Wall clock time and date at job start Tue Mar 31 2020 05:51:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50700 * 109.47700 * 2 1 4 4 O 1.21307 * 119.99224 * 359.97438 * 3 2 1 5 5 C 1.46774 * 120.00425 * 179.97438 * 3 2 1 6 6 C 1.40026 * 120.22415 * 0.27356 * 5 3 2 7 7 C 1.37668 * 119.87962 * 180.29263 * 6 5 3 8 8 C 1.38636 * 120.34235 * 359.68429 * 7 6 5 9 9 C 1.38050 * 120.45168 * 0.02562 * 8 7 6 10 10 C 1.38689 * 120.11153 * 0.03314 * 9 8 7 11 11 O 1.35596 * 120.17182 * 179.97438 * 10 9 8 12 12 C 1.42911 * 116.99640 * 359.97438 * 11 10 9 13 13 C 1.53002 * 109.46796 * 180.02562 * 12 11 10 14 14 H 1.08996 * 109.47407 * 304.99603 * 13 12 11 15 15 C 1.47206 * 109.47021 * 65.00015 * 13 12 11 16 16 N 6.60455 * 86.69594 * 19.76296 * 2 1 3 17 17 C 1.52997 * 109.46817 * 184.99822 * 13 12 11 18 18 C 1.50698 * 109.46933 * 175.00167 * 17 13 12 19 19 H 1.08003 * 120.00121 * 0.02562 * 18 17 13 20 20 C 1.37882 * 119.99840 * 179.97438 * 18 17 13 21 21 N 1.31513 * 119.99940 * 179.97438 * 20 18 17 22 22 Si 1.86797 * 119.99921 * 0.02562 * 20 18 17 23 23 H 1.48499 * 109.47570 * 89.99954 * 22 20 18 24 24 H 1.48509 * 109.46793 * 209.99830 * 22 20 18 25 25 H 1.48499 * 109.47276 * 329.99570 * 22 20 18 26 26 H 1.09003 * 109.47206 * 59.99893 * 1 2 3 27 27 H 1.08994 * 109.47728 * 180.02562 * 1 2 3 28 28 H 1.09007 * 109.46842 * 300.00304 * 1 2 3 29 29 H 1.08996 * 109.47411 * 239.99196 * 2 1 3 30 30 H 1.09009 * 109.46813 * 119.99898 * 2 1 3 31 31 H 1.08001 * 120.05620 * 359.97438 * 6 5 3 32 32 H 1.08002 * 119.83113 * 179.70429 * 7 6 5 33 33 H 1.07996 * 119.77475 * 180.02562 * 8 7 6 34 34 H 1.07998 * 119.94223 * 179.97438 * 9 8 7 35 35 H 1.08997 * 109.47202 * 60.00418 * 12 11 10 36 36 H 1.08997 * 109.46780 * 299.99982 * 12 11 10 37 37 H 1.08998 * 109.47192 * 294.99969 * 17 13 12 38 38 H 1.09000 * 109.47325 * 55.00085 * 17 13 12 39 39 H 0.97004 * 120.00087 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 8 1.2441 2.3428 -0.0005 5 6 3.4755 1.6889 0.0006 6 6 4.3895 0.6282 -0.0047 7 6 5.7415 0.8878 0.0020 8 6 6.2036 2.1948 0.0073 9 6 5.3148 3.2512 0.0065 10 6 3.9489 3.0112 0.0010 11 8 3.0748 4.0478 0.0007 12 6 3.6301 5.3646 0.0068 13 6 2.4991 6.3950 0.0061 14 1 1.8365 6.2067 -0.8386 15 6 1.7370 6.2879 1.2610 16 7 1.1493 6.2052 2.2295 17 6 3.0903 7.8011 -0.1131 18 6 1.9745 8.8063 -0.2372 19 1 0.9464 8.4755 -0.2313 20 6 2.2661 10.1486 -0.3574 21 7 1.2923 11.0258 -0.4663 22 14 4.0442 10.7209 -0.3670 23 1 4.5505 10.7402 -1.7629 24 1 4.1274 12.0873 0.2087 25 1 4.8681 9.7904 0.4456 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5139 0.8901 31 1 4.0345 -0.3918 -0.0087 32 1 6.4458 0.0690 0.0028 33 1 7.2661 2.3880 0.0121 34 1 5.6839 4.2662 0.0110 35 1 4.2481 5.5024 -0.8804 36 1 4.2413 5.4970 0.8995 37 1 3.6820 8.0230 0.7750 38 1 3.7269 7.8539 -0.9963 39 1 1.4974 11.9701 -0.5512 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000153319175.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:49 Heat of formation + Delta-G solvation = -56.295982 kcal Electronic energy + Delta-G solvation = -21761.214626 eV Core-core repulsion = 18440.240446 eV Total energy + Delta-G solvation = -3320.974181 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 287.131 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.53112 -39.94960 -38.70565 -37.70049 -35.67605 -34.02674 -33.86907 -32.16128 -30.98113 -29.37673 -26.37699 -25.72403 -23.82122 -23.32686 -22.64369 -20.53527 -19.23205 -18.88227 -18.72945 -17.48187 -17.15455 -16.62962 -16.35241 -16.10209 -15.77470 -15.62443 -15.27053 -15.15127 -14.67522 -14.45138 -14.23907 -14.07534 -13.86392 -13.46667 -13.22834 -13.10910 -13.03265 -12.79725 -12.67803 -12.40917 -12.25040 -12.05287 -12.02384 -11.89561 -11.86948 -11.68222 -11.39582 -10.75872 -10.47943 -9.97581 -9.19715 -8.27297 -6.35129 -0.20695 0.49463 1.41959 1.45588 1.55784 1.57706 1.78796 1.90230 2.16891 2.39583 2.87770 3.02334 3.11574 3.12688 3.72578 3.93257 4.02036 4.09053 4.14297 4.26200 4.28001 4.34077 4.39039 4.46557 4.52735 4.62596 4.66118 4.86678 4.96181 5.04179 5.05333 5.10049 5.27899 5.32007 5.34043 5.41407 5.54487 5.56768 5.85180 6.20634 6.40849 6.65654 6.73952 6.77421 7.29133 8.89971 Molecular weight = 287.13amu Principal moments of inertia in cm(-1) A = 0.019362 B = 0.004024 C = 0.003466 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1445.761576 B = 6956.520526 C = 8077.210990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.159 4.159 3 C 0.377 3.623 4 O -0.491 6.491 5 C -0.239 4.239 6 C -0.029 4.029 7 C -0.172 4.172 8 C -0.043 4.043 9 C -0.236 4.236 10 C 0.155 3.845 11 O -0.314 6.314 12 C 0.065 3.935 13 C 0.026 3.974 14 H 0.115 0.885 15 C 0.251 3.749 16 N -0.505 5.505 17 C 0.004 3.996 18 C -0.539 4.539 19 H 0.024 0.976 20 C 0.003 3.997 21 N -0.954 5.954 22 Si 0.953 3.047 23 H -0.254 1.254 24 H -0.294 1.294 25 H -0.232 1.232 26 H 0.041 0.959 27 H 0.088 0.912 28 H 0.035 0.965 29 H 0.128 0.872 30 H 0.123 0.877 31 H 0.171 0.829 32 H 0.164 0.836 33 H 0.159 0.841 34 H 0.148 0.852 35 H 0.119 0.881 36 H 0.083 0.917 37 H 0.038 0.962 38 H 0.073 0.927 39 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.054 -26.826 -2.753 31.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.196 4.196 3 C 0.258 3.742 4 O -0.369 6.369 5 C -0.241 4.241 6 C -0.047 4.047 7 C -0.190 4.190 8 C -0.061 4.061 9 C -0.254 4.254 10 C 0.108 3.892 11 O -0.227 6.227 12 C -0.011 4.011 13 C 0.004 3.996 14 H 0.133 0.867 15 C -0.066 4.066 16 N -0.182 5.182 17 C -0.034 4.034 18 C -0.577 4.577 19 H 0.042 0.958 20 C -0.194 4.194 21 N -0.594 5.594 22 Si 0.775 3.225 23 H -0.178 1.178 24 H -0.221 1.221 25 H -0.155 1.155 26 H 0.060 0.940 27 H 0.107 0.893 28 H 0.054 0.946 29 H 0.146 0.854 30 H 0.141 0.859 31 H 0.188 0.812 32 H 0.181 0.819 33 H 0.177 0.823 34 H 0.166 0.834 35 H 0.137 0.863 36 H 0.101 0.899 37 H 0.056 0.944 38 H 0.091 0.909 39 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 14.476 -26.292 -1.308 30.042 hybrid contribution -0.052 1.397 -0.221 1.415 sum 14.425 -24.895 -1.530 28.813 Atomic orbital electron populations 1.21603 0.94902 1.02620 1.01202 1.22031 0.97279 0.93473 1.06830 1.23066 0.87965 0.92522 0.70695 1.90628 1.59230 1.49405 1.37646 1.20289 0.96103 0.91655 1.16024 1.21661 0.92536 0.98466 0.91991 1.21477 0.95695 0.97700 1.04134 1.21635 1.00886 0.92015 0.91590 1.21597 0.90998 1.02534 1.10311 1.19787 0.89708 0.87566 0.92147 1.86274 1.35164 1.14364 1.86887 1.23090 0.94860 0.78191 1.04928 1.19056 0.95196 0.97118 0.88208 0.86750 1.29495 0.92641 0.89955 0.94482 1.80971 1.10988 1.11981 1.14252 1.19552 0.96150 0.87924 0.99819 1.21313 0.93165 0.92288 1.50889 0.95803 1.26099 1.02967 0.96619 0.93672 1.70098 1.35104 1.02633 1.51555 0.85623 0.78853 0.77790 0.80213 1.17815 1.22080 1.15462 0.93970 0.89303 0.94606 0.85412 0.85926 0.81194 0.81880 0.82317 0.83446 0.86332 0.89932 0.94406 0.90853 0.92482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.77 9.20 71.98 0.66 -2.11 16 2 C -0.16 -2.45 5.03 29.85 0.15 -2.30 16 3 C 0.38 9.97 7.11 27.92 0.20 10.17 16 4 O -0.49 -18.67 14.79 17.84 0.26 -18.40 16 5 C -0.24 -5.54 5.88 -20.07 -0.12 -5.65 16 6 C -0.03 -0.38 9.46 22.57 0.21 -0.17 16 7 C -0.17 -1.83 10.02 22.23 0.22 -1.60 16 8 C -0.04 -0.56 10.03 22.32 0.22 -0.33 16 9 C -0.24 -4.52 9.03 22.33 0.20 -4.32 16 10 C 0.16 4.12 6.71 22.92 0.15 4.27 16 11 O -0.31 -10.41 7.95 -68.11 -0.54 -10.95 16 12 C 0.06 1.84 4.09 71.98 0.29 2.14 16 13 C 0.03 0.98 2.45 -12.60 -0.03 0.95 16 14 H 0.11 4.42 8.14 -2.39 -0.02 4.40 16 15 C 0.25 11.55 13.71 89.45 1.23 12.78 16 16 N -0.50 -25.58 18.54 20.01 0.37 -25.21 16 17 C 0.00 0.16 3.49 29.85 0.10 0.27 16 18 C -0.54 -29.97 9.15 25.60 0.23 -29.74 16 19 H 0.02 1.52 7.84 -2.91 -0.02 1.50 16 20 C 0.00 0.18 5.47 84.66 0.46 0.65 16 21 N -0.95 -59.90 13.96 21.45 0.30 -59.60 16 22 Si 0.95 41.02 27.47 68.60 1.88 42.91 16 23 H -0.25 -10.09 7.11 99.48 0.71 -9.38 16 24 H -0.29 -13.01 7.11 99.48 0.71 -12.30 16 25 H -0.23 -8.71 6.54 99.48 0.65 -8.06 16 26 H 0.04 0.94 8.10 -2.39 -0.02 0.92 16 27 H 0.09 1.11 8.14 -2.39 -0.02 1.10 16 28 H 0.03 0.84 8.10 -2.38 -0.02 0.82 16 29 H 0.13 1.14 8.08 -2.39 -0.02 1.12 16 30 H 0.12 1.21 8.09 -2.38 -0.02 1.19 16 31 H 0.17 0.91 7.05 -2.91 -0.02 0.89 16 32 H 0.16 0.60 8.06 -2.91 -0.02 0.57 16 33 H 0.16 1.03 8.06 -2.91 -0.02 1.01 16 34 H 0.15 2.37 6.30 -2.91 -0.02 2.35 16 35 H 0.12 2.49 7.66 -2.39 -0.02 2.47 16 36 H 0.08 2.09 7.66 -2.39 -0.02 2.07 16 37 H 0.04 1.51 7.20 -2.39 -0.02 1.49 16 38 H 0.07 2.56 7.57 -2.39 -0.02 2.54 16 39 H 0.27 15.58 8.31 -92.71 -0.77 14.81 16 Total: -1.00 -84.23 338.64 7.47 -76.76 By element: Atomic # 1 Polarization: 8.50 SS G_CDS: 1.00 Total: 9.50 kcal Atomic # 6 Polarization: -19.20 SS G_CDS: 4.20 Total: -15.00 kcal Atomic # 7 Polarization: -85.48 SS G_CDS: 0.67 Total: -84.81 kcal Atomic # 8 Polarization: -29.08 SS G_CDS: -0.28 Total: -29.36 kcal Atomic # 14 Polarization: 41.02 SS G_CDS: 1.88 Total: 42.91 kcal Total: -84.23 7.47 -76.76 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153319175.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.462 kcal (2) G-P(sol) polarization free energy of solvation -84.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.758 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds