Wall clock time and date at job start Tue Mar 31 2020 05:59:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08996 * 109.46954 * 2 1 4 4 S 1.81399 * 109.46843 * 239.99933 * 2 1 3 5 5 C 1.81402 * 103.00165 * 65.00276 * 4 2 1 6 6 H 1.09000 * 110.74678 * 308.47276 * 5 4 2 7 7 C 1.55307 * 110.84941 * 72.16403 * 5 4 2 8 8 C 1.54946 * 100.94299 * 152.32367 * 7 5 4 9 9 O 1.43649 * 105.13458 * 323.56089 * 8 7 5 10 10 C 1.43236 * 109.97423 * 24.42243 * 9 8 7 11 11 H 1.08997 * 109.90555 * 238.73569 * 10 9 8 12 12 C 1.53004 * 109.82660 * 117.80146 * 10 9 8 13 13 C 1.50697 * 109.47145 * 119.99903 * 2 1 3 14 14 O 1.21290 * 119.99894 * 99.99399 * 13 2 1 15 15 N 1.34772 * 120.00198 * 280.00163 * 13 2 1 16 16 C 1.46499 * 119.99867 * 359.97438 * 15 13 2 17 17 C 1.46506 * 120.00199 * 179.97438 * 15 13 2 18 18 C 1.50696 * 109.46871 * 89.99405 * 17 15 13 19 19 H 1.07999 * 120.00319 * 0.02562 * 18 17 15 20 20 C 1.37885 * 119.99717 * 180.02562 * 18 17 15 21 21 N 1.31516 * 119.99913 * 180.02562 * 20 18 17 22 22 Si 1.86798 * 119.99766 * 0.02562 * 20 18 17 23 23 H 1.48500 * 109.47353 * 269.99586 * 22 20 18 24 24 H 1.48501 * 109.47293 * 30.00037 * 22 20 18 25 25 H 1.48504 * 109.46680 * 149.99835 * 22 20 18 26 26 H 1.09001 * 109.47624 * 179.97438 * 1 2 3 27 27 H 1.09005 * 109.47384 * 300.00256 * 1 2 3 28 28 H 1.08998 * 109.47042 * 59.99444 * 1 2 3 29 29 H 1.09003 * 111.12585 * 270.24600 * 7 5 4 30 30 H 1.09005 * 111.12447 * 34.40365 * 7 5 4 31 31 H 1.08998 * 110.31157 * 204.63969 * 8 7 5 32 32 H 1.09005 * 110.30631 * 82.47574 * 8 7 5 33 33 H 1.08995 * 109.47524 * 301.86674 * 12 10 9 34 34 H 1.08997 * 109.46815 * 61.86791 * 12 10 9 35 35 H 1.08999 * 109.46383 * 181.86489 * 12 10 9 36 36 H 1.09001 * 109.47028 * 270.00104 * 16 15 13 37 37 H 1.08994 * 109.47418 * 30.00487 * 16 15 13 38 38 H 1.09004 * 109.47077 * 150.00105 * 16 15 13 39 39 H 1.09005 * 109.46943 * 329.99725 * 17 15 13 40 40 H 1.09002 * 109.47064 * 209.99988 * 17 15 13 41 41 H 0.97001 * 119.99646 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 16 2.1346 -0.8552 -1.4811 5 6 1.5664 0.2153 -2.8309 6 1 0.5008 0.4238 -2.7359 7 6 2.3897 1.5314 -2.8766 8 6 2.2857 1.8914 -4.3801 9 8 2.3279 0.6326 -5.0709 10 6 1.8825 -0.4167 -4.2035 11 1 2.6667 -1.1656 -4.0940 12 6 0.6219 -1.0655 -4.7788 13 6 2.0323 -0.7104 1.2305 14 8 2.4064 -1.8617 1.1558 15 7 2.0659 -0.0664 2.4139 16 6 1.6145 1.3244 2.5040 17 6 2.5537 -0.7572 3.6102 18 6 4.0404 -0.5478 3.7400 19 1 4.5689 0.0413 3.0052 20 6 4.7258 -1.1083 4.7970 21 7 6.0232 -0.9251 4.9106 22 14 3.8117 -2.1277 6.0675 23 1 3.3401 -1.2449 7.1645 24 1 2.6455 -2.7874 5.4270 25 1 4.7227 -3.1616 6.6212 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 1.9331 2.3022 -2.2556 30 1 3.4254 1.3572 -2.5850 31 1 3.1280 2.5154 -4.6788 32 1 1.3446 2.4027 -4.5824 33 1 -0.1531 -0.3088 -4.9006 34 1 0.8515 -1.5096 -5.7474 35 1 0.2693 -1.8404 -4.0982 36 1 2.4569 1.9922 2.3236 37 1 0.8415 1.5047 1.7571 38 1 1.2092 1.5111 3.4986 39 1 2.3430 -1.8233 3.5255 40 1 2.0520 -0.3566 4.4911 41 1 6.5053 -1.3191 5.6544 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000163848024.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:35 Heat of formation + Delta-G solvation = -77.100544 kcal Electronic energy + Delta-G solvation = -21126.874222 eV Core-core repulsion = 17940.441840 eV Total energy + Delta-G solvation = -3186.432383 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 287.134 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.66828 -39.27482 -35.04551 -33.50838 -32.58410 -32.21118 -31.66223 -28.46047 -26.37831 -26.19104 -24.50746 -22.27506 -22.14251 -21.43098 -18.76053 -17.47908 -16.98929 -16.76893 -16.67802 -15.77960 -15.04239 -14.88306 -14.59662 -14.35959 -14.01396 -13.81451 -13.53348 -13.22256 -12.98667 -12.63859 -12.44678 -12.26786 -12.24813 -12.08869 -11.93173 -11.83478 -11.60402 -11.51017 -11.23281 -11.08788 -10.86188 -10.54292 -10.14869 -9.78765 -9.73313 -9.57867 -9.15162 -8.61309 -7.82059 -7.59723 -6.10515 -4.09762 1.42923 2.43468 3.19883 3.24943 3.33660 3.37544 3.57861 3.71270 4.09268 4.37720 4.41824 4.70271 4.73494 4.82788 4.87798 4.92084 5.02036 5.09195 5.21980 5.28587 5.33934 5.35657 5.44145 5.44751 5.56729 5.58887 5.75580 5.76908 5.86504 5.92854 5.95171 6.08226 6.57142 6.74375 6.89984 7.22257 7.57157 8.08818 8.43194 8.80426 8.93156 9.48946 11.02886 Molecular weight = 287.13amu Principal moments of inertia in cm(-1) A = 0.029014 B = 0.003758 C = 0.003713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 964.814262 B = 7448.966090 C = 7540.212318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.094 4.094 3 H 0.105 0.895 4 S -0.151 6.151 5 C -0.117 4.117 6 H 0.100 0.900 7 C -0.152 4.152 8 C 0.054 3.946 9 O -0.375 6.375 10 C 0.103 3.897 11 H 0.090 0.910 12 C -0.160 4.160 13 C 0.528 3.472 14 O -0.519 6.519 15 N -0.592 5.592 16 C 0.079 3.921 17 C 0.217 3.783 18 C -0.531 4.531 19 H 0.074 0.926 20 C 0.073 3.927 21 N -0.896 5.896 22 Si 0.875 3.125 23 H -0.275 1.275 24 H -0.264 1.264 25 H -0.283 1.283 26 H 0.075 0.925 27 H 0.072 0.928 28 H 0.062 0.938 29 H 0.084 0.916 30 H 0.095 0.905 31 H 0.088 0.912 32 H 0.060 0.940 33 H 0.058 0.942 34 H 0.065 0.935 35 H 0.074 0.926 36 H 0.055 0.945 37 H 0.060 0.940 38 H 0.071 0.929 39 H 0.042 0.958 40 H 0.027 0.973 41 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.952 7.310 -15.336 21.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.227 4.227 3 H 0.123 0.877 4 S 0.078 5.922 5 C -0.246 4.246 6 H 0.118 0.882 7 C -0.192 4.192 8 C -0.024 4.024 9 O -0.295 6.295 10 C 0.045 3.955 11 H 0.108 0.892 12 C -0.218 4.218 13 C 0.312 3.688 14 O -0.394 6.394 15 N -0.324 5.324 16 C -0.065 4.065 17 C 0.097 3.903 18 C -0.569 4.569 19 H 0.093 0.907 20 C -0.130 4.130 21 N -0.534 5.534 22 Si 0.701 3.299 23 H -0.201 1.201 24 H -0.188 1.188 25 H -0.208 1.208 26 H 0.094 0.906 27 H 0.091 0.909 28 H 0.081 0.919 29 H 0.103 0.897 30 H 0.113 0.887 31 H 0.106 0.894 32 H 0.078 0.922 33 H 0.077 0.923 34 H 0.084 0.916 35 H 0.093 0.907 36 H 0.073 0.927 37 H 0.078 0.922 38 H 0.089 0.911 39 H 0.060 0.940 40 H 0.045 0.955 41 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -12.944 5.636 -15.481 20.952 hybrid contribution -1.034 0.956 1.202 1.851 sum -13.978 6.592 -14.278 21.041 Atomic orbital electron populations 1.22044 0.91478 1.04044 1.02566 1.23423 1.00221 1.03192 0.95824 0.87722 1.87523 1.74161 1.33893 0.96607 1.24998 1.03112 0.98506 0.97976 0.88167 1.23702 1.02070 0.96028 0.97382 1.23342 1.01634 0.86715 0.90663 1.88449 1.87360 1.15785 1.37899 1.22400 0.97196 0.90103 0.85835 0.89215 1.22146 0.96620 1.01054 1.01989 1.19334 0.79271 0.86855 0.83345 1.90720 1.47179 1.17156 1.84389 1.47723 1.62736 1.12690 1.09235 1.21793 0.99013 0.83386 1.02340 1.19727 0.95693 0.93649 0.81249 1.21306 0.90871 1.33708 1.11026 0.90745 1.24855 0.94762 0.95671 0.97663 1.69896 1.07237 1.44908 1.31371 0.86866 0.80388 0.80772 0.81843 1.20090 1.18824 1.20843 0.90620 0.90911 0.91867 0.89707 0.88674 0.89354 0.92229 0.92285 0.91552 0.90747 0.92666 0.92161 0.91055 0.94002 0.95487 0.92509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.58 8.82 37.16 0.33 -1.25 16 2 C -0.09 -1.37 2.33 -27.88 -0.07 -1.44 16 3 H 0.10 1.34 7.21 -51.93 -0.37 0.97 16 4 S -0.15 -2.26 19.66 -107.50 -2.11 -4.38 16 5 C -0.12 -1.24 2.82 -24.79 -0.07 -1.31 16 6 H 0.10 0.92 6.59 -51.93 -0.34 0.58 16 7 C -0.15 -1.45 6.63 -24.48 -0.16 -1.61 16 8 C 0.05 0.48 7.78 38.18 0.30 0.78 16 9 O -0.38 -4.34 11.02 -35.23 -0.39 -4.73 16 10 C 0.10 1.13 3.79 -26.01 -0.10 1.03 16 11 H 0.09 1.09 7.77 -51.93 -0.40 0.68 16 12 C -0.16 -1.45 9.44 37.16 0.35 -1.10 16 13 C 0.53 10.71 6.85 -10.99 -0.08 10.63 16 14 O -0.52 -12.94 15.62 5.55 0.09 -12.86 16 15 N -0.59 -11.95 2.86 -182.95 -0.52 -12.47 16 16 C 0.08 1.14 9.93 59.85 0.59 1.74 16 17 C 0.22 5.27 4.27 -5.19 -0.02 5.25 16 18 C -0.53 -15.28 9.94 -34.44 -0.34 -15.63 16 19 H 0.07 2.36 8.06 -52.49 -0.42 1.94 16 20 C 0.07 2.13 5.47 -17.82 -0.10 2.04 16 21 N -0.90 -27.71 13.96 55.43 0.77 -26.94 16 22 Si 0.87 21.46 27.47 -169.99 -4.67 16.79 16 23 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 24 H -0.26 -6.31 6.54 56.52 0.37 -5.94 16 25 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 26 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 27 H 0.07 0.72 6.33 -51.93 -0.33 0.39 16 28 H 0.06 0.54 6.76 -51.93 -0.35 0.19 16 29 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.09 1.04 8.03 -51.93 -0.42 0.62 16 31 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.06 0.66 4.76 -51.93 -0.25 0.41 16 38 H 0.07 0.96 7.89 -51.93 -0.41 0.55 16 39 H 0.04 1.10 6.48 -51.93 -0.34 0.76 16 40 H 0.03 0.61 7.32 -51.93 -0.38 0.23 16 41 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 LS Contribution 340.04 15.07 5.12 5.12 Total: -1.00 -34.74 340.04 -7.63 -42.38 By element: Atomic # 1 Polarization: 4.51 SS G_CDS: -6.56 Total: -2.05 kcal Atomic # 6 Polarization: -1.50 SS G_CDS: 0.64 Total: -0.87 kcal Atomic # 7 Polarization: -39.66 SS G_CDS: 0.25 Total: -39.41 kcal Atomic # 8 Polarization: -17.29 SS G_CDS: -0.30 Total: -17.59 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -4.67 Total: 16.79 kcal Atomic # 16 Polarization: -2.26 SS G_CDS: -2.11 Total: -4.38 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -34.74 -7.63 -42.38 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000163848024.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.725 kcal (2) G-P(sol) polarization free energy of solvation -34.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.375 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds