Wall clock time and date at job start Tue Mar 31 2020 05:59:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.47090 * 2 1 4 4 S 1.81403 * 109.47008 * 239.99837 * 2 1 3 5 5 C 1.81394 * 102.99898 * 64.99822 * 4 2 1 6 6 H 1.08999 * 110.44029 * 52.45999 * 5 4 2 7 7 C 1.54807 * 110.49022 * 289.76685 * 5 4 2 8 8 C 1.55001 * 102.09432 * 220.44523 * 7 5 4 9 9 O 1.44378 * 103.48899 * 37.02220 * 8 7 5 10 10 C 1.43741 * 106.97483 * 319.94112 * 9 8 7 11 11 H 1.09000 * 109.87741 * 267.08476 * 10 9 8 12 12 C 1.53006 * 110.00076 * 146.00959 * 10 9 8 13 13 C 1.50696 * 109.47088 * 119.99691 * 2 1 3 14 14 O 1.21284 * 120.00064 * 99.99923 * 13 2 1 15 15 N 1.34783 * 120.00310 * 279.99554 * 13 2 1 16 16 C 1.46497 * 119.99658 * 0.02562 * 15 13 2 17 17 C 1.46493 * 120.00107 * 179.97438 * 15 13 2 18 18 C 1.50706 * 109.47128 * 90.00402 * 17 15 13 19 19 H 1.08000 * 119.99302 * 359.97438 * 18 17 15 20 20 C 1.37871 * 120.00436 * 179.72498 * 18 17 15 21 21 N 1.31515 * 119.99684 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 120.00405 * 180.02562 * 20 18 17 23 23 H 1.48496 * 109.46683 * 359.97438 * 22 20 18 24 24 H 1.48492 * 109.47426 * 119.99743 * 22 20 18 25 25 H 1.48501 * 109.46833 * 239.99986 * 22 20 18 26 26 H 1.08995 * 109.47319 * 59.99883 * 1 2 3 27 27 H 1.09003 * 109.47678 * 180.02562 * 1 2 3 28 28 H 1.09007 * 109.47358 * 300.00515 * 1 2 3 29 29 H 1.08999 * 110.90768 * 338.64333 * 7 5 4 30 30 H 1.09000 * 110.91004 * 102.24974 * 7 5 4 31 31 H 1.09001 * 110.61675 * 278.52129 * 8 7 5 32 32 H 1.09000 * 110.62038 * 155.52350 * 8 7 5 33 33 H 1.09001 * 109.47010 * 302.08800 * 12 10 9 34 34 H 1.08996 * 109.47238 * 62.09398 * 12 10 9 35 35 H 1.08998 * 109.46711 * 182.09257 * 12 10 9 36 36 H 1.09001 * 109.46952 * 269.99864 * 16 15 13 37 37 H 1.08998 * 109.47569 * 29.99343 * 16 15 13 38 38 H 1.08997 * 109.47185 * 150.00014 * 16 15 13 39 39 H 1.09001 * 109.47786 * 330.00675 * 17 15 13 40 40 H 1.08998 * 109.47558 * 210.00538 * 17 15 13 41 41 H 0.97004 * 120.00247 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 16 2.1346 -0.8552 -1.4811 5 6 1.5663 0.2152 -2.8309 6 1 1.8812 1.2444 -2.6588 7 6 0.0272 0.1334 -2.9760 8 6 -0.1536 0.1199 -4.5153 9 8 0.9635 -0.6687 -4.9787 10 6 2.1007 -0.2932 -4.1839 11 1 2.6571 0.4995 -4.6842 12 6 3.0079 -1.5053 -3.9627 13 6 2.0323 -0.7103 1.2305 14 8 2.4064 -1.8616 1.1558 15 7 2.0659 -0.0662 2.4140 16 6 1.6136 1.3242 2.5042 17 6 2.5537 -0.7570 3.6102 18 6 4.0405 -0.5475 3.7401 19 1 4.5691 0.0410 3.0048 20 6 4.7249 -1.1027 4.8003 21 7 4.0802 -1.8148 5.6986 22 14 6.5677 -0.8425 4.9617 23 1 7.0509 -0.0103 3.8307 24 1 6.8598 -0.1533 6.2441 25 1 7.2572 -2.1575 4.9381 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5139 0.8900 29 1 -0.3572 -0.7845 -2.5311 30 1 -0.4520 1.0078 -2.5357 31 1 -0.1017 1.1320 -4.9167 32 1 -1.0969 -0.3539 -4.7869 33 1 2.4405 -2.3002 -3.4785 34 1 3.3820 -1.8593 -4.9233 35 1 3.8473 -1.2200 -3.3287 36 1 2.4555 1.9926 2.3234 37 1 0.8402 1.5040 1.7575 38 1 1.2087 1.5108 3.4988 39 1 2.3431 -1.8231 3.5256 40 1 2.0520 -0.3564 4.4911 41 1 4.5617 -2.2051 6.4448 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000163847792.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:30 Heat of formation + Delta-G solvation = -98.200144 kcal Electronic energy + Delta-G solvation = -21254.793803 eV Core-core repulsion = 18067.446473 eV Total energy + Delta-G solvation = -3187.347330 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 287.134 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.76596 -40.40722 -36.66624 -35.12617 -34.20246 -33.32524 -32.25523 -29.71114 -27.51513 -26.98464 -26.04179 -24.22584 -23.08953 -22.23170 -20.25464 -18.75427 -18.11937 -17.88553 -17.66253 -16.92069 -16.64690 -16.41588 -16.09853 -15.72193 -15.04282 -14.68406 -14.61906 -14.25886 -14.21963 -13.79621 -13.59677 -13.54844 -13.41833 -13.14661 -12.94822 -12.93852 -12.85812 -12.59030 -12.52622 -12.24304 -12.03772 -11.86853 -11.76121 -11.71599 -10.70507 -10.67135 -10.64089 -10.49938 -9.49518 -8.64535 -8.25265 -6.39999 0.46231 1.34367 1.37421 1.48647 1.50667 1.77690 2.27231 2.42059 2.87902 3.04483 3.38009 3.55857 3.74536 3.89446 3.99747 4.01424 4.09645 4.27888 4.31131 4.37076 4.55264 4.57976 4.63079 4.70716 4.72721 4.83551 4.87192 4.92386 4.97120 4.99025 5.10565 5.17170 5.17692 5.28015 5.52057 5.78727 5.92928 6.02471 6.62604 6.70984 7.23557 7.39109 8.82144 Molecular weight = 287.13amu Principal moments of inertia in cm(-1) A = 0.027241 B = 0.003951 C = 0.003646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1027.618813 B = 7085.228771 C = 7677.946474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.091 4.091 3 H 0.126 0.874 4 S -0.209 6.209 5 C -0.100 4.100 6 H 0.119 0.881 7 C -0.150 4.150 8 C 0.046 3.954 9 O -0.393 6.393 10 C 0.100 3.900 11 H 0.097 0.903 12 C -0.160 4.160 13 C 0.514 3.486 14 O -0.583 6.583 15 N -0.604 5.604 16 C 0.073 3.927 17 C 0.260 3.740 18 C -0.543 4.543 19 H 0.051 0.949 20 C 0.008 3.992 21 N -0.928 5.928 22 Si 0.968 3.032 23 H -0.268 1.268 24 H -0.266 1.266 25 H -0.282 1.282 26 H 0.108 0.892 27 H 0.054 0.946 28 H 0.082 0.918 29 H 0.080 0.920 30 H 0.115 0.885 31 H 0.083 0.917 32 H 0.106 0.894 33 H 0.054 0.946 34 H 0.075 0.925 35 H 0.076 0.924 36 H 0.058 0.942 37 H 0.101 0.899 38 H 0.075 0.925 39 H -0.003 1.003 40 H 0.028 0.972 41 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.256 11.750 -18.988 24.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.222 4.222 3 H 0.144 0.856 4 S 0.021 5.979 5 C -0.229 4.229 6 H 0.137 0.863 7 C -0.189 4.189 8 C -0.031 4.031 9 O -0.313 6.313 10 C 0.041 3.959 11 H 0.115 0.885 12 C -0.219 4.219 13 C 0.301 3.699 14 O -0.463 6.463 15 N -0.335 5.335 16 C -0.069 4.069 17 C 0.139 3.861 18 C -0.582 4.582 19 H 0.069 0.931 20 C -0.191 4.191 21 N -0.567 5.567 22 Si 0.792 3.208 23 H -0.192 1.192 24 H -0.191 1.191 25 H -0.208 1.208 26 H 0.126 0.874 27 H 0.073 0.927 28 H 0.101 0.899 29 H 0.098 0.902 30 H 0.133 0.867 31 H 0.101 0.899 32 H 0.124 0.876 33 H 0.073 0.927 34 H 0.094 0.906 35 H 0.095 0.905 36 H 0.077 0.923 37 H 0.120 0.880 38 H 0.094 0.906 39 H 0.015 0.985 40 H 0.046 0.954 41 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -9.451 9.982 -19.022 23.469 hybrid contribution 0.488 0.786 1.065 1.411 sum -8.963 10.768 -17.957 22.776 Atomic orbital electron populations 1.22326 0.89025 1.03639 1.05380 1.23412 1.02225 1.02996 0.93558 0.85624 1.88098 1.74668 1.36815 0.98329 1.24839 0.99994 1.02238 0.95848 0.86254 1.23781 0.92452 1.04693 0.97972 1.23763 0.90363 0.96814 0.92184 1.88893 1.19701 1.64345 1.58402 1.22530 0.88104 0.97425 0.87803 0.88534 1.21817 0.99752 0.98101 1.02219 1.20418 0.78159 0.86454 0.84847 1.90671 1.49966 1.20027 1.85644 1.48065 1.62243 1.14628 1.08566 1.22073 1.00228 0.80312 1.04241 1.18807 0.93685 0.91632 0.82010 1.21709 0.94302 1.32922 1.09273 0.93069 1.25850 1.03705 0.94389 0.95133 1.70051 1.38042 1.34881 1.13771 0.85366 0.78943 0.78031 0.78471 1.19222 1.19133 1.20770 0.87360 0.92720 0.89942 0.90151 0.86697 0.89904 0.87553 0.92737 0.90619 0.90534 0.92323 0.88037 0.90573 0.98535 0.95357 0.92335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.05 8.15 71.98 0.59 -2.46 16 2 C -0.09 -2.60 2.34 29.85 0.07 -2.53 16 3 H 0.13 2.92 7.21 -2.39 -0.02 2.90 16 4 S -0.21 -6.20 16.59 -56.49 -0.94 -7.13 16 5 C -0.10 -1.83 3.52 31.58 0.11 -1.72 16 6 H 0.12 1.68 8.14 -2.39 -0.02 1.66 16 7 C -0.15 -2.08 4.68 31.90 0.15 -1.93 16 8 C 0.05 0.60 7.72 72.67 0.56 1.16 16 9 O -0.39 -8.15 11.19 -148.98 -1.67 -9.82 16 10 C 0.10 1.93 4.05 30.97 0.13 2.05 16 11 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 12 C -0.16 -3.69 8.30 71.98 0.60 -3.10 16 13 C 0.51 22.02 6.85 87.65 0.60 22.62 16 14 O -0.58 -31.72 15.62 -3.04 -0.05 -31.76 16 15 N -0.60 -25.82 2.86 -851.15 -2.43 -28.25 16 16 C 0.07 2.12 9.93 127.77 1.27 3.39 16 17 C 0.26 14.25 5.20 85.64 0.45 14.70 16 18 C -0.54 -31.95 9.39 25.60 0.24 -31.71 16 19 H 0.05 3.00 7.81 -2.91 -0.02 2.98 16 20 C 0.01 0.48 5.46 84.65 0.46 0.94 16 21 N -0.93 -56.71 13.29 21.45 0.28 -56.43 16 22 Si 0.97 45.61 29.54 68.60 2.03 47.64 16 23 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 24 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 25 H -0.28 -13.21 7.11 99.48 0.71 -12.50 16 26 H 0.11 1.47 4.39 -2.39 -0.01 1.46 16 27 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 28 H 0.08 1.51 6.33 -2.38 -0.02 1.49 16 29 H 0.08 1.41 7.31 -2.39 -0.02 1.40 16 30 H 0.11 0.92 6.82 -2.39 -0.02 0.90 16 31 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 32 H 0.11 1.14 8.14 -2.39 -0.02 1.12 16 33 H 0.05 1.50 7.16 -2.39 -0.02 1.48 16 34 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 35 H 0.08 1.86 7.39 -2.39 -0.02 1.84 16 36 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 37 H 0.10 2.03 4.76 -2.39 -0.01 2.02 16 38 H 0.08 2.12 7.89 -2.39 -0.02 2.10 16 39 H 0.00 -0.22 7.42 -2.39 -0.02 -0.24 16 40 H 0.03 1.55 7.89 -2.39 -0.02 1.53 16 41 H 0.27 15.27 8.31 -92.71 -0.77 14.50 16 Total: -1.00 -79.14 333.67 3.46 -75.68 By element: Atomic # 1 Polarization: 7.66 SS G_CDS: 1.01 Total: 8.67 kcal Atomic # 6 Polarization: -3.81 SS G_CDS: 5.22 Total: 1.41 kcal Atomic # 7 Polarization: -82.54 SS G_CDS: -2.15 Total: -84.68 kcal Atomic # 8 Polarization: -39.87 SS G_CDS: -1.71 Total: -41.58 kcal Atomic # 14 Polarization: 45.61 SS G_CDS: 2.03 Total: 47.64 kcal Atomic # 16 Polarization: -6.20 SS G_CDS: -0.94 Total: -7.13 kcal Total: -79.14 3.46 -75.68 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000163847792.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.522 kcal (2) G-P(sol) polarization free energy of solvation -79.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.659 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.678 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds