Wall clock time and date at job start Tue Mar 31 2020 05:51:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50700 * 109.47700 * 2 1 4 4 O 1.21307 * 119.99224 * 359.97438 * 3 2 1 5 5 C 1.46774 * 120.00425 * 179.97438 * 3 2 1 6 6 C 1.40026 * 120.22415 * 0.27356 * 5 3 2 7 7 C 1.37668 * 119.87962 * 180.29263 * 6 5 3 8 8 C 1.38636 * 120.34235 * 359.68429 * 7 6 5 9 9 C 1.38050 * 120.45168 * 0.02562 * 8 7 6 10 10 C 1.38689 * 120.11153 * 0.03314 * 9 8 7 11 11 O 1.35596 * 120.17182 * 179.97438 * 10 9 8 12 12 C 1.42911 * 116.99640 * 359.97438 * 11 10 9 13 13 C 1.53002 * 109.46796 * 180.02562 * 12 11 10 14 14 H 1.08996 * 109.47407 * 304.99603 * 13 12 11 15 15 C 1.47206 * 109.47021 * 65.00015 * 13 12 11 16 16 N 6.60455 * 86.69594 * 19.76296 * 2 1 3 17 17 C 1.52997 * 109.46817 * 184.99822 * 13 12 11 18 18 C 1.50698 * 109.46933 * 175.00167 * 17 13 12 19 19 H 1.08003 * 120.00121 * 0.02562 * 18 17 13 20 20 C 1.37882 * 119.99840 * 179.97438 * 18 17 13 21 21 N 1.31513 * 119.99940 * 179.97438 * 20 18 17 22 22 Si 1.86797 * 119.99921 * 0.02562 * 20 18 17 23 23 H 1.48499 * 109.47570 * 89.99954 * 22 20 18 24 24 H 1.48509 * 109.46793 * 209.99830 * 22 20 18 25 25 H 1.48499 * 109.47276 * 329.99570 * 22 20 18 26 26 H 1.09003 * 109.47206 * 59.99893 * 1 2 3 27 27 H 1.08994 * 109.47728 * 180.02562 * 1 2 3 28 28 H 1.09007 * 109.46842 * 300.00304 * 1 2 3 29 29 H 1.08996 * 109.47411 * 239.99196 * 2 1 3 30 30 H 1.09009 * 109.46813 * 119.99898 * 2 1 3 31 31 H 1.08001 * 120.05620 * 359.97438 * 6 5 3 32 32 H 1.08002 * 119.83113 * 179.70429 * 7 6 5 33 33 H 1.07996 * 119.77475 * 180.02562 * 8 7 6 34 34 H 1.07998 * 119.94223 * 179.97438 * 9 8 7 35 35 H 1.08997 * 109.47202 * 60.00418 * 12 11 10 36 36 H 1.08997 * 109.46780 * 299.99982 * 12 11 10 37 37 H 1.08998 * 109.47192 * 294.99969 * 17 13 12 38 38 H 1.09000 * 109.47325 * 55.00085 * 17 13 12 39 39 H 0.97004 * 120.00087 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 8 1.2441 2.3428 -0.0005 5 6 3.4755 1.6889 0.0006 6 6 4.3895 0.6282 -0.0047 7 6 5.7415 0.8878 0.0020 8 6 6.2036 2.1948 0.0073 9 6 5.3148 3.2512 0.0065 10 6 3.9489 3.0112 0.0010 11 8 3.0748 4.0478 0.0007 12 6 3.6301 5.3646 0.0068 13 6 2.4991 6.3950 0.0061 14 1 1.8365 6.2067 -0.8386 15 6 1.7370 6.2879 1.2610 16 7 1.1493 6.2052 2.2295 17 6 3.0903 7.8011 -0.1131 18 6 1.9745 8.8063 -0.2372 19 1 0.9464 8.4755 -0.2313 20 6 2.2661 10.1486 -0.3574 21 7 1.2923 11.0258 -0.4663 22 14 4.0442 10.7209 -0.3670 23 1 4.5505 10.7402 -1.7629 24 1 4.1274 12.0873 0.2087 25 1 4.8681 9.7904 0.4456 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5139 0.8901 31 1 4.0345 -0.3918 -0.0087 32 1 6.4458 0.0690 0.0028 33 1 7.2661 2.3880 0.0121 34 1 5.6839 4.2662 0.0110 35 1 4.2481 5.5024 -0.8804 36 1 4.2413 5.4970 0.8995 37 1 3.6820 8.0230 0.7750 38 1 3.7269 7.8539 -0.9963 39 1 1.4974 11.9701 -0.5512 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000153319175.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:49 Heat of formation + Delta-G solvation = -35.441474 kcal Electronic energy + Delta-G solvation = -21760.310307 eV Core-core repulsion = 18440.240446 eV Total energy + Delta-G solvation = -3320.069861 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 287.131 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.63659 -38.88997 -37.69500 -36.18594 -33.84417 -33.06760 -32.13784 -31.39250 -30.10665 -27.77772 -25.51567 -24.44352 -22.86795 -21.90550 -21.49740 -19.68833 -18.22868 -17.24917 -17.02040 -16.61631 -16.10728 -15.63109 -15.15666 -14.96479 -14.89598 -14.38685 -14.15849 -13.62370 -13.40902 -13.24263 -12.88236 -12.47637 -12.44159 -12.39990 -12.20103 -12.09082 -11.79495 -11.58600 -11.43634 -11.33722 -11.29213 -10.94515 -10.76402 -10.47638 -10.14227 -9.87808 -9.54492 -9.39710 -9.25600 -8.65969 -8.37390 -6.14150 -4.15870 0.57111 1.22295 2.41750 3.08222 3.22306 3.30416 3.31703 3.60356 3.61928 3.69166 3.91123 4.33929 4.54115 4.60601 4.65420 4.83973 4.90680 4.95646 4.98984 5.13457 5.17743 5.19594 5.28973 5.31412 5.49243 5.57841 5.63689 5.71475 5.79246 5.96613 6.04283 6.08856 6.10934 6.19037 6.20601 6.50470 6.79396 7.00810 7.31000 7.56637 7.66869 8.35801 8.43845 8.89658 9.44174 10.98810 Molecular weight = 287.13amu Principal moments of inertia in cm(-1) A = 0.019362 B = 0.004024 C = 0.003466 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1445.761576 B = 6956.520526 C = 8077.210990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.166 4.166 3 C 0.385 3.615 4 O -0.425 6.425 5 C -0.211 4.211 6 C -0.038 4.038 7 C -0.180 4.180 8 C -0.047 4.047 9 C -0.225 4.225 10 C 0.193 3.807 11 O -0.281 6.281 12 C 0.056 3.944 13 C 0.024 3.976 14 H 0.119 0.881 15 C 0.242 3.758 16 N -0.458 5.458 17 C -0.001 4.001 18 C -0.530 4.530 19 H 0.077 0.923 20 C 0.073 3.927 21 N -0.894 5.894 22 Si 0.877 3.123 23 H -0.274 1.274 24 H -0.286 1.286 25 H -0.264 1.264 26 H 0.061 0.939 27 H 0.058 0.942 28 H 0.060 0.940 29 H 0.095 0.905 30 H 0.094 0.906 31 H 0.135 0.865 32 H 0.127 0.873 33 H 0.128 0.872 34 H 0.138 0.862 35 H 0.084 0.916 36 H 0.070 0.930 37 H 0.028 0.972 38 H 0.037 0.963 39 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.227 -23.807 -2.130 26.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.204 4.204 3 C 0.260 3.740 4 O -0.298 6.298 5 C -0.213 4.213 6 C -0.056 4.056 7 C -0.198 4.198 8 C -0.066 4.066 9 C -0.244 4.244 10 C 0.144 3.856 11 O -0.192 6.192 12 C -0.020 4.020 13 C 0.002 3.998 14 H 0.137 0.863 15 C -0.076 4.076 16 N -0.134 5.134 17 C -0.040 4.040 18 C -0.568 4.568 19 H 0.095 0.905 20 C -0.130 4.130 21 N -0.531 5.531 22 Si 0.704 3.296 23 H -0.199 1.199 24 H -0.212 1.212 25 H -0.189 1.189 26 H 0.080 0.920 27 H 0.077 0.923 28 H 0.080 0.920 29 H 0.113 0.887 30 H 0.112 0.888 31 H 0.153 0.847 32 H 0.145 0.855 33 H 0.146 0.854 34 H 0.155 0.845 35 H 0.102 0.898 36 H 0.088 0.912 37 H 0.046 0.954 38 H 0.055 0.945 39 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 9.623 -23.207 -0.682 25.133 hybrid contribution 1.493 0.604 -0.406 1.661 sum 11.117 -22.604 -1.088 25.213 Atomic orbital electron populations 1.21590 0.93682 1.01512 1.03392 1.21953 0.98361 0.95997 1.04071 1.22198 0.87504 0.91207 0.73046 1.90648 1.57741 1.47275 1.34174 1.20001 0.95942 0.90925 1.14385 1.21240 0.92619 0.97909 0.93877 1.20972 0.95465 0.96887 1.06456 1.21179 0.99651 0.92228 0.93513 1.21387 0.91958 1.01050 1.10022 1.19346 0.88708 0.87744 0.89766 1.86340 1.33468 1.13648 1.85704 1.23216 0.96966 0.79128 1.02662 1.18971 0.94134 0.96456 0.90206 0.86284 1.28660 0.93374 0.91352 0.94166 1.81000 1.09581 1.10348 1.12497 1.19630 0.97781 0.88558 0.98023 1.20960 0.93542 0.90551 1.51715 0.90535 1.24973 0.97203 0.96600 0.94201 1.69900 1.31836 1.02156 1.49253 0.86826 0.85539 0.78470 0.78777 1.19923 1.21180 1.18893 0.91985 0.92267 0.92049 0.88723 0.88801 0.84738 0.85503 0.85394 0.84457 0.89752 0.91206 0.95393 0.94522 0.92447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.38 9.20 37.16 0.34 -1.04 16 2 C -0.17 -1.44 5.03 -27.89 -0.14 -1.58 16 3 C 0.38 5.06 7.11 -30.86 -0.22 4.84 16 4 O -0.43 -7.53 14.79 -16.37 -0.24 -7.77 16 5 C -0.21 -2.58 5.88 -104.95 -0.62 -3.20 16 6 C -0.04 -0.33 9.46 -39.12 -0.37 -0.70 16 7 C -0.18 -1.41 10.02 -39.64 -0.40 -1.81 16 8 C -0.05 -0.41 10.03 -39.50 -0.40 -0.81 16 9 C -0.23 -2.47 9.03 -39.48 -0.36 -2.83 16 10 C 0.19 2.65 6.71 -38.58 -0.26 2.39 16 11 O -0.28 -4.58 7.95 -40.39 -0.32 -4.90 16 12 C 0.06 0.83 4.09 37.16 0.15 0.98 16 13 C 0.02 0.45 2.45 -93.40 -0.23 0.22 16 14 H 0.12 2.20 8.14 -51.93 -0.42 1.77 16 15 C 0.24 5.34 13.71 -20.76 -0.28 5.05 16 16 N -0.46 -11.01 18.54 42.15 0.78 -10.23 16 17 C 0.00 -0.03 3.49 -27.89 -0.10 -0.13 16 18 C -0.53 -14.33 9.15 -34.44 -0.32 -14.64 16 19 H 0.08 2.29 7.84 -52.48 -0.41 1.88 16 20 C 0.07 2.04 5.47 -17.82 -0.10 1.94 16 21 N -0.89 -26.95 13.96 55.43 0.77 -26.17 16 22 Si 0.88 20.32 27.47 -169.99 -4.67 15.65 16 23 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 24 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 25 H -0.26 -5.74 6.54 56.52 0.37 -5.37 16 26 H 0.06 0.66 8.10 -51.93 -0.42 0.24 16 27 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.06 0.68 8.10 -51.93 -0.42 0.26 16 29 H 0.09 0.60 8.08 -51.93 -0.42 0.18 16 30 H 0.09 0.62 8.09 -51.92 -0.42 0.20 16 31 H 0.13 0.73 7.05 -52.49 -0.37 0.36 16 32 H 0.13 0.66 8.06 -52.49 -0.42 0.24 16 33 H 0.13 0.78 8.06 -52.49 -0.42 0.35 16 34 H 0.14 1.32 6.30 -52.49 -0.33 0.99 16 35 H 0.08 1.01 7.66 -51.93 -0.40 0.61 16 36 H 0.07 0.95 7.66 -51.93 -0.40 0.55 16 37 H 0.03 0.59 7.20 -51.93 -0.37 0.22 16 38 H 0.04 0.70 7.57 -51.93 -0.39 0.31 16 39 H 0.27 7.47 8.31 -40.82 -0.34 7.14 16 LS Contribution 338.64 15.07 5.10 5.10 Total: -1.00 -34.66 338.64 -7.07 -41.74 By element: Atomic # 1 Polarization: 3.11 SS G_CDS: -5.21 Total: -2.11 kcal Atomic # 6 Polarization: -8.02 SS G_CDS: -3.28 Total: -11.31 kcal Atomic # 7 Polarization: -37.96 SS G_CDS: 1.55 Total: -36.41 kcal Atomic # 8 Polarization: -12.11 SS G_CDS: -0.56 Total: -12.67 kcal Atomic # 14 Polarization: 20.32 SS G_CDS: -4.67 Total: 15.65 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -34.66 -7.07 -41.74 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153319175.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.294 kcal (2) G-P(sol) polarization free energy of solvation -34.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.736 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.441 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds