Wall clock time and date at job start Tue Mar 31 2020 06:04:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46801 * 2 1 4 4 C 1.50699 * 109.46866 * 119.99935 * 2 1 3 5 5 C 1.38237 * 120.00096 * 79.72561 * 4 2 1 6 6 C 1.38241 * 120.00003 * 179.78619 * 5 4 2 7 7 C 1.38233 * 119.99857 * 0.44500 * 6 5 4 8 8 C 1.50696 * 119.99872 * 179.83427 * 7 6 5 9 9 F 1.39904 * 109.47286 * 269.97549 * 8 7 6 10 10 F 1.39897 * 109.47184 * 29.97343 * 8 7 6 11 11 F 1.39902 * 109.47388 * 149.97718 * 8 7 6 12 12 C 1.38239 * 120.00072 * 359.80937 * 7 6 5 13 13 C 1.38230 * 120.00068 * 359.97438 * 12 7 6 14 14 N 1.46898 * 109.47006 * 239.99936 * 2 1 3 15 15 C 1.46906 * 110.99628 * 183.95648 * 14 2 1 16 16 C 1.46898 * 111.00015 * 60.00191 * 14 2 1 17 17 C 1.50706 * 109.46712 * 189.99781 * 16 14 2 18 18 H 1.07996 * 120.00491 * 0.02562 * 17 16 14 19 19 C 1.37882 * 119.99509 * 179.97438 * 17 16 14 20 20 N 1.31518 * 120.00044 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 119.99591 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.47047 * 60.00529 * 21 19 17 23 23 H 1.48503 * 109.46780 * 180.02562 * 21 19 17 24 24 H 1.48494 * 109.47259 * 300.00141 * 21 19 17 25 25 H 1.09001 * 109.47002 * 59.99846 * 1 2 3 26 26 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47050 * 300.00112 * 1 2 3 28 28 H 1.08002 * 119.99812 * 359.97438 * 5 4 2 29 29 H 1.07995 * 120.00128 * 180.27419 * 6 5 4 30 30 H 1.08003 * 119.99789 * 180.02562 * 12 7 6 31 31 H 1.08005 * 120.00360 * 180.02562 * 13 12 7 32 32 H 1.09000 * 109.46760 * 60.00056 * 15 14 2 33 33 H 1.09001 * 109.46820 * 179.97438 * 15 14 2 34 34 H 1.08998 * 109.47231 * 299.99619 * 15 14 2 35 35 H 1.08997 * 109.47383 * 309.99674 * 16 14 2 36 36 H 1.09004 * 109.47083 * 70.00126 * 16 14 2 37 37 H 0.97003 * 119.99710 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 6 2.0614 -2.0920 1.2675 6 6 2.5263 -2.7436 2.3946 7 6 2.9535 -2.0137 3.4881 8 6 3.4567 -2.7241 4.7181 9 9 2.3883 -2.9616 5.5895 10 9 4.0367 -3.9423 4.3486 11 9 4.4124 -1.9278 5.3584 12 6 2.9195 -0.6322 3.4530 13 6 2.4588 0.0194 2.3243 14 7 2.0197 -0.6925 -1.1994 15 6 3.4851 -0.7946 -1.1869 16 6 1.5487 -0.0264 -2.4210 17 6 1.8581 -0.8912 -3.6158 18 1 2.3545 -1.8408 -3.4812 19 6 1.5064 -0.4705 -4.8809 20 7 0.9014 0.6857 -5.0449 21 14 1.8905 -1.5421 -6.3620 22 1 1.2058 -2.8518 -6.2162 23 1 1.4142 -0.8688 -7.5969 24 1 3.3571 -1.7573 -6.4502 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.7237 -2.6622 0.4147 29 1 2.5531 -3.8228 2.4219 30 1 3.2536 -0.0620 4.3072 31 1 2.4326 1.0988 2.2967 32 1 3.8029 -1.3532 -0.3066 33 1 3.8210 -1.3117 -2.0858 34 1 3.9188 0.2051 -1.1591 35 1 0.4723 0.1324 -2.3564 36 1 2.0520 0.9346 -2.5280 37 1 0.6543 0.9819 -5.9350 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000123235837.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:55 Heat of formation + Delta-G solvation = -124.343313 kcal Electronic energy + Delta-G solvation = -22621.214870 eV Core-core repulsion = 18755.433196 eV Total energy + Delta-G solvation = -3865.781675 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 287.119 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -50.25137 -47.77091 -47.71526 -39.77069 -36.96760 -33.17949 -31.91305 -31.06903 -29.91804 -27.47700 -25.82355 -24.50600 -23.03540 -22.90803 -21.31261 -19.46387 -18.59036 -18.48321 -18.41991 -16.63477 -15.67882 -15.40627 -14.79845 -14.70219 -14.55771 -14.51635 -14.19205 -14.13748 -13.96685 -13.90484 -13.88228 -13.44043 -13.18471 -13.02681 -12.56972 -12.10995 -11.84160 -11.72906 -11.39693 -11.17720 -11.07740 -10.90038 -10.86212 -10.62806 -10.31247 -9.79971 -9.30280 -9.04077 -8.85347 -8.45733 -7.36174 -6.07065 -4.08193 0.93628 1.30222 2.59005 3.30848 3.35230 3.37803 3.50459 3.65649 3.95476 4.34981 4.37850 4.66729 4.82286 4.90507 4.95428 5.28930 5.37493 5.42593 5.60740 5.68680 5.77207 5.94399 5.97941 6.11454 6.19062 6.21735 6.26784 6.40184 6.58655 6.65957 6.73141 6.83092 7.23745 7.27560 7.74087 8.01876 8.11807 8.47308 8.98691 9.55931 11.03778 Molecular weight = 287.12amu Principal moments of inertia in cm(-1) A = 0.031879 B = 0.003435 C = 0.003273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 878.120240 B = 8149.018016 C = 8552.080565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.110 3.890 3 H 0.042 0.958 4 C -0.029 4.029 5 C -0.092 4.092 6 C -0.076 4.076 7 C -0.197 4.197 8 C 0.509 3.491 9 F -0.180 7.180 10 F -0.179 7.179 11 F -0.181 7.181 12 C -0.074 4.074 13 C -0.123 4.123 14 N -0.532 5.532 15 C 0.034 3.966 16 C 0.189 3.811 17 C -0.508 4.508 18 H 0.063 0.937 19 C 0.056 3.944 20 N -0.899 5.899 21 Si 0.898 3.102 22 H -0.276 1.276 23 H -0.288 1.288 24 H -0.277 1.277 25 H 0.072 0.928 26 H 0.063 0.937 27 H 0.049 0.951 28 H 0.147 0.853 29 H 0.132 0.868 30 H 0.130 0.870 31 H 0.130 0.870 32 H 0.047 0.953 33 H 0.076 0.924 34 H 0.010 0.990 35 H 0.039 0.961 36 H -0.010 1.010 37 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.120 -3.458 18.111 18.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.001 3.999 3 H 0.060 0.940 4 C -0.029 4.029 5 C -0.110 4.110 6 C -0.094 4.094 7 C -0.198 4.198 8 C 0.455 3.545 9 F -0.161 7.161 10 F -0.160 7.160 11 F -0.162 7.162 12 C -0.093 4.093 13 C -0.142 4.142 14 N -0.257 5.257 15 C -0.115 4.115 16 C 0.064 3.936 17 C -0.547 4.547 18 H 0.081 0.919 19 C -0.145 4.145 20 N -0.538 5.538 21 Si 0.726 3.274 22 H -0.201 1.201 23 H -0.214 1.214 24 H -0.203 1.203 25 H 0.091 0.909 26 H 0.082 0.918 27 H 0.068 0.932 28 H 0.165 0.835 29 H 0.150 0.850 30 H 0.148 0.852 31 H 0.148 0.852 32 H 0.066 0.934 33 H 0.095 0.905 34 H 0.029 0.971 35 H 0.057 0.943 36 H 0.008 0.992 37 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 2.858 -3.827 17.990 18.613 hybrid contribution 0.677 0.250 -0.642 0.966 sum 3.536 -3.576 17.348 18.063 Atomic orbital electron populations 1.21862 0.93302 1.02779 1.01735 1.20626 0.95992 0.94678 0.88601 0.94002 1.20325 0.93523 0.94226 0.94866 1.21209 0.97900 0.94288 0.97565 1.20970 0.96260 1.00209 0.91993 1.19872 1.10212 0.95195 0.94514 1.18378 0.75253 0.76907 0.83931 1.93213 1.56300 1.94638 1.71989 1.93181 1.85031 1.46358 1.91462 1.93173 1.65464 1.73813 1.83747 1.20795 0.97488 0.92260 0.98719 1.21050 1.00041 1.00308 0.92764 1.62236 1.09394 1.52008 1.02031 1.22275 0.88590 0.98983 1.01642 1.19835 0.96238 0.92569 0.84917 1.21105 1.38340 1.04827 0.90407 0.91907 1.24974 0.95297 0.95212 0.99040 1.69942 1.40967 1.20047 1.22872 0.86565 0.78670 0.80502 0.81700 1.20145 1.21369 1.20305 0.90886 0.91799 0.93161 0.83496 0.85025 0.85193 0.85184 0.93433 0.90526 0.97097 0.94298 0.99185 0.92843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.18 8.96 37.16 0.33 -1.85 16 2 C 0.11 1.82 2.28 -68.86 -0.16 1.66 16 3 H 0.04 0.71 8.00 -51.93 -0.42 0.29 16 4 C -0.03 -0.41 3.77 -104.62 -0.39 -0.80 16 5 C -0.09 -1.26 8.08 -39.58 -0.32 -1.58 16 6 C -0.08 -0.93 9.40 -39.58 -0.37 -1.30 16 7 C -0.20 -2.36 5.45 -104.63 -0.57 -2.93 16 8 C 0.51 5.87 3.36 36.00 0.12 5.99 16 9 F -0.18 -2.12 17.30 2.25 0.04 -2.08 16 10 F -0.18 -2.11 16.46 2.25 0.04 -2.08 16 11 F -0.18 -2.07 16.46 2.25 0.04 -2.03 16 12 C -0.07 -0.85 9.40 -39.58 -0.37 -1.22 16 13 C -0.12 -1.50 9.67 -39.58 -0.38 -1.89 16 14 N -0.53 -10.61 3.97 -237.72 -0.94 -11.55 16 15 C 0.03 0.63 8.95 60.07 0.54 1.17 16 16 C 0.19 4.65 4.54 -4.97 -0.02 4.63 16 17 C -0.51 -13.72 8.46 -34.44 -0.29 -14.01 16 18 H 0.06 1.68 7.12 -52.49 -0.37 1.30 16 19 C 0.06 1.55 5.46 -17.82 -0.10 1.45 16 20 N -0.90 -25.99 13.29 55.43 0.74 -25.25 16 21 Si 0.90 21.15 29.54 -169.99 -5.02 16.13 16 22 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 23 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 24 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 25 H 0.07 1.28 6.20 -51.93 -0.32 0.96 16 26 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 27 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.15 2.14 7.73 -52.49 -0.41 1.73 16 29 H 0.13 1.40 7.60 -52.49 -0.40 1.00 16 30 H 0.13 1.22 7.60 -52.48 -0.40 0.82 16 31 H 0.13 1.37 8.04 -52.48 -0.42 0.94 16 32 H 0.05 0.78 6.12 -51.93 -0.32 0.47 16 33 H 0.08 1.55 6.76 -51.93 -0.35 1.20 16 34 H 0.01 0.20 8.14 -51.93 -0.42 -0.22 16 35 H 0.04 1.00 5.83 -51.93 -0.30 0.70 16 36 H -0.01 -0.26 8.12 -51.93 -0.42 -0.68 16 37 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 LS Contribution 317.99 15.07 4.79 4.79 Total: -1.00 -28.12 317.99 -6.84 -34.97 By element: Atomic # 1 Polarization: 2.32 SS G_CDS: -4.53 Total: -2.22 kcal Atomic # 6 Polarization: -8.70 SS G_CDS: -1.99 Total: -10.68 kcal Atomic # 7 Polarization: -36.60 SS G_CDS: -0.21 Total: -36.80 kcal Atomic # 9 Polarization: -6.30 SS G_CDS: 0.11 Total: -6.19 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -28.12 -6.84 -34.97 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000123235837.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.375 kcal (2) G-P(sol) polarization free energy of solvation -28.125 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.968 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds