Wall clock time and date at job start Tue Mar 31 2020 05:59:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08996 * 109.46954 * 2 1 4 4 S 1.81399 * 109.46843 * 239.99933 * 2 1 3 5 5 C 1.81402 * 103.00165 * 65.00276 * 4 2 1 6 6 H 1.09000 * 110.74678 * 308.47276 * 5 4 2 7 7 C 1.55307 * 110.84941 * 72.16403 * 5 4 2 8 8 C 1.54946 * 100.94299 * 152.32367 * 7 5 4 9 9 O 1.43649 * 105.13458 * 323.56089 * 8 7 5 10 10 C 1.43236 * 109.97423 * 24.42243 * 9 8 7 11 11 H 1.08997 * 109.90555 * 238.73569 * 10 9 8 12 12 C 1.53004 * 109.82660 * 117.80146 * 10 9 8 13 13 C 1.50697 * 109.47145 * 119.99903 * 2 1 3 14 14 O 1.21290 * 119.99894 * 99.99399 * 13 2 1 15 15 N 1.34772 * 120.00198 * 280.00163 * 13 2 1 16 16 C 1.46499 * 119.99867 * 359.97438 * 15 13 2 17 17 C 1.46506 * 120.00199 * 179.97438 * 15 13 2 18 18 C 1.50696 * 109.46871 * 89.99405 * 17 15 13 19 19 H 1.07999 * 120.00319 * 0.02562 * 18 17 15 20 20 C 1.37885 * 119.99717 * 180.02562 * 18 17 15 21 21 N 1.31516 * 119.99913 * 180.02562 * 20 18 17 22 22 Si 1.86798 * 119.99766 * 0.02562 * 20 18 17 23 23 H 1.48500 * 109.47353 * 269.99586 * 22 20 18 24 24 H 1.48501 * 109.47293 * 30.00037 * 22 20 18 25 25 H 1.48504 * 109.46680 * 149.99835 * 22 20 18 26 26 H 1.09001 * 109.47624 * 179.97438 * 1 2 3 27 27 H 1.09005 * 109.47384 * 300.00256 * 1 2 3 28 28 H 1.08998 * 109.47042 * 59.99444 * 1 2 3 29 29 H 1.09003 * 111.12585 * 270.24600 * 7 5 4 30 30 H 1.09005 * 111.12447 * 34.40365 * 7 5 4 31 31 H 1.08998 * 110.31157 * 204.63969 * 8 7 5 32 32 H 1.09005 * 110.30631 * 82.47574 * 8 7 5 33 33 H 1.08995 * 109.47524 * 301.86674 * 12 10 9 34 34 H 1.08997 * 109.46815 * 61.86791 * 12 10 9 35 35 H 1.08999 * 109.46383 * 181.86489 * 12 10 9 36 36 H 1.09001 * 109.47028 * 270.00104 * 16 15 13 37 37 H 1.08994 * 109.47418 * 30.00487 * 16 15 13 38 38 H 1.09004 * 109.47077 * 150.00105 * 16 15 13 39 39 H 1.09005 * 109.46943 * 329.99725 * 17 15 13 40 40 H 1.09002 * 109.47064 * 209.99988 * 17 15 13 41 41 H 0.97001 * 119.99646 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 16 2.1346 -0.8552 -1.4811 5 6 1.5664 0.2153 -2.8309 6 1 0.5008 0.4238 -2.7359 7 6 2.3897 1.5314 -2.8766 8 6 2.2857 1.8914 -4.3801 9 8 2.3279 0.6326 -5.0709 10 6 1.8825 -0.4167 -4.2035 11 1 2.6667 -1.1656 -4.0940 12 6 0.6219 -1.0655 -4.7788 13 6 2.0323 -0.7104 1.2305 14 8 2.4064 -1.8617 1.1558 15 7 2.0659 -0.0664 2.4139 16 6 1.6145 1.3244 2.5040 17 6 2.5537 -0.7572 3.6102 18 6 4.0404 -0.5478 3.7400 19 1 4.5689 0.0413 3.0052 20 6 4.7258 -1.1083 4.7970 21 7 6.0232 -0.9251 4.9106 22 14 3.8117 -2.1277 6.0675 23 1 3.3401 -1.2449 7.1645 24 1 2.6455 -2.7874 5.4270 25 1 4.7227 -3.1616 6.6212 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 1.9331 2.3022 -2.2556 30 1 3.4254 1.3572 -2.5850 31 1 3.1280 2.5154 -4.6788 32 1 1.3446 2.4027 -4.5824 33 1 -0.1531 -0.3088 -4.9006 34 1 0.8515 -1.5096 -5.7474 35 1 0.2693 -1.8404 -4.0982 36 1 2.4569 1.9922 2.3236 37 1 0.8415 1.5047 1.7571 38 1 1.2092 1.5111 3.4986 39 1 2.3430 -1.8233 3.5255 40 1 2.0520 -0.3566 4.4911 41 1 6.5053 -1.3191 5.6544 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000163848024.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:34 Heat of formation + Delta-G solvation = -101.285764 kcal Electronic energy + Delta-G solvation = -21127.922972 eV Core-core repulsion = 17940.441840 eV Total energy + Delta-G solvation = -3187.481133 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 287.134 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.85087 -40.46800 -36.73275 -35.04597 -34.12691 -33.30994 -32.42191 -30.32828 -27.57455 -27.09842 -25.88995 -23.95675 -22.92069 -22.35951 -20.25427 -19.17409 -18.45261 -18.09229 -17.77421 -16.95820 -16.59223 -16.29529 -15.71392 -15.39642 -15.24217 -14.98964 -14.77706 -14.48156 -14.25215 -13.87836 -13.75326 -13.57325 -13.39326 -13.17365 -13.07076 -12.95765 -12.83507 -12.68693 -12.38420 -12.34807 -12.05383 -11.97858 -11.85253 -11.78713 -10.83694 -10.79663 -10.71297 -10.56084 -9.49428 -8.76503 -8.35813 -6.41592 0.34022 1.30638 1.36142 1.40743 1.46537 1.70020 2.23208 2.30078 2.82582 2.98220 3.30004 3.47407 3.63751 3.82532 3.91584 3.94951 4.08423 4.22895 4.28688 4.32518 4.53063 4.58148 4.64129 4.67993 4.69268 4.73846 4.79587 4.87091 4.90494 4.91800 5.01533 5.10041 5.15831 5.24708 5.42798 5.53973 5.97872 6.19806 6.54742 6.60097 7.16405 7.29926 8.81431 Molecular weight = 287.13amu Principal moments of inertia in cm(-1) A = 0.029014 B = 0.003758 C = 0.003713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 964.814262 B = 7448.966090 C = 7540.212318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.073 4.073 3 H 0.127 0.873 4 S -0.229 6.229 5 C -0.091 4.091 6 H 0.127 0.873 7 C -0.152 4.152 8 C 0.052 3.948 9 O -0.394 6.394 10 C 0.100 3.900 11 H 0.066 0.934 12 C -0.155 4.155 13 C 0.515 3.485 14 O -0.579 6.579 15 N -0.599 5.599 16 C 0.070 3.930 17 C 0.224 3.776 18 C -0.540 4.540 19 H 0.025 0.975 20 C 0.010 3.990 21 N -0.946 5.946 22 Si 0.950 3.050 23 H -0.247 1.247 24 H -0.255 1.255 25 H -0.283 1.283 26 H 0.061 0.939 27 H 0.091 0.909 28 H 0.098 0.902 29 H 0.111 0.889 30 H 0.073 0.927 31 H 0.097 0.903 32 H 0.084 0.916 33 H 0.074 0.926 34 H 0.066 0.934 35 H 0.074 0.926 36 H 0.051 0.949 37 H 0.105 0.895 38 H 0.087 0.913 39 H 0.019 0.981 40 H 0.056 0.944 41 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.309 9.133 -15.419 24.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.205 4.205 3 H 0.145 0.855 4 S 0.000 6.000 5 C -0.220 4.220 6 H 0.145 0.855 7 C -0.191 4.191 8 C -0.025 4.025 9 O -0.315 6.315 10 C 0.041 3.959 11 H 0.084 0.916 12 C -0.213 4.213 13 C 0.302 3.698 14 O -0.459 6.459 15 N -0.330 5.330 16 C -0.071 4.071 17 C 0.102 3.898 18 C -0.578 4.578 19 H 0.044 0.956 20 C -0.188 4.188 21 N -0.586 5.586 22 Si 0.772 3.228 23 H -0.171 1.171 24 H -0.179 1.179 25 H -0.209 1.209 26 H 0.080 0.920 27 H 0.110 0.890 28 H 0.117 0.883 29 H 0.129 0.871 30 H 0.091 0.909 31 H 0.115 0.885 32 H 0.102 0.898 33 H 0.093 0.907 34 H 0.085 0.915 35 H 0.093 0.907 36 H 0.069 0.931 37 H 0.123 0.877 38 H 0.106 0.894 39 H 0.038 0.962 40 H 0.073 0.927 41 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -16.331 7.521 -15.574 23.787 hybrid contribution 0.113 0.455 1.109 1.204 sum -16.218 7.977 -14.465 23.149 Atomic orbital electron populations 1.22078 0.88172 1.04061 1.05206 1.23292 1.02506 1.02620 0.92087 0.85544 1.87879 1.75624 1.36866 0.99664 1.24982 1.04360 0.97560 0.95134 0.85545 1.23707 1.00921 0.96012 0.98477 1.23539 1.03385 0.85885 0.89720 1.88434 1.87695 1.16833 1.38507 1.22392 0.97387 0.89847 0.86285 0.91640 1.22103 0.95949 1.01344 1.01856 1.20371 0.78111 0.86511 0.84838 1.90681 1.49670 1.20003 1.85514 1.47827 1.62263 1.14732 1.08217 1.22143 1.00097 0.79891 1.04993 1.19398 0.92951 0.93261 0.84189 1.21551 0.93432 1.32960 1.09860 0.95627 1.25890 0.95622 0.96947 1.00314 1.70059 1.09320 1.46525 1.32665 0.85682 0.78976 0.79051 0.79072 1.17140 1.17924 1.20861 0.92035 0.88999 0.88297 0.87092 0.90860 0.88480 0.89776 0.90675 0.91514 0.90706 0.93067 0.87690 0.89442 0.96248 0.92653 0.92230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.52 8.82 71.98 0.63 -1.88 16 2 C -0.07 -2.01 2.33 29.85 0.07 -1.94 16 3 H 0.13 2.86 7.21 -2.39 -0.02 2.84 16 4 S -0.23 -6.88 19.66 -56.49 -1.11 -7.99 16 5 C -0.09 -1.74 2.82 31.85 0.09 -1.65 16 6 H 0.13 1.77 6.59 -2.39 -0.02 1.76 16 7 C -0.15 -2.52 6.63 32.05 0.21 -2.30 16 8 C 0.05 0.78 7.78 72.65 0.56 1.34 16 9 O -0.39 -8.53 11.02 -148.98 -1.64 -10.18 16 10 C 0.10 2.08 3.79 31.06 0.12 2.19 16 11 H 0.07 1.66 7.77 -2.39 -0.02 1.64 16 12 C -0.15 -2.53 9.44 71.98 0.68 -1.85 16 13 C 0.51 20.96 6.85 87.66 0.60 21.56 16 14 O -0.58 -30.10 15.62 -3.06 -0.05 -30.15 16 15 N -0.60 -23.80 2.86 -851.12 -2.43 -26.23 16 16 C 0.07 1.86 9.93 127.77 1.27 3.12 16 17 C 0.22 10.88 4.27 85.63 0.37 11.24 16 18 C -0.54 -32.09 9.94 25.60 0.25 -31.83 16 19 H 0.03 1.71 8.06 -2.91 -0.02 1.69 16 20 C 0.01 0.61 5.47 84.66 0.46 1.08 16 21 N -0.95 -60.42 13.96 21.45 0.30 -60.12 16 22 Si 0.95 44.44 27.47 68.60 1.88 46.32 16 23 H -0.25 -10.45 7.11 99.48 0.71 -9.74 16 24 H -0.26 -11.51 6.54 99.48 0.65 -10.86 16 25 H -0.28 -13.16 7.11 99.48 0.71 -12.46 16 26 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 27 H 0.09 1.36 6.33 -2.38 -0.02 1.35 16 28 H 0.10 1.15 6.76 -2.39 -0.02 1.14 16 29 H 0.11 1.26 8.14 -2.39 -0.02 1.24 16 30 H 0.07 1.55 8.03 -2.38 -0.02 1.53 16 31 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16 32 H 0.08 0.89 8.14 -2.38 -0.02 0.87 16 33 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 34 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 35 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 36 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 37 H 0.10 1.80 4.76 -2.39 -0.01 1.79 16 38 H 0.09 2.04 7.89 -2.39 -0.02 2.02 16 39 H 0.02 1.03 6.48 -2.38 -0.02 1.02 16 40 H 0.06 2.37 7.32 -2.39 -0.02 2.35 16 41 H 0.27 15.92 8.31 -92.71 -0.77 15.15 16 Total: -1.00 -81.95 340.04 3.22 -78.73 By element: Atomic # 1 Polarization: 9.58 SS G_CDS: 0.95 Total: 10.53 kcal Atomic # 6 Polarization: -6.24 SS G_CDS: 5.32 Total: -0.92 kcal Atomic # 7 Polarization: -84.22 SS G_CDS: -2.13 Total: -86.35 kcal Atomic # 8 Polarization: -38.63 SS G_CDS: -1.69 Total: -40.32 kcal Atomic # 14 Polarization: 44.44 SS G_CDS: 1.88 Total: 46.32 kcal Atomic # 16 Polarization: -6.88 SS G_CDS: -1.11 Total: -7.99 kcal Total: -81.95 3.22 -78.73 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000163848024.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.557 kcal (2) G-P(sol) polarization free energy of solvation -81.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.729 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds