Wall clock time and date at job start Tue Mar 31 2020 06:28:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42896 * 109.47151 * 2 1 4 4 C 1.42901 * 113.99796 * 180.02562 * 3 2 1 5 5 C 1.53007 * 109.46669 * 179.97438 * 4 3 2 6 6 C 1.53001 * 109.46635 * 185.12404 * 5 4 3 7 7 C 1.52999 * 115.54755 * 294.62022 * 6 5 4 8 8 N 1.46503 * 109.47175 * 279.24400 * 7 6 5 9 9 C 1.34773 * 119.99807 * 178.63506 * 8 7 6 10 10 O 1.21287 * 120.00496 * 359.72102 * 9 8 7 11 11 C 1.50705 * 120.00018 * 180.02562 * 9 8 7 12 12 S 1.80995 * 109.47391 * 179.72444 * 11 9 8 13 13 C 1.76197 * 100.00316 * 180.02562 * 12 11 9 14 14 H 1.08003 * 119.99906 * 359.97438 * 13 12 11 15 15 C 1.38795 * 120.00375 * 180.02562 * 13 12 11 16 16 N 1.31633 * 119.99756 * 359.97438 * 15 13 12 17 17 Si 1.86802 * 120.00133 * 179.97438 * 15 13 12 18 18 H 1.48508 * 109.46947 * 59.99841 * 17 15 13 19 19 H 1.48499 * 109.47129 * 179.97438 * 17 15 13 20 20 H 1.48495 * 109.46986 * 299.99541 * 17 15 13 21 21 C 1.52994 * 117.52256 * 80.32554 * 6 5 4 22 22 C 1.52997 * 60.00176 * 107.47977 * 21 6 5 23 23 H 1.08999 * 109.47177 * 299.99883 * 1 2 3 24 24 H 1.08996 * 109.47084 * 60.00714 * 1 2 3 25 25 H 1.09006 * 109.47120 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.47143 * 239.99357 * 2 1 3 27 27 H 1.09006 * 109.46939 * 119.99843 * 2 1 3 28 28 H 1.09000 * 109.47349 * 60.00239 * 4 3 2 29 29 H 1.08994 * 109.47144 * 299.99113 * 4 3 2 30 30 H 1.08993 * 109.47259 * 65.12019 * 5 4 3 31 31 H 1.08998 * 109.46967 * 305.11854 * 5 4 3 32 32 H 1.09001 * 109.46848 * 159.24551 * 7 6 5 33 33 H 1.08994 * 109.47472 * 39.24632 * 7 6 5 34 34 H 0.97000 * 120.00425 * 358.63162 * 8 7 6 35 35 H 1.09004 * 109.47055 * 299.72254 * 11 9 8 36 36 H 1.09003 * 109.47059 * 59.72412 * 11 9 8 37 37 H 0.97003 * 119.99523 * 180.02562 * 16 15 13 38 38 H 1.08999 * 117.50566 * 214.96921 * 21 6 5 39 39 H 1.09000 * 117.49701 * 359.97438 * 21 6 5 40 40 H 1.09000 * 117.49711 * 252.51255 * 22 21 6 41 41 H 1.08997 * 117.49912 * 107.49024 * 22 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.4309 1.4600 -0.0006 5 6 3.8254 2.9384 -0.0012 6 6 5.3450 3.0605 -0.1306 7 6 6.1537 2.5116 1.0464 8 7 6.1767 3.5009 2.1268 9 6 6.8119 3.2221 3.2823 10 8 7.3602 2.1504 3.4297 11 6 6.8351 4.2395 4.3938 12 16 7.7509 3.5711 5.8046 13 6 7.6230 4.9268 6.9227 14 1 7.0915 5.8202 6.6296 15 6 8.2060 4.8472 8.1797 16 7 8.8542 3.7585 8.5368 17 14 8.0709 6.2849 9.3648 18 1 6.6394 6.5585 9.6499 19 1 8.7722 5.9507 10.6304 20 1 8.6933 7.4880 8.7564 21 6 5.9489 2.9202 -1.5293 22 6 5.8957 4.2916 -0.8532 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5137 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 1.8934 -0.5139 -0.8899 27 1 1.8933 -0.5138 0.8901 28 1 3.8333 0.9766 -0.8908 29 1 3.8340 0.9765 0.8892 30 1 3.5017 3.4011 0.9310 31 1 3.3475 3.4415 -0.8417 32 1 7.1734 2.3047 0.7215 33 1 5.6932 1.5915 1.4061 34 1 5.7348 4.3565 2.0104 35 1 7.3216 5.1498 4.0432 36 1 5.8138 4.4678 4.6989 37 1 9.2613 3.7028 9.4155 38 1 6.9224 2.4368 -1.6111 39 1 5.2636 2.7403 -2.3576 40 1 5.1754 5.0142 -1.2367 41 1 6.8342 4.7104 -0.4900 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000158374495.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:28:28 Heat of formation + Delta-G solvation = -77.335808 kcal Electronic energy + Delta-G solvation = -19947.455821 eV Core-core repulsion = 16761.013236 eV Total energy + Delta-G solvation = -3186.442585 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 287.134 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.72583 -38.54327 -37.73145 -33.81705 -32.41500 -32.34501 -30.15827 -29.59303 -26.28268 -25.38857 -23.78593 -23.07226 -22.55565 -20.25661 -19.35854 -17.78748 -16.99170 -16.64123 -16.24683 -16.04051 -15.43157 -14.93594 -14.79060 -14.67626 -14.45083 -13.96573 -13.87681 -13.07913 -12.96105 -12.79494 -12.60069 -12.47413 -12.19939 -11.82062 -11.78100 -11.54176 -11.40099 -11.20714 -11.03238 -11.02737 -10.76778 -10.50861 -10.22191 -9.83137 -9.80802 -9.34185 -9.05047 -8.83974 -8.22440 -6.48544 -6.20272 -3.90777 2.95874 3.12585 3.21405 3.24555 3.29053 3.34343 3.53717 3.87606 4.21920 4.37213 4.40452 4.63783 4.65107 4.74838 4.87290 4.98835 5.06656 5.14726 5.14924 5.18333 5.23134 5.35919 5.36479 5.46639 5.57642 5.60636 5.61723 5.72833 5.80186 5.81093 5.84267 5.87629 5.92545 5.96725 6.16328 6.64207 6.95179 7.60592 7.75423 8.36396 8.64143 9.24889 10.87131 Molecular weight = 287.13amu Principal moments of inertia in cm(-1) A = 0.019230 B = 0.002902 C = 0.002694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1455.687162 B = 9644.543312 C =10392.643702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.057 3.943 3 O -0.392 6.392 4 C 0.063 3.937 5 C -0.078 4.078 6 C -0.142 4.142 7 C 0.158 3.842 8 N -0.735 5.735 9 C 0.531 3.469 10 O -0.520 6.520 11 C -0.153 4.153 12 S -0.061 6.061 13 C -0.536 4.536 14 H 0.072 0.928 15 C 0.073 3.927 16 N -0.868 5.868 17 Si 0.919 3.081 18 H -0.274 1.274 19 H -0.283 1.283 20 H -0.274 1.274 21 C -0.163 4.163 22 C -0.164 4.164 23 H 0.063 0.937 24 H 0.061 0.939 25 H 0.070 0.930 26 H 0.046 0.954 27 H 0.049 0.951 28 H 0.049 0.951 29 H 0.053 0.947 30 H 0.077 0.923 31 H 0.073 0.927 32 H 0.067 0.933 33 H 0.070 0.930 34 H 0.399 0.601 35 H 0.089 0.911 36 H 0.089 0.911 37 H 0.269 0.731 38 H 0.098 0.902 39 H 0.097 0.903 40 H 0.098 0.902 41 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.411 -2.330 -21.496 24.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.020 4.020 3 O -0.312 6.312 4 C -0.013 4.013 5 C -0.115 4.115 6 C -0.143 4.143 7 C 0.034 3.966 8 N -0.389 5.389 9 C 0.317 3.683 10 O -0.394 6.394 11 C -0.304 4.304 12 S 0.166 5.834 13 C -0.684 4.684 14 H 0.090 0.910 15 C -0.136 4.136 16 N -0.503 5.503 17 Si 0.745 3.255 18 H -0.199 1.199 19 H -0.208 1.208 20 H -0.199 1.199 21 C -0.201 4.201 22 C -0.202 4.202 23 H 0.082 0.918 24 H 0.080 0.920 25 H 0.089 0.911 26 H 0.065 0.935 27 H 0.068 0.932 28 H 0.068 0.932 29 H 0.071 0.929 30 H 0.096 0.904 31 H 0.092 0.908 32 H 0.085 0.915 33 H 0.089 0.911 34 H 0.233 0.767 35 H 0.107 0.893 36 H 0.108 0.892 37 H 0.079 0.921 38 H 0.117 0.883 39 H 0.116 0.884 40 H 0.116 0.884 41 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -11.505 -4.079 -21.100 24.377 hybrid contribution -0.739 2.297 0.520 2.469 sum -12.244 -1.782 -20.580 24.013 Atomic orbital electron populations 1.21745 0.93779 1.02233 1.03104 1.22452 0.95551 0.83803 1.00157 1.87848 1.21327 1.26507 1.95484 1.22479 0.80915 0.97380 1.00543 1.20965 0.91597 0.95362 1.03571 1.21603 0.94505 1.04391 0.93754 1.20755 0.99032 0.91771 0.85067 1.45981 1.57924 1.19832 1.15199 1.20315 0.77400 0.88220 0.82348 1.90701 1.43635 1.24697 1.80382 1.23528 1.05909 1.01033 0.99888 1.85383 1.68443 1.23851 1.05726 1.22830 1.41034 1.02743 1.01774 0.90981 1.24993 0.94515 0.96768 0.97320 1.70013 1.32978 1.26538 1.20815 0.86223 0.78463 0.81383 0.79423 1.19934 1.20820 1.19941 1.23058 1.02537 1.00309 0.94168 1.23049 1.03125 0.90919 1.03063 0.91759 0.91973 0.91124 0.93525 0.93241 0.93229 0.92896 0.90402 0.90790 0.91497 0.91147 0.76723 0.89255 0.89230 0.92143 0.88315 0.88418 0.88382 0.88157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.07 10.28 37.16 0.38 -0.69 16 2 C 0.06 0.48 6.66 37.16 0.25 0.73 16 3 O -0.39 -4.22 10.34 -35.23 -0.36 -4.58 16 4 C 0.06 0.60 5.70 37.16 0.21 0.81 16 5 C -0.08 -0.68 5.47 -26.73 -0.15 -0.83 16 6 C -0.14 -1.23 1.52 -154.51 -0.24 -1.46 16 7 C 0.16 1.86 5.54 -4.04 -0.02 1.84 16 8 N -0.73 -9.92 5.51 -60.29 -0.33 -10.26 16 9 C 0.53 10.01 7.85 -10.98 -0.09 9.92 16 10 O -0.52 -11.92 15.86 5.55 0.09 -11.83 16 11 C -0.15 -3.11 6.16 36.01 0.22 -2.89 16 12 S -0.06 -1.66 20.57 -107.50 -2.21 -3.87 16 13 C -0.54 -15.36 9.50 30.94 0.29 -15.07 16 14 H 0.07 1.95 7.80 -52.48 -0.41 1.54 16 15 C 0.07 2.10 5.49 -17.43 -0.10 2.01 16 16 N -0.87 -26.34 13.22 55.49 0.73 -25.61 16 17 Si 0.92 21.51 29.55 -169.99 -5.02 16.49 16 18 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 19 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 20 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 21 C -0.16 -1.19 9.90 -26.74 -0.26 -1.46 16 22 C -0.16 -1.25 9.84 -26.73 -0.26 -1.51 16 23 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 24 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 25 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 26 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 27 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 29 H 0.05 0.54 6.96 -51.93 -0.36 0.18 16 30 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.07 0.61 8.09 -51.93 -0.42 0.19 16 32 H 0.07 0.84 7.94 -51.93 -0.41 0.43 16 33 H 0.07 0.90 6.72 -51.93 -0.35 0.55 16 34 H 0.40 4.36 8.43 -40.82 -0.34 4.02 16 35 H 0.09 1.68 8.14 -51.91 -0.42 1.25 16 36 H 0.09 1.69 8.14 -51.91 -0.42 1.27 16 37 H 0.27 7.59 8.31 -40.82 -0.34 7.25 16 38 H 0.10 0.71 8.08 -51.93 -0.42 0.29 16 39 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.10 0.65 8.14 -51.93 -0.42 0.22 16 41 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 LS Contribution 360.33 15.07 5.43 5.43 Total: -1.00 -34.23 360.33 -8.36 -42.59 By element: Atomic # 1 Polarization: 7.17 SS G_CDS: -6.92 Total: 0.24 kcal Atomic # 6 Polarization: -8.85 SS G_CDS: 0.24 Total: -8.61 kcal Atomic # 7 Polarization: -36.27 SS G_CDS: 0.40 Total: -35.87 kcal Atomic # 8 Polarization: -16.13 SS G_CDS: -0.28 Total: -16.41 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Atomic # 16 Polarization: -1.66 SS G_CDS: -2.21 Total: -3.87 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -34.23 -8.36 -42.59 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000158374495.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.744 kcal (2) G-P(sol) polarization free energy of solvation -34.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.592 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds