 C -0.040 4.040 16 C -0.570 4.570 17 H 0.094 0.906 18 C -0.130 4.130 19 N -0.530 5.530 20 Si 0.704 3.296 21 H -0.199 1.199 22 H -0.212 1.212 23 H -0.189 1.189 24 C -0.188 4.188 25 C -0.038 4.038 26 H 0.079 0.921 27 H 0.079 0.921 28 H 0.078 0.922 29 H 0.116 0.884 30 H 0.117 0.883 31 H 0.151 0.849 32 H 0.157 0.843 33 H 0.090 0.910 34 H 0.105 0.895 35 H 0.047 0.953 36 H 0.056 0.944 37 H 0.076 0.924 38 H 0.156 0.844 39 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -24.060 -2.515 -0.667 24.201 hybrid contribution 0.221 -1.503 -0.405 1.572 sum -23.839 -4.018 -1.072 24.199 Atomic orbital electron populations 1.21592 0.93721 1.01742 1.03062 1.21994 0.98304 0.95986 1.04599 1.22348 0.87805 0.91079 0.70828 1.90515 1.58443 1.47779 1.37188 1.20338 0.94836 0.94312 1.13093 1.21083 0.92130 0.98642 0.92787 1.21225 0.97099 0.95966 1.10169 1.19458 0.83559 0.93471 0.90661 1.86115 1.13213 1.35826 1.86626 1.23206 0.88135 0.87258 1.03001 1.19015 0.91581 0.99376 0.89934 0.86214 1.28837 0.92066 0.92773 0.94249 1.81137 1.09451 1.10500 1.12190 1.19635 0.94949 0.91309 0.98135 1.20935 0.88395 0.95667 1.51998 0.90563 1.24980 0.94867 0.99019 0.94134 1.69892 0.99275 1.34852 1.48986 0.86821 0.78492 0.85455 0.78810 1.19893 1.21162 1.18871 1.20354 0.91680 0.98787 1.07960 1.21065 0.94600 0.96266 0.91868 0.92143 0.92089 0.92156 0.88383 0.88345 0.84880 0.84311 0.90977 0.89504 0.95322 0.94426 0.92375 0.84446 0.84454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.95 9.20 37.16 0.34 -0.61 16 2 C -0.17 -1.08 5.02 -27.88 -0.14 -1.22 16 3 C 0.40 3.86 7.11 -30.82 -0.22 3.64 16 4 O -0.46 -5.86 15.97 5.54 0.09 -5.77 16 5 C -0.22 -2.21 5.87 -105.06 -0.62 -2.83 16 6 C -0.03 -0.24 9.44 -39.31 -0.37 -0.61 16 7 C -0.23 -2.21 8.99 -39.67 -0.36 -2.56 16 8 C 0.18 2.07 6.70 -38.96 -0.26 1.81 16 9 O -0.31 -4.08 9.86 -18.68 -0.18 -4.27 16 10 C 0.06 0.75 4.09 37.16 0.15 0.90 16 11 C 0.02 0.37 2.45 -93.41 -0.23 0.14 16 12 H 0.12 1.88 8.14 -51.93 -0.42 1.45 16 13 C 0.24 4.70 13.72 -20.69 -0.28 4.42 16 14 N -0.46 -10.00 18.55 42.24 0.78 -9.21 16 15 C 0.00 -0.04 3.49 -27.88 -0.10 -0.13 16 16 C -0.53 -13.66 9.15 -34.44 -0.32 -13.98 16 17 H 0.08 2.17 7.84 -52.49 -0.41 1.76 16 18 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 19 N -0.89 -26.10 13.96 55.43 0.77 -25.32 16 20 Si 0.88 19.56 27.47 -169.99 -4.67 14.89 16 21 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 22 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 23 H -0.26 -5.48 6.54 56.52 0.37 -5.11 16 24 C -0.17 -1.88 9.95 -39.68 -0.39 -2.28 16 25 C -0.02 -0.21 9.57 -39.31 -0.38 -0.58 16 26 H 0.06 0.45 8.10 -51.93 -0.42 0.03 16 27 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16 28 H 0.06 0.45 8.10 -51.93 -0.42 0.03 16 29 H 0.10 0.46 8.08 -51.93 -0.42 0.04 16 30 H 0.10 0.45 8.09 -51.93 -0.42 0.03 16 31 H 0.13 0.71 7.04 -52.49 -0.37 0.34 16 32 H 0.14 1.13 6.27 -52.49 -0.33 0.80 16 33 H 0.07 0.84 7.65 -51.93 -0.40 0.44 16 34 H 0.09 0.86 7.65 -51.93 -0.40 0.47 16 35 H 0.03 0.57 7.20 -51.93 -0.37 0.19 16 36 H 0.04 0.67 7.57 -51.93 -0.39 0.27 16 37 H 0.27 7.28 8.31 -40.82 -0.34 6.94 16 38 H 0.14 1.40 8.06 -52.49 -0.42 0.98 16 39 H 0.14 1.35 7.64 -52.48 -0.40 0.95 16 LS Contribution 340.63 15.07 5.13 5.13 Total: -1.00 -32.14 340.63 -6.53 -38.66 By element: Atomic # 1 Polarization: 3.09 SS G_CDS: -5.19 Total: -2.10 kcal Atomic # 6 Polarization: -8.75 SS G_CDS: -3.26 Total: -12.01 kcal Atomic # 7 Polarization: -36.10 SS G_CDS: 1.56 Total: -34.54 kcal Atomic # 8 Polarization: -9.94 SS G_CDS: -0.10 Total: -10.03 kcal Atomic # 14 Polarization: 19.56 SS G_CDS: -4.67 Total: 14.89 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -32.14 -6.53 -38.66 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000119251942.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.543 kcal (2) G-P(sol) polarization free energy of solvation -32.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.663 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds