Wall clock time and date at job start Tue Mar 31 2020 05:51:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50703 * 119.99572 * 2 1 4 4 O 1.42902 * 109.47213 * 134.99960 * 3 2 1 5 5 C 1.35982 * 117.00081 * 179.97438 * 4 3 2 6 6 C 1.38697 * 120.00231 * 180.02562 * 5 4 3 7 7 C 1.38125 * 120.00233 * 180.02562 * 6 5 4 8 8 C 1.38698 * 120.00100 * 359.97438 * 7 6 5 9 9 O 1.35979 * 120.00213 * 179.97438 * 8 7 6 10 10 C 1.42905 * 117.00260 * 180.02562 * 9 8 7 11 11 C 1.52997 * 109.47264 * 180.02562 * 10 9 8 12 12 H 1.08998 * 109.47192 * 54.99822 * 11 10 9 13 13 C 1.47209 * 109.46866 * 294.99890 * 11 10 9 14 14 N 9.39508 * 146.79568 * 220.72912 * 3 1 2 15 15 C 1.53001 * 109.47242 * 175.00315 * 11 10 9 16 16 C 1.50699 * 109.47005 * 184.99914 * 15 11 10 17 17 H 1.07991 * 120.00133 * 0.02562 * 16 15 11 18 18 C 1.37880 * 119.99671 * 179.97438 * 16 15 11 19 19 N 1.31521 * 120.00123 * 0.02562 * 18 16 15 20 20 Si 1.86795 * 119.99878 * 179.97438 * 18 16 15 21 21 H 1.48498 * 109.47492 * 0.02562 * 20 18 16 22 22 H 1.48505 * 109.47155 * 120.00717 * 20 18 16 23 23 H 1.48499 * 109.47223 * 240.00207 * 20 18 16 24 24 C 1.38697 * 119.99913 * 0.26548 * 8 7 6 25 25 C 1.38135 * 119.99788 * 359.48382 * 24 8 7 26 26 H 1.08005 * 119.99177 * 180.02562 * 1 2 3 27 27 H 1.07996 * 120.00267 * 0.02562 * 1 2 3 28 28 H 1.07999 * 120.00782 * 179.97438 * 2 1 3 29 29 H 1.09003 * 109.47429 * 14.99979 * 3 2 1 30 30 H 1.09003 * 109.47108 * 255.00327 * 3 2 1 31 31 H 1.08004 * 119.99469 * 359.97438 * 6 5 4 32 32 H 1.07999 * 120.00154 * 179.97438 * 7 6 5 33 33 H 1.09001 * 109.47103 * 300.00642 * 10 9 8 34 34 H 1.09004 * 109.47054 * 60.00146 * 10 9 8 35 35 H 1.09005 * 109.46584 * 305.00085 * 15 11 10 36 36 H 1.09000 * 109.47396 * 64.99207 * 15 11 10 37 37 H 0.96996 * 119.99988 * 180.02562 * 19 18 16 38 38 H 1.07999 * 120.00375 * 179.72029 * 24 8 7 39 39 H 1.08009 * 119.99784 * 180.23597 * 25 24 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 8 3.1267 1.2415 0.9527 5 6 3.9101 2.3458 1.0783 6 6 4.9603 2.3517 1.9841 7 6 5.7557 3.4737 2.1121 8 6 5.5045 4.5943 1.3343 9 8 6.2873 5.6990 1.4607 10 6 5.9709 6.8169 0.6286 11 6 6.9530 7.9559 0.9095 12 1 7.9738 7.5951 0.7831 13 6 6.7688 8.4333 2.2898 14 7 6.6228 8.8025 3.3570 15 6 6.6938 9.1053 -0.0665 16 6 7.7377 10.1747 0.1282 17 1 8.5090 10.0471 0.8731 18 6 7.7084 11.3155 -0.6456 19 7 6.7693 11.4707 -1.5532 20 14 9.0019 12.6413 -0.4039 21 1 9.9390 12.2286 0.6715 22 1 9.7551 12.8345 -1.6691 23 1 8.3401 13.9148 -0.0226 24 6 4.4512 4.5902 0.4320 25 6 3.6590 3.4663 0.3004 26 1 -0.5399 -0.9354 0.0004 27 1 -0.5400 0.9352 -0.0004 28 1 1.8501 -0.9352 0.0004 29 1 1.3854 2.1162 0.2660 30 1 2.4754 1.4869 -0.9927 31 1 5.1557 1.4793 2.5901 32 1 6.5733 3.4784 2.8178 33 1 6.0456 6.5232 -0.4185 34 1 4.9554 7.1517 0.8405 35 1 6.7428 8.7315 -1.0892 36 1 5.7050 9.5244 0.1201 37 1 6.7490 12.2730 -2.0978 38 1 4.2528 5.4643 -0.1704 39 1 2.8410 3.4618 -0.4050 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000155456046.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:51 Heat of formation + Delta-G solvation = -29.975169 kcal Electronic energy + Delta-G solvation = -20784.623880 eV Core-core repulsion = 17464.791056 eV Total energy + Delta-G solvation = -3319.832824 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 287.131 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.39941 -40.16347 -38.28423 -37.20203 -35.62073 -34.86726 -33.76714 -32.10099 -30.21486 -28.75722 -27.38602 -25.74393 -23.90730 -23.22988 -22.74859 -20.84545 -19.39272 -18.87988 -18.63004 -18.33513 -17.42782 -16.87232 -16.61025 -16.37459 -15.82576 -15.66835 -15.27130 -14.88526 -14.53978 -14.39189 -14.26992 -14.08423 -13.92662 -13.78103 -13.43980 -13.23030 -13.07860 -12.97148 -12.55554 -12.47594 -12.36579 -12.10630 -11.98325 -11.64135 -11.52138 -11.36460 -11.23509 -10.56774 -10.40604 -10.04016 -8.69257 -8.21710 -6.29388 0.29131 0.49411 1.16030 1.39437 1.43028 1.52990 1.84802 1.94310 2.23552 2.42459 2.48006 2.76732 3.10967 3.17085 3.73656 3.86875 3.93036 4.05247 4.11667 4.17230 4.20538 4.32803 4.44167 4.47574 4.52813 4.60068 4.68814 4.77399 4.92673 4.99732 5.10059 5.32131 5.37630 5.42889 5.55804 5.59480 5.63100 5.71942 5.76272 6.14744 6.35658 6.55064 6.71613 6.84513 7.39258 8.89408 Molecular weight = 287.13amu Principal moments of inertia in cm(-1) A = 0.029967 B = 0.002573 C = 0.002437 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 934.151089 B =10877.869620 C =11488.361785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.174 4.174 3 C 0.080 3.920 4 O -0.326 6.326 5 C 0.080 3.920 6 C -0.116 4.116 7 C -0.121 4.121 8 C 0.080 3.920 9 O -0.329 6.329 10 C 0.074 3.926 11 C 0.022 3.978 12 H 0.129 0.871 13 C 0.253 3.747 14 N -0.503 5.503 15 C 0.040 3.960 16 C -0.539 4.539 17 H 0.055 0.945 18 C 0.013 3.987 19 N -0.921 5.921 20 Si 0.949 3.051 21 H -0.270 1.270 22 H -0.273 1.273 23 H -0.285 1.285 24 C -0.174 4.174 25 C -0.168 4.168 26 H 0.121 0.879 27 H 0.107 0.893 28 H 0.120 0.880 29 H 0.073 0.927 30 H 0.080 0.920 31 H 0.151 0.849 32 H 0.145 0.855 33 H 0.106 0.894 34 H 0.070 0.930 35 H 0.046 0.954 36 H 0.009 0.991 37 H 0.265 0.735 38 H 0.146 0.854 39 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.777 -22.997 -0.795 25.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.192 4.192 3 C 0.005 3.995 4 O -0.241 6.241 5 C 0.035 3.965 6 C -0.134 4.134 7 C -0.140 4.140 8 C 0.035 3.965 9 O -0.244 6.244 10 C -0.002 4.002 11 C 0.000 4.000 12 H 0.147 0.853 13 C -0.063 4.063 14 N -0.181 5.181 15 C 0.002 3.998 16 C -0.578 4.578 17 H 0.073 0.927 18 C -0.186 4.186 19 N -0.561 5.561 20 Si 0.775 3.225 21 H -0.195 1.195 22 H -0.198 1.198 23 H -0.211 1.211 24 C -0.193 4.193 25 C -0.187 4.187 26 H 0.140 0.860 27 H 0.125 0.875 28 H 0.138 0.862 29 H 0.092 0.908 30 H 0.098 0.902 31 H 0.169 0.831 32 H 0.163 0.837 33 H 0.124 0.876 34 H 0.088 0.912 35 H 0.064 0.936 36 H 0.027 0.973 37 H 0.074 0.926 38 H 0.163 0.837 39 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -9.885 -22.467 0.909 24.563 hybrid contribution 0.465 1.220 -0.628 1.449 sum -9.420 -21.247 0.281 23.243 Atomic orbital electron populations 1.24115 0.95088 1.03660 0.97019 1.22699 0.96127 0.97428 1.02994 1.22013 0.87581 0.97660 0.92202 1.86059 1.42823 1.35559 1.59633 1.19012 0.93184 0.86883 0.97436 1.20402 0.94325 0.99179 0.99542 1.20441 1.01881 0.90774 1.00904 1.19173 0.92305 0.87710 0.97275 1.86068 1.54147 1.22099 1.62092 1.22891 0.98340 0.83115 0.95842 1.19219 1.02779 0.95043 0.82929 0.85289 1.29572 0.91303 0.90864 0.94600 1.81118 1.10883 1.11600 1.14459 1.18985 0.96448 0.90416 0.93966 1.21520 1.12993 1.03790 1.19452 0.92673 1.25680 0.97644 1.00324 0.94987 1.70020 1.34391 1.28640 1.23014 0.85632 0.79470 0.79092 0.78305 1.19492 1.19785 1.21141 1.21337 0.96509 1.00508 1.00926 1.21264 1.02493 0.92766 1.02170 0.86040 0.87511 0.86237 0.90837 0.90243 0.83093 0.83740 0.87606 0.91178 0.93618 0.97255 0.92610 0.83657 0.83200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.49 14.31 67.78 0.97 -0.52 16 2 C -0.17 -2.14 9.89 25.65 0.25 -1.89 16 3 C 0.08 1.15 5.15 71.24 0.37 1.52 16 4 O -0.33 -6.65 10.12 -93.35 -0.94 -7.59 16 5 C 0.08 1.73 6.69 22.49 0.15 1.88 16 6 C -0.12 -2.50 9.98 22.35 0.22 -2.27 16 7 C -0.12 -2.88 9.98 22.35 0.22 -2.66 16 8 C 0.08 2.12 6.69 22.49 0.15 2.27 16 9 O -0.33 -9.75 9.88 -93.31 -0.92 -10.67 16 10 C 0.07 2.10 4.09 71.98 0.29 2.39 16 11 C 0.02 0.77 2.45 -12.60 -0.03 0.74 16 12 H 0.13 4.20 8.14 -2.39 -0.02 4.18 16 13 C 0.25 10.44 13.72 89.41 1.23 11.67 16 14 N -0.50 -22.76 18.56 20.04 0.37 -22.39 16 15 C 0.04 1.77 4.42 29.85 0.13 1.90 16 16 C -0.54 -27.87 8.60 25.60 0.22 -27.65 16 17 H 0.06 2.84 7.59 -2.92 -0.02 2.82 16 18 C 0.01 0.69 5.46 84.65 0.46 1.15 16 19 N -0.92 -51.44 13.29 21.45 0.28 -51.15 16 20 Si 0.95 42.77 29.54 68.60 2.03 44.80 16 21 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 22 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 23 H -0.29 -12.87 7.11 99.48 0.71 -12.17 16 24 C -0.17 -4.02 9.03 22.36 0.20 -3.82 16 25 C -0.17 -3.45 9.03 22.36 0.20 -3.25 16 26 H 0.12 0.75 8.06 -2.91 -0.02 0.72 16 27 H 0.11 0.82 7.90 -2.91 -0.02 0.80 16 28 H 0.12 1.41 8.06 -2.91 -0.02 1.39 16 29 H 0.07 0.93 7.38 -2.39 -0.02 0.92 16 30 H 0.08 0.99 7.66 -2.39 -0.02 0.97 16 31 H 0.15 2.63 8.06 -2.91 -0.02 2.61 16 32 H 0.14 3.08 8.06 -2.91 -0.02 3.06 16 33 H 0.11 2.49 7.67 -2.39 -0.02 2.48 16 34 H 0.07 1.93 7.65 -2.38 -0.02 1.92 16 35 H 0.05 1.99 8.14 -2.38 -0.02 1.97 16 36 H 0.01 0.44 8.14 -2.39 -0.02 0.42 16 37 H 0.26 14.03 8.31 -92.71 -0.77 13.26 16 38 H 0.15 2.96 6.29 -2.91 -0.02 2.94 16 39 H 0.15 2.29 6.29 -2.91 -0.02 2.28 16 Total: -1.00 -64.27 345.59 6.91 -57.36 By element: Atomic # 1 Polarization: 7.13 SS G_CDS: 1.04 Total: 8.17 kcal Atomic # 6 Polarization: -23.58 SS G_CDS: 5.05 Total: -18.53 kcal Atomic # 7 Polarization: -74.19 SS G_CDS: 0.66 Total: -73.54 kcal Atomic # 8 Polarization: -16.40 SS G_CDS: -1.87 Total: -18.26 kcal Atomic # 14 Polarization: 42.77 SS G_CDS: 2.03 Total: 44.80 kcal Total: -64.27 6.91 -57.36 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000155456046.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.387 kcal (2) G-P(sol) polarization free energy of solvation -64.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.907 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.362 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.975 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds