Wall clock time and date at job start Tue Mar 31 2020 05:51:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50703 * 119.99572 * 2 1 4 4 O 1.42902 * 109.47213 * 134.99960 * 3 2 1 5 5 C 1.35982 * 117.00081 * 179.97438 * 4 3 2 6 6 C 1.38697 * 120.00231 * 180.02562 * 5 4 3 7 7 C 1.38125 * 120.00233 * 180.02562 * 6 5 4 8 8 C 1.38698 * 120.00100 * 359.97438 * 7 6 5 9 9 O 1.35979 * 120.00213 * 179.97438 * 8 7 6 10 10 C 1.42905 * 117.00260 * 180.02562 * 9 8 7 11 11 C 1.52997 * 109.47264 * 180.02562 * 10 9 8 12 12 H 1.08998 * 109.47192 * 54.99822 * 11 10 9 13 13 C 1.47209 * 109.46866 * 294.99890 * 11 10 9 14 14 N 9.39508 * 146.79568 * 220.72912 * 3 1 2 15 15 C 1.53001 * 109.47242 * 175.00315 * 11 10 9 16 16 C 1.50699 * 109.47005 * 184.99914 * 15 11 10 17 17 H 1.07991 * 120.00133 * 0.02562 * 16 15 11 18 18 C 1.37880 * 119.99671 * 179.97438 * 16 15 11 19 19 N 1.31521 * 120.00123 * 0.02562 * 18 16 15 20 20 Si 1.86795 * 119.99878 * 179.97438 * 18 16 15 21 21 H 1.48498 * 109.47492 * 0.02562 * 20 18 16 22 22 H 1.48505 * 109.47155 * 120.00717 * 20 18 16 23 23 H 1.48499 * 109.47223 * 240.00207 * 20 18 16 24 24 C 1.38697 * 119.99913 * 0.26548 * 8 7 6 25 25 C 1.38135 * 119.99788 * 359.48382 * 24 8 7 26 26 H 1.08005 * 119.99177 * 180.02562 * 1 2 3 27 27 H 1.07996 * 120.00267 * 0.02562 * 1 2 3 28 28 H 1.07999 * 120.00782 * 179.97438 * 2 1 3 29 29 H 1.09003 * 109.47429 * 14.99979 * 3 2 1 30 30 H 1.09003 * 109.47108 * 255.00327 * 3 2 1 31 31 H 1.08004 * 119.99469 * 359.97438 * 6 5 4 32 32 H 1.07999 * 120.00154 * 179.97438 * 7 6 5 33 33 H 1.09001 * 109.47103 * 300.00642 * 10 9 8 34 34 H 1.09004 * 109.47054 * 60.00146 * 10 9 8 35 35 H 1.09005 * 109.46584 * 305.00085 * 15 11 10 36 36 H 1.09000 * 109.47396 * 64.99207 * 15 11 10 37 37 H 0.96996 * 119.99988 * 180.02562 * 19 18 16 38 38 H 1.07999 * 120.00375 * 179.72029 * 24 8 7 39 39 H 1.08009 * 119.99784 * 180.23597 * 25 24 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 8 3.1267 1.2415 0.9527 5 6 3.9101 2.3458 1.0783 6 6 4.9603 2.3517 1.9841 7 6 5.7557 3.4737 2.1121 8 6 5.5045 4.5943 1.3343 9 8 6.2873 5.6990 1.4607 10 6 5.9709 6.8169 0.6286 11 6 6.9530 7.9559 0.9095 12 1 7.9738 7.5951 0.7831 13 6 6.7688 8.4333 2.2898 14 7 6.6228 8.8025 3.3570 15 6 6.6938 9.1053 -0.0665 16 6 7.7377 10.1747 0.1282 17 1 8.5090 10.0471 0.8731 18 6 7.7084 11.3155 -0.6456 19 7 6.7693 11.4707 -1.5532 20 14 9.0019 12.6413 -0.4039 21 1 9.9390 12.2286 0.6715 22 1 9.7551 12.8345 -1.6691 23 1 8.3401 13.9148 -0.0226 24 6 4.4512 4.5902 0.4320 25 6 3.6590 3.4663 0.3004 26 1 -0.5399 -0.9354 0.0004 27 1 -0.5400 0.9352 -0.0004 28 1 1.8501 -0.9352 0.0004 29 1 1.3854 2.1162 0.2660 30 1 2.4754 1.4869 -0.9927 31 1 5.1557 1.4793 2.5901 32 1 6.5733 3.4784 2.8178 33 1 6.0456 6.5232 -0.4185 34 1 4.9554 7.1517 0.8405 35 1 6.7428 8.7315 -1.0892 36 1 5.7050 9.5244 0.1201 37 1 6.7490 12.2730 -2.0978 38 1 4.2528 5.4643 -0.1704 39 1 2.8410 3.4618 -0.4050 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000155456046.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:51 Heat of formation + Delta-G solvation = -14.028801 kcal Electronic energy + Delta-G solvation = -20783.932394 eV Core-core repulsion = 17464.791056 eV Total energy + Delta-G solvation = -3319.141338 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 287.131 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.48693 -39.19269 -37.02977 -35.92940 -34.32161 -33.78894 -32.01029 -31.20114 -29.19960 -27.21655 -26.69809 -24.30725 -22.61450 -21.84832 -21.76444 -20.31320 -18.50271 -17.75403 -17.25463 -16.75218 -16.38025 -16.04204 -15.33629 -14.91092 -14.86948 -14.57654 -14.15458 -13.75079 -13.45511 -13.26764 -13.13824 -12.96051 -12.58198 -12.38987 -12.17444 -12.04805 -11.59912 -11.53157 -11.29112 -11.14769 -10.97429 -10.67697 -10.62139 -10.46019 -10.28284 -9.89698 -9.74712 -9.34387 -9.15535 -8.53257 -7.75654 -6.17454 -4.21007 1.17743 1.42493 1.65065 3.12306 3.24809 3.28822 3.33588 3.39274 3.59113 3.63189 3.67936 4.35857 4.41543 4.60139 4.65796 4.70334 4.73412 4.89462 5.02451 5.11722 5.21068 5.24365 5.33231 5.40686 5.42662 5.44781 5.71282 5.78444 5.94369 6.07930 6.16371 6.18213 6.21009 6.28447 6.33535 6.53099 7.20835 7.28597 7.38123 7.52387 7.77919 8.12374 8.38615 8.83369 9.45102 10.93520 Molecular weight = 287.13amu Principal moments of inertia in cm(-1) A = 0.029967 B = 0.002573 C = 0.002437 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 934.151089 B =10877.869620 C =11488.361785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.154 4.154 3 C 0.086 3.914 4 O -0.314 6.314 5 C 0.083 3.917 6 C -0.111 4.111 7 C -0.116 4.116 8 C 0.106 3.894 9 O -0.314 6.314 10 C 0.066 3.934 11 C 0.013 3.987 12 H 0.114 0.886 13 C 0.243 3.757 14 N -0.468 5.468 15 C 0.033 3.967 16 C -0.527 4.527 17 H 0.060 0.940 18 C 0.063 3.937 19 N -0.891 5.891 20 Si 0.894 3.106 21 H -0.272 1.272 22 H -0.282 1.282 23 H -0.283 1.283 24 C -0.170 4.170 25 C -0.167 4.167 26 H 0.107 0.893 27 H 0.100 0.900 28 H 0.119 0.881 29 H 0.066 0.934 30 H 0.071 0.929 31 H 0.135 0.865 32 H 0.138 0.862 33 H 0.082 0.918 34 H 0.067 0.933 35 H 0.042 0.958 36 H 0.029 0.971 37 H 0.263 0.737 38 H 0.136 0.864 39 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.329 -21.802 -0.311 23.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.172 4.172 3 C 0.011 3.989 4 O -0.229 6.229 5 C 0.039 3.961 6 C -0.130 4.130 7 C -0.134 4.134 8 C 0.060 3.940 9 O -0.228 6.228 10 C -0.010 4.010 11 C -0.009 4.009 12 H 0.132 0.868 13 C -0.074 4.074 14 N -0.145 5.145 15 C -0.005 4.005 16 C -0.565 4.565 17 H 0.078 0.922 18 C -0.140 4.140 19 N -0.529 5.529 20 Si 0.722 3.278 21 H -0.196 1.196 22 H -0.208 1.208 23 H -0.209 1.209 24 C -0.188 4.188 25 C -0.186 4.186 26 H 0.125 0.875 27 H 0.118 0.882 28 H 0.137 0.863 29 H 0.084 0.916 30 H 0.089 0.911 31 H 0.153 0.847 32 H 0.155 0.845 33 H 0.100 0.900 34 H 0.085 0.915 35 H 0.060 0.940 36 H 0.047 0.953 37 H 0.073 0.927 38 H 0.154 0.846 39 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -9.435 -21.254 1.393 23.296 hybrid contribution 0.415 0.956 -0.783 1.304 sum -9.020 -20.298 0.610 22.220 Atomic orbital electron populations 1.23894 0.95460 1.02585 0.99105 1.22680 0.95643 0.97847 1.01078 1.21789 0.88041 0.96663 0.92367 1.86063 1.42261 1.35804 1.58791 1.18820 0.93174 0.86520 0.97618 1.20180 0.94526 0.98927 0.99367 1.20270 1.01450 0.90815 1.00890 1.18947 0.91397 0.87830 0.95787 1.86136 1.53363 1.21656 1.61687 1.23056 0.99492 0.83901 0.94583 1.19296 1.00831 0.95227 0.85556 0.86841 1.29034 0.92387 0.91757 0.94196 1.81124 1.09538 1.10555 1.13237 1.19183 0.98602 0.89889 0.92803 1.21120 1.12508 1.02790 1.20116 0.92196 1.24957 0.95869 0.98239 0.94912 1.69941 1.32952 1.27928 1.22099 0.86487 0.81555 0.81630 0.78142 1.19602 1.20777 1.20919 1.21168 0.96803 0.99735 1.01144 1.21021 1.02189 0.93370 1.02003 0.87485 0.88195 0.86291 0.91569 0.91072 0.84724 0.84457 0.90003 0.91515 0.93957 0.95272 0.92726 0.84644 0.85402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.98 14.31 29.01 0.42 -0.57 16 2 C -0.15 -1.07 9.89 -36.02 -0.36 -1.43 16 3 C 0.09 0.70 5.15 36.01 0.19 0.88 16 4 O -0.31 -3.44 10.12 -19.68 -0.20 -3.64 16 5 C 0.08 0.97 6.69 -39.24 -0.26 0.71 16 6 C -0.11 -1.27 9.98 -39.45 -0.39 -1.66 16 7 C -0.12 -1.43 9.98 -39.45 -0.39 -1.82 16 8 C 0.11 1.46 6.69 -39.24 -0.26 1.20 16 9 O -0.31 -4.82 9.88 -19.67 -0.19 -5.02 16 10 C 0.07 0.98 4.09 37.16 0.15 1.13 16 11 C 0.01 0.23 2.45 -93.40 -0.23 0.00 16 12 H 0.11 1.93 8.14 -51.93 -0.42 1.51 16 13 C 0.24 5.07 13.72 -20.67 -0.28 4.78 16 14 N -0.47 -10.58 18.56 42.26 0.78 -9.80 16 15 C 0.03 0.74 4.42 -27.88 -0.12 0.62 16 16 C -0.53 -13.71 8.60 -34.44 -0.30 -14.01 16 17 H 0.06 1.56 7.59 -52.49 -0.40 1.16 16 18 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 19 N -0.89 -24.90 13.29 55.43 0.74 -24.17 16 20 Si 0.89 20.98 29.54 -169.99 -5.02 15.95 16 21 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 22 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 23 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 24 C -0.17 -2.09 9.03 -39.45 -0.36 -2.45 16 25 C -0.17 -1.86 9.03 -39.45 -0.36 -2.22 16 26 H 0.11 0.46 8.06 -52.48 -0.42 0.03 16 27 H 0.10 0.50 7.90 -52.49 -0.41 0.09 16 28 H 0.12 0.77 8.06 -52.49 -0.42 0.35 16 29 H 0.07 0.49 7.38 -51.93 -0.38 0.10 16 30 H 0.07 0.51 7.66 -51.93 -0.40 0.11 16 31 H 0.13 1.27 8.06 -52.48 -0.42 0.85 16 32 H 0.14 1.51 8.06 -52.49 -0.42 1.09 16 33 H 0.08 1.05 7.67 -51.93 -0.40 0.65 16 34 H 0.07 0.96 7.65 -51.93 -0.40 0.56 16 35 H 0.04 0.94 8.14 -51.93 -0.42 0.52 16 36 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 38 H 0.14 1.51 6.29 -52.49 -0.33 1.18 16 39 H 0.13 1.13 6.29 -52.48 -0.33 0.80 16 LS Contribution 345.59 15.07 5.21 5.21 Total: -1.00 -30.59 345.59 -6.49 -37.08 By element: Atomic # 1 Polarization: 2.76 SS G_CDS: -5.14 Total: -2.38 kcal Atomic # 6 Polarization: -10.58 SS G_CDS: -2.66 Total: -13.24 kcal Atomic # 7 Polarization: -35.48 SS G_CDS: 1.52 Total: -33.96 kcal Atomic # 8 Polarization: -8.26 SS G_CDS: -0.39 Total: -8.66 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.95 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -30.59 -6.49 -37.08 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000155456046.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.050 kcal (2) G-P(sol) polarization free energy of solvation -30.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.541 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.079 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds