Wall clock time and date at job start Tue Mar 31 2020 05:51:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50699 * 109.46866 * 2 1 4 4 O 1.21296 * 119.99979 * 359.97438 * 3 2 1 5 5 C 1.46864 * 120.00149 * 180.02562 * 3 2 1 6 6 C 1.40036 * 120.10773 * 359.72629 * 5 3 2 7 7 C 1.37120 * 119.87910 * 179.76922 * 6 5 3 8 8 C 1.39085 * 120.11455 * 0.50544 * 7 6 5 9 9 O 1.35660 * 119.88216 * 179.76794 * 8 7 6 10 10 C 1.42900 * 117.00430 * 359.97438 * 9 8 7 11 11 C 1.52997 * 109.47092 * 180.02562 * 10 9 8 12 12 H 1.08995 * 109.47257 * 304.99985 * 11 10 9 13 13 C 1.47196 * 109.47156 * 65.00301 * 11 10 9 14 14 N 9.60122 * 156.86927 * 36.23453 * 2 1 3 15 15 C 1.53004 * 109.46840 * 184.99903 * 11 10 9 16 16 C 1.50703 * 109.46785 * 175.00227 * 15 11 10 17 17 H 1.07995 * 120.00314 * 359.97438 * 16 15 11 18 18 C 1.37883 * 119.99919 * 180.02562 * 16 15 11 19 19 N 1.31510 * 120.00094 * 180.02562 * 18 16 15 20 20 Si 1.86799 * 119.99761 * 359.97438 * 18 16 15 21 21 H 1.48498 * 109.46939 * 90.00411 * 20 18 16 22 22 H 1.48500 * 109.47034 * 210.00589 * 20 18 16 23 23 H 1.48500 * 109.47381 * 330.00494 * 20 18 16 24 24 C 1.39075 * 120.23104 * 359.74377 * 8 7 6 25 25 C 1.37119 * 120.11427 * 359.97438 * 24 8 7 26 26 H 1.09001 * 109.46801 * 60.00064 * 1 2 3 27 27 H 1.09001 * 109.46998 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47050 * 299.99952 * 1 2 3 29 29 H 1.08993 * 109.46955 * 120.00219 * 2 1 3 30 30 H 1.09000 * 109.47050 * 240.00048 * 2 1 3 31 31 H 1.08002 * 120.06573 * 0.02562 * 6 5 3 32 32 H 1.08001 * 119.94432 * 180.22789 * 7 6 5 33 33 H 1.09002 * 109.47149 * 300.00103 * 10 9 8 34 34 H 1.09001 * 109.47163 * 60.00273 * 10 9 8 35 35 H 1.08996 * 109.47580 * 294.99971 * 15 11 10 36 36 H 1.08997 * 109.46884 * 55.00388 * 15 11 10 37 37 H 0.96998 * 119.99745 * 179.97438 * 19 18 16 38 38 H 1.08000 * 119.94769 * 179.97438 * 24 8 7 39 39 H 1.08005 * 120.05827 * 179.97438 * 25 24 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 1.2441 2.3427 -0.0005 5 6 3.4762 1.6893 -0.0006 6 6 4.3883 0.6267 0.0047 7 6 5.7354 0.8827 -0.0007 8 6 6.1963 2.1949 -0.0007 9 8 7.5301 2.4428 -0.0012 10 6 8.4006 1.3096 -0.0012 11 6 9.8552 1.7839 -0.0012 12 1 10.0179 2.4569 -0.8430 13 6 10.1399 2.4936 1.2566 14 7 10.3594 3.0422 2.2294 15 6 10.7856 0.5758 -0.1269 16 6 12.2107 1.0500 -0.2503 17 1 12.4308 2.1072 -0.2406 18 6 13.2335 0.1340 -0.3768 19 7 14.4772 0.5478 -0.4840 20 14 12.8527 -1.6947 -0.3944 21 1 12.6169 -2.1377 -1.7919 22 1 14.0006 -2.4448 0.1758 23 1 11.6380 -1.9552 0.4192 24 6 5.2947 3.2538 -0.0006 25 6 3.9456 3.0087 -0.0011 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8933 -0.5138 0.8899 30 1 1.8934 -0.5138 -0.8900 31 1 4.0314 -0.3927 0.0087 32 1 6.4397 0.0640 -0.0004 33 1 8.2148 0.7087 0.8890 34 1 8.2142 0.7082 -0.8910 35 1 10.6871 -0.0524 0.7585 36 1 10.5161 0.0003 -1.0125 37 1 15.1968 -0.0966 -0.5726 38 1 5.6576 4.2710 -0.0002 39 1 3.2462 3.8317 -0.0007 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000119251942.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:43 Heat of formation + Delta-G solvation = -59.088091 kcal Electronic energy + Delta-G solvation = -20949.546843 eV Core-core repulsion = 17628.451588 eV Total energy + Delta-G solvation = -3321.095255 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 287.131 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.44665 -40.41916 -38.62646 -37.56737 -35.61640 -34.05318 -33.81097 -32.10232 -31.31765 -29.44269 -26.39796 -25.32852 -24.03670 -23.29979 -22.69775 -20.54502 -19.33930 -18.91680 -18.68595 -17.69288 -17.16814 -16.52494 -16.34280 -16.20452 -15.91582 -15.50263 -15.15770 -14.90081 -14.50707 -14.46878 -14.26874 -14.17307 -13.92008 -13.58815 -13.42472 -13.18849 -13.06916 -12.98659 -12.62267 -12.49500 -12.20367 -11.98077 -11.85672 -11.83790 -11.78837 -11.62604 -11.32745 -10.72064 -10.64722 -10.10836 -9.25413 -8.23613 -6.30903 -0.26393 0.38412 1.45969 1.47175 1.49453 1.59051 1.81884 1.92765 2.13800 2.43163 2.81724 3.07057 3.12240 3.15950 3.70638 3.86139 3.97634 4.08798 4.18081 4.22710 4.32940 4.35363 4.39605 4.47502 4.54667 4.66652 4.71691 4.86332 5.00920 5.05837 5.10385 5.17299 5.18432 5.29084 5.35644 5.39241 5.43528 5.61334 5.69359 6.23682 6.36269 6.63120 6.70613 6.79275 7.33722 8.93316 Molecular weight = 287.13amu Principal moments of inertia in cm(-1) A = 0.026364 B = 0.002888 C = 0.002666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1061.799539 B = 9694.170514 C =10499.835366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.167 4.167 3 C 0.399 3.601 4 O -0.504 6.504 5 C -0.233 4.233 6 C -0.015 4.015 7 C -0.224 4.224 8 C 0.157 3.843 9 O -0.327 6.327 10 C 0.066 3.934 11 C 0.025 3.975 12 H 0.125 0.875 13 C 0.249 3.751 14 N -0.506 5.506 15 C 0.001 3.999 16 C -0.535 4.535 17 H 0.027 0.973 18 C 0.001 3.999 19 N -0.955 5.955 20 Si 0.951 3.049 21 H -0.255 1.255 22 H -0.300 1.300 23 H -0.228 1.228 24 C -0.184 4.184 25 C -0.032 4.032 26 H 0.045 0.955 27 H 0.082 0.918 28 H 0.044 0.956 29 H 0.123 0.877 30 H 0.125 0.875 31 H 0.174 0.826 32 H 0.164 0.836 33 H 0.087 0.913 34 H 0.125 0.875 35 H 0.038 0.962 36 H 0.075 0.925 37 H 0.265 0.735 38 H 0.133 0.867 39 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.724 -7.872 -2.754 27.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.203 4.203 3 C 0.281 3.719 4 O -0.383 6.383 5 C -0.235 4.235 6 C -0.033 4.033 7 C -0.243 4.243 8 C 0.110 3.890 9 O -0.240 6.240 10 C -0.009 4.009 11 C 0.004 3.996 12 H 0.142 0.858 13 C -0.068 4.068 14 N -0.183 5.183 15 C -0.038 4.038 16 C -0.573 4.573 17 H 0.045 0.955 18 C -0.196 4.196 19 N -0.596 5.596 20 Si 0.773 3.227 21 H -0.180 1.180 22 H -0.226 1.226 23 H -0.151 1.151 24 C -0.202 4.202 25 C -0.051 4.051 26 H 0.065 0.935 27 H 0.101 0.899 28 H 0.063 0.937 29 H 0.141 0.859 30 H 0.143 0.857 31 H 0.192 0.808 32 H 0.182 0.818 33 H 0.105 0.895 34 H 0.143 0.857 35 H 0.056 0.944 36 H 0.093 0.907 37 H 0.074 0.926 38 H 0.151 0.849 39 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -26.523 -6.429 -1.301 27.322 hybrid contribution 0.960 -0.143 -0.215 0.994 sum -25.563 -6.573 -1.516 26.438 Atomic orbital electron populations 1.21613 0.94348 1.02693 1.01676 1.22076 0.97753 0.93610 1.06908 1.22919 0.87415 0.92384 0.69230 1.90510 1.59239 1.49347 1.39253 1.20586 0.95561 0.94407 1.12900 1.21477 0.91271 0.99965 0.90609 1.21536 0.98136 0.95443 1.09155 1.19629 0.82730 0.94647 0.91983 1.86051 1.14170 1.36476 1.87329 1.23158 0.85112 0.87055 1.05617 1.19098 0.94265 0.98050 0.88230 0.85781 1.29662 0.90631 0.91984 0.94507 1.81131 1.11170 1.11966 1.14024 1.19575 0.91560 0.92690 0.99970 1.21345 0.92019 0.93544 1.50404 0.95496 1.26101 0.94389 1.05191 0.93918 1.70096 1.00881 1.36801 1.51787 0.85658 0.79053 0.77804 0.80155 1.17974 1.22641 1.15088 1.20409 0.92059 0.98984 1.08775 1.21132 0.94347 0.97119 0.92465 0.93547 0.89871 0.93671 0.85888 0.85684 0.80848 0.81820 0.89450 0.85709 0.94404 0.90671 0.92646 0.84910 0.84978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.61 9.20 71.98 0.66 -0.95 16 2 C -0.17 -1.46 5.02 29.85 0.15 -1.31 16 3 C 0.40 6.94 7.11 27.94 0.20 7.14 16 4 O -0.50 -12.71 15.97 -3.08 -0.05 -12.76 16 5 C -0.23 -4.07 5.87 -20.15 -0.12 -4.19 16 6 C -0.02 -0.19 9.44 22.44 0.21 0.02 16 7 C -0.22 -3.39 8.99 22.21 0.20 -3.19 16 8 C 0.16 3.35 6.70 22.67 0.15 3.50 16 9 O -0.33 -8.03 9.86 -89.76 -0.88 -8.92 16 10 C 0.07 1.38 4.09 71.98 0.29 1.68 16 11 C 0.03 0.77 2.45 -12.60 -0.03 0.74 16 12 H 0.12 3.73 8.14 -2.39 -0.02 3.71 16 13 C 0.25 9.74 13.72 89.42 1.23 10.96 16 14 N -0.51 -22.50 18.55 20.03 0.37 -22.13 16 15 C 0.00 0.02 3.49 29.85 0.10 0.12 16 16 C -0.54 -27.50 9.15 25.60 0.23 -27.26 16 17 H 0.03 1.59 7.84 -2.91 -0.02 1.57 16 18 C 0.00 0.04 5.47 84.66 0.46 0.50 16 19 N -0.96 -57.70 13.96 21.45 0.30 -57.40 16 20 Si 0.95 38.66 27.47 68.60 1.88 40.55 16 21 H -0.26 -9.60 7.11 99.48 0.71 -8.90 16 22 H -0.30 -12.79 7.11 99.48 0.71 -12.08 16 23 H -0.23 -7.91 6.54 99.48 0.65 -7.26 16 24 C -0.18 -4.02 9.95 22.21 0.22 -3.80 16 25 C -0.03 -0.67 9.57 22.44 0.21 -0.46 16 26 H 0.05 0.63 8.10 -2.39 -0.02 0.61 16 27 H 0.08 0.54 8.14 -2.39 -0.02 0.52 16 28 H 0.04 0.63 8.10 -2.39 -0.02 0.61 16 29 H 0.12 0.53 8.08 -2.39 -0.02 0.51 16 30 H 0.13 0.50 8.09 -2.39 -0.02 0.48 16 31 H 0.17 0.71 7.04 -2.91 -0.02 0.69 16 32 H 0.16 1.63 6.27 -2.91 -0.02 1.61 16 33 H 0.09 1.60 7.65 -2.39 -0.02 1.58 16 34 H 0.13 1.71 7.65 -2.39 -0.02 1.70 16 35 H 0.04 1.33 7.20 -2.39 -0.02 1.31 16 36 H 0.08 2.24 7.57 -2.39 -0.02 2.23 16 37 H 0.26 14.99 8.31 -92.71 -0.77 14.22 16 38 H 0.13 2.85 8.06 -2.91 -0.02 2.83 16 39 H 0.13 2.75 7.64 -2.91 -0.02 2.73 16 Total: -1.00 -75.31 340.63 6.80 -68.51 By element: Atomic # 1 Polarization: 7.66 SS G_CDS: 1.00 Total: 8.66 kcal Atomic # 6 Polarization: -20.70 SS G_CDS: 4.18 Total: -16.52 kcal Atomic # 7 Polarization: -80.20 SS G_CDS: 0.67 Total: -79.52 kcal Atomic # 8 Polarization: -20.74 SS G_CDS: -0.93 Total: -21.67 kcal Atomic # 14 Polarization: 38.66 SS G_CDS: 1.88 Total: 40.55 kcal Total: -75.31 6.80 -68.51 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000119251942.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.418 kcal (2) G-P(sol) polarization free energy of solvation -75.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.803 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.506 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds