Wall clock time and date at job start Tue Mar 31 2020 06:04:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46801 * 2 1 4 4 C 1.50699 * 109.46866 * 119.99935 * 2 1 3 5 5 C 1.38237 * 120.00096 * 79.72561 * 4 2 1 6 6 C 1.38241 * 120.00003 * 179.78619 * 5 4 2 7 7 C 1.38233 * 119.99857 * 0.44500 * 6 5 4 8 8 C 1.50696 * 119.99872 * 179.83427 * 7 6 5 9 9 F 1.39904 * 109.47286 * 269.97549 * 8 7 6 10 10 F 1.39897 * 109.47184 * 29.97343 * 8 7 6 11 11 F 1.39902 * 109.47388 * 149.97718 * 8 7 6 12 12 C 1.38239 * 120.00072 * 359.80937 * 7 6 5 13 13 C 1.38230 * 120.00068 * 359.97438 * 12 7 6 14 14 N 1.46898 * 109.47006 * 239.99936 * 2 1 3 15 15 C 1.46906 * 110.99628 * 183.95648 * 14 2 1 16 16 C 1.46898 * 111.00015 * 60.00191 * 14 2 1 17 17 C 1.50706 * 109.46712 * 189.99781 * 16 14 2 18 18 H 1.07996 * 120.00491 * 0.02562 * 17 16 14 19 19 C 1.37882 * 119.99509 * 179.97438 * 17 16 14 20 20 N 1.31518 * 120.00044 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 119.99591 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.47047 * 60.00529 * 21 19 17 23 23 H 1.48503 * 109.46780 * 180.02562 * 21 19 17 24 24 H 1.48494 * 109.47259 * 300.00141 * 21 19 17 25 25 H 1.09001 * 109.47002 * 59.99846 * 1 2 3 26 26 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47050 * 300.00112 * 1 2 3 28 28 H 1.08002 * 119.99812 * 359.97438 * 5 4 2 29 29 H 1.07995 * 120.00128 * 180.27419 * 6 5 4 30 30 H 1.08003 * 119.99789 * 180.02562 * 12 7 6 31 31 H 1.08005 * 120.00360 * 180.02562 * 13 12 7 32 32 H 1.09000 * 109.46760 * 60.00056 * 15 14 2 33 33 H 1.09001 * 109.46820 * 179.97438 * 15 14 2 34 34 H 1.08998 * 109.47231 * 299.99619 * 15 14 2 35 35 H 1.08997 * 109.47383 * 309.99674 * 16 14 2 36 36 H 1.09004 * 109.47083 * 70.00126 * 16 14 2 37 37 H 0.97003 * 119.99710 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 6 2.0614 -2.0920 1.2675 6 6 2.5263 -2.7436 2.3946 7 6 2.9535 -2.0137 3.4881 8 6 3.4567 -2.7241 4.7181 9 9 2.3883 -2.9616 5.5895 10 9 4.0367 -3.9423 4.3486 11 9 4.4124 -1.9278 5.3584 12 6 2.9195 -0.6322 3.4530 13 6 2.4588 0.0194 2.3243 14 7 2.0197 -0.6925 -1.1994 15 6 3.4851 -0.7946 -1.1869 16 6 1.5487 -0.0264 -2.4210 17 6 1.8581 -0.8912 -3.6158 18 1 2.3545 -1.8408 -3.4812 19 6 1.5064 -0.4705 -4.8809 20 7 0.9014 0.6857 -5.0449 21 14 1.8905 -1.5421 -6.3620 22 1 1.2058 -2.8518 -6.2162 23 1 1.4142 -0.8688 -7.5969 24 1 3.3571 -1.7573 -6.4502 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.7237 -2.6622 0.4147 29 1 2.5531 -3.8228 2.4219 30 1 3.2536 -0.0620 4.3072 31 1 2.4326 1.0988 2.2967 32 1 3.8029 -1.3532 -0.3066 33 1 3.8210 -1.3117 -2.0858 34 1 3.9188 0.2051 -1.1591 35 1 0.4723 0.1324 -2.3564 36 1 2.0520 0.9346 -2.5280 37 1 0.6543 0.9819 -5.9350 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000123235837.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:55 Heat of formation + Delta-G solvation = -138.803631 kcal Electronic energy + Delta-G solvation = -22621.841917 eV Core-core repulsion = 18755.433196 eV Total energy + Delta-G solvation = -3866.408721 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 287.119 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -51.15786 -48.67466 -48.62401 -40.86590 -38.40079 -34.98880 -33.42444 -32.04707 -31.16411 -29.32066 -26.98603 -26.15103 -24.42522 -23.93348 -22.66796 -20.84852 -19.49746 -19.41369 -19.34041 -18.58837 -17.02253 -16.74545 -16.45681 -15.75275 -15.67567 -15.53054 -15.44490 -15.25411 -15.08294 -14.86680 -14.78869 -14.73316 -14.47355 -14.22651 -13.89198 -13.75440 -13.31999 -13.08771 -12.81160 -12.78058 -12.52594 -12.43902 -12.28890 -12.15601 -11.97770 -11.49052 -11.27647 -10.56335 -10.00939 -9.92004 -9.03667 -8.18234 -6.26952 -0.06578 0.34249 1.42945 1.45069 1.52865 1.67168 2.41079 2.50803 2.73531 3.04560 3.14683 3.25767 3.44291 3.70391 3.90634 3.95452 4.28350 4.33476 4.43718 4.50009 4.51766 4.70035 4.72394 4.87818 4.94685 5.01218 5.11396 5.16255 5.21133 5.27736 5.32392 5.37926 5.58676 5.70202 5.81829 6.09095 6.33101 6.63861 6.88749 7.42163 8.92482 Molecular weight = 287.12amu Principal moments of inertia in cm(-1) A = 0.031879 B = 0.003435 C = 0.003273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 878.120240 B = 8149.018016 C = 8552.080565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.110 3.890 3 H 0.039 0.961 4 C -0.041 4.041 5 C -0.101 4.101 6 C -0.074 4.074 7 C -0.198 4.198 8 C 0.515 3.485 9 F -0.181 7.181 10 F -0.180 7.180 11 F -0.179 7.179 12 C -0.068 4.068 13 C -0.119 4.119 14 N -0.534 5.534 15 C 0.040 3.960 16 C 0.204 3.796 17 C -0.522 4.522 18 H 0.063 0.937 19 C 0.004 3.996 20 N -0.934 5.934 21 Si 0.965 3.035 22 H -0.268 1.268 23 H -0.285 1.285 24 H -0.269 1.269 25 H 0.046 0.954 26 H 0.060 0.940 27 H 0.079 0.921 28 H 0.134 0.866 29 H 0.146 0.854 30 H 0.154 0.846 31 H 0.148 0.852 32 H 0.073 0.927 33 H 0.058 0.942 34 H 0.007 0.993 35 H 0.022 0.978 36 H -0.042 1.042 37 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.840 -4.246 19.544 20.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.002 3.998 3 H 0.057 0.943 4 C -0.042 4.042 5 C -0.119 4.119 6 C -0.092 4.092 7 C -0.199 4.199 8 C 0.461 3.539 9 F -0.162 7.162 10 F -0.162 7.162 11 F -0.160 7.160 12 C -0.086 4.086 13 C -0.138 4.138 14 N -0.259 5.259 15 C -0.108 4.108 16 C 0.078 3.922 17 C -0.561 4.561 18 H 0.081 0.919 19 C -0.194 4.194 20 N -0.574 5.574 21 Si 0.790 3.210 22 H -0.193 1.193 23 H -0.210 1.210 24 H -0.195 1.195 25 H 0.065 0.935 26 H 0.079 0.921 27 H 0.097 0.903 28 H 0.152 0.848 29 H 0.164 0.836 30 H 0.172 0.828 31 H 0.166 0.834 32 H 0.092 0.908 33 H 0.076 0.924 34 H 0.026 0.974 35 H 0.040 0.960 36 H -0.024 1.024 37 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 3.587 -4.627 19.447 20.309 hybrid contribution 0.463 0.502 -0.970 1.186 sum 4.049 -4.125 18.477 19.360 Atomic orbital electron populations 1.21806 0.92926 1.02597 1.01806 1.20652 0.96417 0.94548 0.88219 0.94323 1.20092 0.95264 0.94381 0.94432 1.21099 0.98808 0.94118 0.97874 1.21072 0.95630 1.01027 0.91471 1.20015 1.09760 0.95637 0.94497 1.18254 0.75188 0.76785 0.83696 1.93216 1.56368 1.94637 1.71987 1.93182 1.85053 1.46477 1.91472 1.93180 1.65381 1.73739 1.83685 1.21057 0.96371 0.92161 0.99045 1.21207 0.99181 1.01208 0.92155 1.62123 1.10177 1.51869 1.01688 1.22212 0.87768 0.98899 1.01917 1.19481 0.94909 0.91088 0.86725 1.21454 1.38054 1.05014 0.91551 0.91921 1.25840 0.95073 0.96444 1.02070 1.70069 1.42075 1.21738 1.23560 0.85506 0.78779 0.78807 0.77950 1.19344 1.21049 1.19456 0.93531 0.92072 0.90255 0.84829 0.83600 0.82790 0.83409 0.90834 0.92359 0.97428 0.95967 1.02385 0.92775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.20 8.96 71.98 0.65 -3.56 16 2 C 0.11 3.62 2.28 44.17 0.10 3.72 16 3 H 0.04 1.30 8.00 -2.39 -0.02 1.28 16 4 C -0.04 -1.10 3.77 -19.86 -0.07 -1.18 16 5 C -0.10 -2.63 8.08 22.27 0.18 -2.45 16 6 C -0.07 -1.65 9.40 22.27 0.21 -1.44 16 7 C -0.20 -4.19 5.45 -19.87 -0.11 -4.30 16 8 C 0.51 10.48 3.36 71.23 0.24 10.72 16 9 F -0.18 -3.80 17.30 44.97 0.78 -3.02 16 10 F -0.18 -3.83 16.46 44.97 0.74 -3.09 16 11 F -0.18 -3.58 16.46 44.97 0.74 -2.84 16 12 C -0.07 -1.34 9.40 22.27 0.21 -1.13 16 13 C -0.12 -2.59 9.67 22.27 0.22 -2.38 16 14 N -0.53 -21.63 3.97 -906.01 -3.60 -25.23 16 15 C 0.04 1.51 8.95 127.69 1.14 2.66 16 16 C 0.20 10.41 4.54 85.56 0.39 10.80 16 17 C -0.52 -28.78 8.46 25.60 0.22 -28.57 16 18 H 0.06 3.38 7.12 -2.91 -0.02 3.36 16 19 C 0.00 0.21 5.46 84.66 0.46 0.67 16 20 N -0.93 -55.18 13.29 21.45 0.28 -54.90 16 21 Si 0.96 43.57 29.54 68.60 2.03 45.60 16 22 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 23 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 24 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 25 H 0.05 1.69 6.20 -2.39 -0.01 1.67 16 26 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 27 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 28 H 0.13 3.83 7.73 -2.91 -0.02 3.81 16 29 H 0.15 2.78 7.60 -2.91 -0.02 2.75 16 30 H 0.15 2.28 7.60 -2.91 -0.02 2.25 16 31 H 0.15 2.66 8.04 -2.91 -0.02 2.63 16 32 H 0.07 2.36 6.12 -2.39 -0.01 2.34 16 33 H 0.06 2.37 6.76 -2.39 -0.02 2.36 16 34 H 0.01 0.27 8.14 -2.39 -0.02 0.25 16 35 H 0.02 1.21 5.83 -2.39 -0.01 1.19 16 36 H -0.04 -2.34 8.12 -2.38 -0.02 -2.36 16 37 H 0.26 14.73 8.31 -92.71 -0.77 13.96 16 Total: -1.00 -60.42 317.99 5.88 -54.54 By element: Atomic # 1 Polarization: 4.30 SS G_CDS: 1.08 Total: 5.39 kcal Atomic # 6 Polarization: -20.26 SS G_CDS: 3.83 Total: -16.43 kcal Atomic # 7 Polarization: -76.81 SS G_CDS: -3.31 Total: -80.13 kcal Atomic # 9 Polarization: -11.22 SS G_CDS: 2.26 Total: -8.96 kcal Atomic # 14 Polarization: 43.57 SS G_CDS: 2.03 Total: 45.60 kcal Total: -60.42 5.88 -54.54 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000123235837.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.268 kcal (2) G-P(sol) polarization free energy of solvation -60.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.536 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.804 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds