Wall clock time and date at job start Tue Mar 31 2020 06:28:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42896 * 109.47151 * 2 1 4 4 C 1.42901 * 113.99796 * 180.02562 * 3 2 1 5 5 C 1.53007 * 109.46669 * 179.97438 * 4 3 2 6 6 C 1.53001 * 109.46635 * 185.12404 * 5 4 3 7 7 C 1.52999 * 115.54755 * 294.62022 * 6 5 4 8 8 N 1.46503 * 109.47175 * 279.24400 * 7 6 5 9 9 C 1.34773 * 119.99807 * 178.63506 * 8 7 6 10 10 O 1.21287 * 120.00496 * 359.72102 * 9 8 7 11 11 C 1.50705 * 120.00018 * 180.02562 * 9 8 7 12 12 S 1.80995 * 109.47391 * 179.72444 * 11 9 8 13 13 C 1.76197 * 100.00316 * 180.02562 * 12 11 9 14 14 H 1.08003 * 119.99906 * 359.97438 * 13 12 11 15 15 C 1.38795 * 120.00375 * 180.02562 * 13 12 11 16 16 N 1.31633 * 119.99756 * 359.97438 * 15 13 12 17 17 Si 1.86802 * 120.00133 * 179.97438 * 15 13 12 18 18 H 1.48508 * 109.46947 * 59.99841 * 17 15 13 19 19 H 1.48499 * 109.47129 * 179.97438 * 17 15 13 20 20 H 1.48495 * 109.46986 * 299.99541 * 17 15 13 21 21 C 1.52994 * 117.52256 * 80.32554 * 6 5 4 22 22 C 1.52997 * 60.00176 * 107.47977 * 21 6 5 23 23 H 1.08999 * 109.47177 * 299.99883 * 1 2 3 24 24 H 1.08996 * 109.47084 * 60.00714 * 1 2 3 25 25 H 1.09006 * 109.47120 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.47143 * 239.99357 * 2 1 3 27 27 H 1.09006 * 109.46939 * 119.99843 * 2 1 3 28 28 H 1.09000 * 109.47349 * 60.00239 * 4 3 2 29 29 H 1.08994 * 109.47144 * 299.99113 * 4 3 2 30 30 H 1.08993 * 109.47259 * 65.12019 * 5 4 3 31 31 H 1.08998 * 109.46967 * 305.11854 * 5 4 3 32 32 H 1.09001 * 109.46848 * 159.24551 * 7 6 5 33 33 H 1.08994 * 109.47472 * 39.24632 * 7 6 5 34 34 H 0.97000 * 120.00425 * 358.63162 * 8 7 6 35 35 H 1.09004 * 109.47055 * 299.72254 * 11 9 8 36 36 H 1.09003 * 109.47059 * 59.72412 * 11 9 8 37 37 H 0.97003 * 119.99523 * 180.02562 * 16 15 13 38 38 H 1.08999 * 117.50566 * 214.96921 * 21 6 5 39 39 H 1.09000 * 117.49701 * 359.97438 * 21 6 5 40 40 H 1.09000 * 117.49711 * 252.51255 * 22 21 6 41 41 H 1.08997 * 117.49912 * 107.49024 * 22 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.4309 1.4600 -0.0006 5 6 3.8254 2.9384 -0.0012 6 6 5.3450 3.0605 -0.1306 7 6 6.1537 2.5116 1.0464 8 7 6.1767 3.5009 2.1268 9 6 6.8119 3.2221 3.2823 10 8 7.3602 2.1504 3.4297 11 6 6.8351 4.2395 4.3938 12 16 7.7509 3.5711 5.8046 13 6 7.6230 4.9268 6.9227 14 1 7.0915 5.8202 6.6296 15 6 8.2060 4.8472 8.1797 16 7 8.8542 3.7585 8.5368 17 14 8.0709 6.2849 9.3648 18 1 6.6394 6.5585 9.6499 19 1 8.7722 5.9507 10.6304 20 1 8.6933 7.4880 8.7564 21 6 5.9489 2.9202 -1.5293 22 6 5.8957 4.2916 -0.8532 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5137 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 1.8934 -0.5139 -0.8899 27 1 1.8933 -0.5138 0.8901 28 1 3.8333 0.9766 -0.8908 29 1 3.8340 0.9765 0.8892 30 1 3.5017 3.4011 0.9310 31 1 3.3475 3.4415 -0.8417 32 1 7.1734 2.3047 0.7215 33 1 5.6932 1.5915 1.4061 34 1 5.7348 4.3565 2.0104 35 1 7.3216 5.1498 4.0432 36 1 5.8138 4.4678 4.6989 37 1 9.2613 3.7028 9.4155 38 1 6.9224 2.4368 -1.6111 39 1 5.2636 2.7403 -2.3576 40 1 5.1754 5.0142 -1.2367 41 1 6.8342 4.7104 -0.4900 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000158374495.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:28:27 Heat of formation + Delta-G solvation = -100.352296 kcal Electronic energy + Delta-G solvation = -19948.453891 eV Core-core repulsion = 16761.013236 eV Total energy + Delta-G solvation = -3187.440654 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 287.134 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.87500 -39.58370 -38.53296 -35.11673 -34.58301 -32.98571 -31.28996 -30.67686 -27.82392 -27.17647 -24.50046 -23.70739 -23.19593 -21.68095 -20.32640 -19.62760 -17.88302 -17.65695 -17.40924 -17.08202 -16.87849 -16.65296 -16.05545 -15.68920 -15.42863 -15.35134 -14.76947 -14.51322 -14.39582 -14.09929 -13.36101 -13.29774 -13.17288 -13.16809 -12.86636 -12.83242 -12.64686 -12.38009 -12.28201 -12.06551 -11.92178 -11.74902 -11.25089 -11.13007 -11.08799 -10.68348 -10.57304 -10.28521 -10.10432 -8.67235 -8.34641 -6.13017 1.26415 1.44103 1.46494 1.56396 1.60527 2.18985 2.27887 2.60715 2.96727 2.99351 3.32920 3.62342 3.68211 3.92273 3.97623 4.03464 4.13110 4.23961 4.26414 4.29759 4.45076 4.45452 4.49555 4.50536 4.64770 4.75197 4.80759 4.83714 5.00191 5.01475 5.06419 5.12867 5.19077 5.26165 5.28790 5.41258 5.42053 6.19581 6.24768 6.50488 7.06420 7.23362 8.74419 Molecular weight = 287.13amu Principal moments of inertia in cm(-1) A = 0.019230 B = 0.002902 C = 0.002694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1455.687162 B = 9644.543312 C =10392.643702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.049 3.951 3 O -0.411 6.411 4 C 0.062 3.938 5 C -0.071 4.071 6 C -0.146 4.146 7 C 0.157 3.843 8 N -0.708 5.708 9 C 0.533 3.467 10 O -0.568 6.568 11 C -0.129 4.129 12 S -0.152 6.152 13 C -0.547 4.547 14 H 0.083 0.917 15 C 0.013 3.987 16 N -0.912 5.912 17 Si 0.999 3.001 18 H -0.262 1.262 19 H -0.279 1.279 20 H -0.261 1.261 21 C -0.153 4.153 22 C -0.157 4.157 23 H 0.054 0.946 24 H 0.063 0.937 25 H 0.088 0.912 26 H 0.060 0.940 27 H 0.045 0.955 28 H 0.062 0.938 29 H 0.038 0.962 30 H 0.067 0.933 31 H 0.086 0.914 32 H 0.061 0.939 33 H 0.058 0.942 34 H 0.415 0.585 35 H 0.110 0.890 36 H 0.108 0.892 37 H 0.271 0.729 38 H 0.099 0.901 39 H 0.113 0.887 40 H 0.114 0.886 41 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.700 -0.462 -23.046 26.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.028 4.028 3 O -0.331 6.331 4 C -0.014 4.014 5 C -0.108 4.108 6 C -0.147 4.147 7 C 0.034 3.966 8 N -0.362 5.362 9 C 0.318 3.682 10 O -0.446 6.446 11 C -0.280 4.280 12 S 0.075 5.925 13 C -0.695 4.695 14 H 0.101 0.899 15 C -0.192 4.192 16 N -0.548 5.548 17 Si 0.821 3.179 18 H -0.187 1.187 19 H -0.204 1.204 20 H -0.186 1.186 21 C -0.190 4.190 22 C -0.194 4.194 23 H 0.074 0.926 24 H 0.082 0.918 25 H 0.107 0.893 26 H 0.078 0.922 27 H 0.064 0.936 28 H 0.080 0.920 29 H 0.056 0.944 30 H 0.085 0.915 31 H 0.105 0.895 32 H 0.079 0.921 33 H 0.076 0.924 34 H 0.252 0.748 35 H 0.128 0.872 36 H 0.127 0.873 37 H 0.080 0.920 38 H 0.117 0.883 39 H 0.132 0.868 40 H 0.132 0.868 41 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -12.830 -2.183 -22.701 26.167 hybrid contribution -0.387 1.670 0.862 1.918 sum -13.216 -0.513 -21.839 25.532 Atomic orbital electron populations 1.21762 0.92797 1.03349 1.02728 1.22641 0.96454 0.83063 1.00602 1.87823 1.21877 1.27816 1.95570 1.22523 0.80555 0.97959 1.00412 1.20908 0.91533 0.94857 1.03538 1.21376 0.93956 1.06063 0.93268 1.20841 0.99285 0.91095 0.85406 1.45749 1.55829 1.20775 1.13823 1.20079 0.77621 0.87139 0.83313 1.90689 1.46122 1.26404 1.81394 1.23369 1.05697 1.01622 0.97337 1.85566 1.70721 1.26250 1.09938 1.23174 1.41211 1.02856 1.02234 0.89897 1.26145 0.93774 0.99922 0.99366 1.70183 1.34101 1.29069 1.21467 0.84995 0.79022 0.77376 0.76548 1.18672 1.20382 1.18590 1.23155 1.02680 0.99884 0.93278 1.23126 1.03088 0.91003 1.02142 0.92646 0.91778 0.89307 0.92225 0.93650 0.91977 0.94412 0.91473 0.89517 0.92086 0.92352 0.74810 0.87150 0.87349 0.91981 0.88280 0.86824 0.86765 0.88584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.96 10.28 71.98 0.74 -1.22 16 2 C 0.05 0.79 6.66 71.98 0.48 1.26 16 3 O -0.41 -8.47 10.34 -148.98 -1.54 -10.01 16 4 C 0.06 1.11 5.70 71.98 0.41 1.52 16 5 C -0.07 -1.12 5.47 30.60 0.17 -0.95 16 6 C -0.15 -2.23 1.52 -52.18 -0.08 -2.31 16 7 C 0.16 3.58 5.54 86.38 0.48 4.06 16 8 N -0.71 -18.28 5.51 -463.05 -2.55 -20.83 16 9 C 0.53 19.97 7.85 87.66 0.69 20.66 16 10 O -0.57 -26.71 15.86 -3.05 -0.05 -26.76 16 11 C -0.13 -5.18 6.16 71.24 0.44 -4.74 16 12 S -0.15 -8.53 20.57 -56.49 -1.16 -9.70 16 13 C -0.55 -31.47 9.50 67.95 0.65 -30.83 16 14 H 0.08 4.41 7.80 -2.91 -0.02 4.39 16 15 C 0.01 0.72 5.49 84.86 0.47 1.19 16 16 N -0.91 -56.44 13.22 21.65 0.29 -56.16 16 17 Si 1.00 43.78 29.55 68.60 2.03 45.80 16 18 H -0.26 -10.90 7.11 99.48 0.71 -10.19 16 19 H -0.28 -11.90 7.11 99.48 0.71 -11.19 16 20 H -0.26 -10.83 7.11 99.48 0.71 -10.12 16 21 C -0.15 -1.81 9.90 30.59 0.30 -1.51 16 22 C -0.16 -1.91 9.84 30.59 0.30 -1.61 16 23 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 24 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 25 H 0.09 0.82 8.14 -2.38 -0.02 0.80 16 26 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 27 H 0.05 0.75 8.14 -2.38 -0.02 0.73 16 28 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 29 H 0.04 0.78 6.96 -2.39 -0.02 0.76 16 30 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 31 H 0.09 1.18 8.09 -2.39 -0.02 1.16 16 32 H 0.06 1.50 7.94 -2.39 -0.02 1.48 16 33 H 0.06 1.51 6.72 -2.39 -0.02 1.49 16 34 H 0.42 8.13 8.43 -92.71 -0.78 7.35 16 35 H 0.11 3.96 8.14 -2.39 -0.02 3.94 16 36 H 0.11 3.94 8.14 -2.39 -0.02 3.92 16 37 H 0.27 15.60 8.31 -92.71 -0.77 14.83 16 38 H 0.10 1.21 8.08 -2.39 -0.02 1.19 16 39 H 0.11 1.04 8.14 -2.39 -0.02 1.02 16 40 H 0.11 1.08 8.14 -2.39 -0.02 1.06 16 41 H 0.10 1.30 8.14 -2.39 -0.02 1.28 16 Total: -1.00 -76.04 360.33 2.27 -73.77 By element: Atomic # 1 Polarization: 18.13 SS G_CDS: 0.22 Total: 18.35 kcal Atomic # 6 Polarization: -19.51 SS G_CDS: 5.04 Total: -14.47 kcal Atomic # 7 Polarization: -74.72 SS G_CDS: -2.27 Total: -76.99 kcal Atomic # 8 Polarization: -35.18 SS G_CDS: -1.59 Total: -36.77 kcal Atomic # 14 Polarization: 43.78 SS G_CDS: 2.03 Total: 45.80 kcal Atomic # 16 Polarization: -8.53 SS G_CDS: -1.16 Total: -9.70 kcal Total: -76.04 2.27 -73.77 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000158374495.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.584 kcal (2) G-P(sol) polarization free energy of solvation -76.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.270 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.769 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds