Wall clock time and date at job start Tue Mar 31 2020 05:59:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.47090 * 2 1 4 4 S 1.81403 * 109.47008 * 239.99837 * 2 1 3 5 5 C 1.81394 * 102.99898 * 64.99822 * 4 2 1 6 6 H 1.08999 * 110.44029 * 52.45999 * 5 4 2 7 7 C 1.54807 * 110.49022 * 289.76685 * 5 4 2 8 8 C 1.55001 * 102.09432 * 220.44523 * 7 5 4 9 9 O 1.44378 * 103.48899 * 37.02220 * 8 7 5 10 10 C 1.43741 * 106.97483 * 319.94112 * 9 8 7 11 11 H 1.09000 * 109.87741 * 267.08476 * 10 9 8 12 12 C 1.53006 * 110.00076 * 146.00959 * 10 9 8 13 13 C 1.50696 * 109.47088 * 119.99691 * 2 1 3 14 14 O 1.21284 * 120.00064 * 99.99923 * 13 2 1 15 15 N 1.34783 * 120.00310 * 279.99554 * 13 2 1 16 16 C 1.46497 * 119.99658 * 0.02562 * 15 13 2 17 17 C 1.46493 * 120.00107 * 179.97438 * 15 13 2 18 18 C 1.50706 * 109.47128 * 90.00402 * 17 15 13 19 19 H 1.08000 * 119.99302 * 359.97438 * 18 17 15 20 20 C 1.37871 * 120.00436 * 179.72498 * 18 17 15 21 21 N 1.31515 * 119.99684 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 120.00405 * 180.02562 * 20 18 17 23 23 H 1.48496 * 109.46683 * 359.97438 * 22 20 18 24 24 H 1.48492 * 109.47426 * 119.99743 * 22 20 18 25 25 H 1.48501 * 109.46833 * 239.99986 * 22 20 18 26 26 H 1.08995 * 109.47319 * 59.99883 * 1 2 3 27 27 H 1.09003 * 109.47678 * 180.02562 * 1 2 3 28 28 H 1.09007 * 109.47358 * 300.00515 * 1 2 3 29 29 H 1.08999 * 110.90768 * 338.64333 * 7 5 4 30 30 H 1.09000 * 110.91004 * 102.24974 * 7 5 4 31 31 H 1.09001 * 110.61675 * 278.52129 * 8 7 5 32 32 H 1.09000 * 110.62038 * 155.52350 * 8 7 5 33 33 H 1.09001 * 109.47010 * 302.08800 * 12 10 9 34 34 H 1.08996 * 109.47238 * 62.09398 * 12 10 9 35 35 H 1.08998 * 109.46711 * 182.09257 * 12 10 9 36 36 H 1.09001 * 109.46952 * 269.99864 * 16 15 13 37 37 H 1.08998 * 109.47569 * 29.99343 * 16 15 13 38 38 H 1.08997 * 109.47185 * 150.00014 * 16 15 13 39 39 H 1.09001 * 109.47786 * 330.00675 * 17 15 13 40 40 H 1.08998 * 109.47558 * 210.00538 * 17 15 13 41 41 H 0.97004 * 120.00247 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 16 2.1346 -0.8552 -1.4811 5 6 1.5663 0.2152 -2.8309 6 1 1.8812 1.2444 -2.6588 7 6 0.0272 0.1334 -2.9760 8 6 -0.1536 0.1199 -4.5153 9 8 0.9635 -0.6687 -4.9787 10 6 2.1007 -0.2932 -4.1839 11 1 2.6571 0.4995 -4.6842 12 6 3.0079 -1.5053 -3.9627 13 6 2.0323 -0.7103 1.2305 14 8 2.4064 -1.8616 1.1558 15 7 2.0659 -0.0662 2.4140 16 6 1.6136 1.3242 2.5042 17 6 2.5537 -0.7570 3.6102 18 6 4.0405 -0.5475 3.7401 19 1 4.5691 0.0410 3.0048 20 6 4.7249 -1.1027 4.8003 21 7 4.0802 -1.8148 5.6986 22 14 6.5677 -0.8425 4.9617 23 1 7.0509 -0.0103 3.8307 24 1 6.8598 -0.1533 6.2441 25 1 7.2572 -2.1575 4.9381 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5139 0.8900 29 1 -0.3572 -0.7845 -2.5311 30 1 -0.4520 1.0078 -2.5357 31 1 -0.1017 1.1320 -4.9167 32 1 -1.0969 -0.3539 -4.7869 33 1 2.4405 -2.3002 -3.4785 34 1 3.3820 -1.8593 -4.9233 35 1 3.8473 -1.2200 -3.3287 36 1 2.4555 1.9926 2.3234 37 1 0.8402 1.5040 1.7575 38 1 1.2087 1.5108 3.4988 39 1 2.3431 -1.8231 3.5256 40 1 2.0520 -0.3564 4.4911 41 1 4.5617 -2.2051 6.4448 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000163847792.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:30 Heat of formation + Delta-G solvation = -75.214382 kcal Electronic energy + Delta-G solvation = -21253.797066 eV Core-core repulsion = 18067.446473 eV Total energy + Delta-G solvation = -3186.350593 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 287.134 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.64938 -39.10947 -34.88312 -33.62274 -32.62497 -32.30108 -31.37178 -27.79426 -26.19095 -26.04725 -24.50208 -22.55507 -22.29982 -21.35580 -18.69971 -17.07199 -16.66892 -16.59962 -16.43153 -15.90368 -15.46896 -14.92782 -14.64217 -14.21709 -13.89220 -13.60154 -13.42832 -13.17397 -12.75178 -12.70195 -12.31072 -12.19002 -12.04932 -11.91010 -11.80587 -11.62323 -11.27573 -11.22250 -11.10819 -10.95276 -10.79005 -10.59636 -10.15997 -9.95062 -9.63624 -9.50370 -8.97811 -8.44744 -7.71653 -7.49123 -6.05553 -4.10171 1.54837 2.54013 3.29688 3.33164 3.37915 3.42499 3.59652 3.88739 4.13597 4.44230 4.50642 4.73482 4.77879 4.89731 4.93858 5.01525 5.13544 5.18767 5.26840 5.29421 5.36277 5.41121 5.46019 5.58554 5.68765 5.71818 5.77023 5.86978 5.88215 6.02950 6.17108 6.21708 6.65274 6.98240 7.39371 7.48878 7.90425 8.20993 8.31645 8.86286 9.01714 9.54961 11.02680 Molecular weight = 287.13amu Principal moments of inertia in cm(-1) A = 0.027241 B = 0.003951 C = 0.003646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1027.618813 B = 7085.228771 C = 7677.946474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.110 4.110 3 H 0.100 0.900 4 S -0.138 6.138 5 C -0.119 4.119 6 H 0.096 0.904 7 C -0.152 4.152 8 C 0.048 3.952 9 O -0.370 6.370 10 C 0.101 3.899 11 H 0.076 0.924 12 C -0.162 4.162 13 C 0.526 3.474 14 O -0.522 6.522 15 N -0.597 5.597 16 C 0.080 3.920 17 C 0.246 3.754 18 C -0.526 4.526 19 H 0.058 0.942 20 C 0.061 3.939 21 N -0.895 5.895 22 Si 0.898 3.102 23 H -0.273 1.273 24 H -0.283 1.283 25 H -0.282 1.282 26 H 0.071 0.929 27 H 0.073 0.927 28 H 0.068 0.932 29 H 0.095 0.905 30 H 0.084 0.916 31 H 0.060 0.940 32 H 0.095 0.905 33 H 0.077 0.923 34 H 0.066 0.934 35 H 0.084 0.916 36 H 0.050 0.950 37 H 0.058 0.942 38 H 0.070 0.930 39 H 0.044 0.956 40 H 0.034 0.966 41 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.651 8.667 -17.443 21.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.242 4.242 3 H 0.118 0.882 4 S 0.092 5.908 5 C -0.249 4.249 6 H 0.114 0.886 7 C -0.191 4.191 8 C -0.030 4.030 9 O -0.289 6.289 10 C 0.042 3.958 11 H 0.093 0.907 12 C -0.220 4.220 13 C 0.310 3.690 14 O -0.398 6.398 15 N -0.329 5.329 16 C -0.064 4.064 17 C 0.127 3.873 18 C -0.565 4.565 19 H 0.076 0.924 20 C -0.141 4.141 21 N -0.534 5.534 22 Si 0.726 3.274 23 H -0.198 1.198 24 H -0.210 1.210 25 H -0.208 1.208 26 H 0.090 0.910 27 H 0.092 0.908 28 H 0.087 0.913 29 H 0.114 0.886 30 H 0.103 0.897 31 H 0.078 0.922 32 H 0.113 0.887 33 H 0.096 0.904 34 H 0.085 0.915 35 H 0.103 0.897 36 H 0.068 0.932 37 H 0.076 0.924 38 H 0.089 0.911 39 H 0.062 0.938 40 H 0.051 0.949 41 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -8.813 6.845 -17.472 20.732 hybrid contribution 0.347 1.776 0.641 1.920 sum -8.466 8.621 -16.831 20.719 Atomic orbital electron populations 1.22301 0.91787 1.03984 1.02953 1.23575 1.00342 1.03222 0.97046 0.88222 1.87715 1.73447 1.33939 0.95696 1.24785 0.98736 1.02748 0.98622 0.88580 1.23780 0.93963 1.04062 0.97307 1.23541 0.90844 0.95817 0.92749 1.88911 1.18733 1.63206 1.58078 1.22468 0.88111 0.97666 0.87513 0.90662 1.21874 0.99936 0.97954 1.02284 1.19357 0.79376 0.86854 0.83402 1.90708 1.47462 1.17129 1.84493 1.48057 1.62504 1.12563 1.09807 1.21748 0.98709 0.83737 1.02239 1.19346 0.94351 0.93698 0.79882 1.21455 0.93047 1.32725 1.09248 0.92406 1.24932 0.98710 0.94897 0.95557 1.69940 1.36023 1.34231 1.13211 0.86432 0.85097 0.78076 0.77780 1.19779 1.20962 1.20794 0.91029 0.90836 0.91323 0.88645 0.89712 0.92209 0.88712 0.90406 0.91473 0.89716 0.93165 0.92389 0.91145 0.93764 0.94850 0.92743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.80 8.15 37.16 0.30 -1.50 16 2 C -0.11 -1.67 2.34 -27.89 -0.07 -1.73 16 3 H 0.10 1.34 7.21 -51.92 -0.37 0.96 16 4 S -0.14 -2.07 16.59 -107.50 -1.78 -3.85 16 5 C -0.12 -1.26 3.52 -25.20 -0.09 -1.35 16 6 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 7 C -0.15 -1.33 4.68 -24.72 -0.12 -1.45 16 8 C 0.05 0.40 7.72 38.21 0.29 0.70 16 9 O -0.37 -4.24 11.19 -35.23 -0.39 -4.64 16 10 C 0.10 1.08 4.05 -26.15 -0.11 0.98 16 11 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 12 C -0.16 -1.87 8.30 37.16 0.31 -1.56 16 13 C 0.53 11.08 6.85 -10.98 -0.08 11.00 16 14 O -0.52 -13.44 15.62 5.55 0.09 -13.35 16 15 N -0.60 -12.66 2.86 -182.96 -0.52 -13.18 16 16 C 0.08 1.24 9.93 59.85 0.59 1.83 16 17 C 0.25 6.47 5.20 -5.19 -0.03 6.45 16 18 C -0.53 -15.07 9.39 -34.44 -0.32 -15.40 16 19 H 0.06 1.67 7.81 -52.49 -0.41 1.26 16 20 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 21 N -0.89 -26.73 13.29 55.43 0.74 -25.99 16 22 Si 0.90 22.06 29.54 -169.99 -5.02 17.04 16 23 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 24 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 25 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 26 H 0.07 0.65 4.39 -51.93 -0.23 0.42 16 27 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 28 H 0.07 0.76 6.33 -51.93 -0.33 0.43 16 29 H 0.10 0.95 7.31 -51.93 -0.38 0.57 16 30 H 0.08 0.58 6.82 -51.93 -0.35 0.23 16 31 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.08 1.02 7.16 -51.93 -0.37 0.65 16 34 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.08 1.01 7.39 -51.93 -0.38 0.62 16 36 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.06 0.69 4.76 -51.93 -0.25 0.45 16 38 H 0.07 1.04 7.89 -51.93 -0.41 0.63 16 39 H 0.04 1.31 7.42 -51.93 -0.39 0.93 16 40 H 0.03 0.88 7.89 -51.93 -0.41 0.47 16 41 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 LS Contribution 333.67 15.07 5.03 5.03 Total: -1.00 -34.00 333.67 -7.64 -41.64 By element: Atomic # 1 Polarization: 4.06 SS G_CDS: -6.38 Total: -2.32 kcal Atomic # 6 Polarization: -0.97 SS G_CDS: 0.60 Total: -0.37 kcal Atomic # 7 Polarization: -39.39 SS G_CDS: 0.21 Total: -39.18 kcal Atomic # 8 Polarization: -17.68 SS G_CDS: -0.31 Total: -17.99 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.04 kcal Atomic # 16 Polarization: -2.07 SS G_CDS: -1.78 Total: -3.85 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -34.00 -7.64 -41.64 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000163847792.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.574 kcal (2) G-P(sol) polarization free energy of solvation -33.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.641 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds