Wall clock time and date at job start Tue Mar 31 2020 05:59:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 S 1.81405 * 109.47264 * 239.99608 * 2 1 3 5 5 C 1.81401 * 102.99692 * 65.00017 * 4 2 1 6 6 H 1.09004 * 110.43821 * 307.55103 * 5 4 2 7 7 C 1.54818 * 110.48811 * 70.23443 * 5 4 2 8 8 C 1.54997 * 102.09298 * 139.55722 * 7 5 4 9 9 O 1.44379 * 103.48896 * 322.97555 * 8 7 5 10 10 C 1.43741 * 106.97559 * 40.06336 * 9 8 7 11 11 H 1.08996 * 110.00729 * 92.97909 * 10 9 8 12 12 C 1.53001 * 109.88013 * 214.06173 * 10 9 8 13 13 C 1.50706 * 109.47238 * 120.00151 * 2 1 3 14 14 O 1.21279 * 120.00090 * 99.99868 * 13 2 1 15 15 N 1.34774 * 119.99861 * 279.99812 * 13 2 1 16 16 C 1.46510 * 119.99811 * 359.97438 * 15 13 2 17 17 C 1.46496 * 120.00371 * 179.97438 * 15 13 2 18 18 C 1.50701 * 109.47211 * 89.99687 * 17 15 13 19 19 H 1.07996 * 119.99847 * 0.02562 * 18 17 15 20 20 C 1.37880 * 119.99862 * 179.97438 * 18 17 15 21 21 N 1.31515 * 119.99820 * 179.97438 * 20 18 17 22 22 Si 1.86801 * 120.00019 * 0.02562 * 20 18 17 23 23 H 1.48497 * 109.47117 * 89.99548 * 22 20 18 24 24 H 1.48502 * 109.46857 * 209.99708 * 22 20 18 25 25 H 1.48500 * 109.47202 * 329.99566 * 22 20 18 26 26 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 27 27 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 28 28 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 29 29 H 1.09004 * 110.90920 * 257.75692 * 7 5 4 30 30 H 1.09004 * 110.90419 * 21.35346 * 7 5 4 31 31 H 1.08996 * 110.61448 * 204.47682 * 8 7 5 32 32 H 1.08996 * 110.75231 * 81.54623 * 8 7 5 33 33 H 1.08996 * 109.47452 * 177.83384 * 12 10 9 34 34 H 1.08999 * 109.46751 * 297.82968 * 12 10 9 35 35 H 1.09001 * 109.47364 * 57.82642 * 12 10 9 36 36 H 1.09001 * 109.46758 * 89.99946 * 16 15 13 37 37 H 1.08998 * 109.46735 * 209.99632 * 16 15 13 38 38 H 1.08997 * 109.47031 * 329.99964 * 16 15 13 39 39 H 1.09002 * 109.47139 * 210.00456 * 17 15 13 40 40 H 1.09003 * 109.46604 * 329.99717 * 17 15 13 41 41 H 0.96996 * 120.00097 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 16 2.1347 -0.8552 -1.4811 5 6 1.5664 0.2152 -2.8309 6 1 0.4973 0.4070 -2.7401 7 6 2.3596 1.5447 -2.8387 8 6 2.5870 1.7782 -4.3540 9 8 2.8095 0.4483 -4.8701 10 6 1.8859 -0.4232 -4.1966 11 1 0.9720 -0.5223 -4.7822 12 6 2.5238 -1.7987 -3.9913 13 6 2.0324 -0.7105 1.2305 14 8 2.4064 -1.8617 1.1558 15 7 2.0659 -0.0665 2.4139 16 6 1.6146 1.3245 2.5040 17 6 2.5537 -0.7571 3.6102 18 6 4.0405 -0.5477 3.7401 19 1 4.5690 0.0413 3.0052 20 6 4.7257 -1.1073 4.7976 21 7 6.0232 -0.9249 4.9107 22 14 3.8113 -2.1255 6.0690 23 1 3.7983 -3.5491 5.6468 24 1 4.4928 -2.0051 7.3829 25 1 2.4158 -1.6318 6.1882 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 1.7697 2.3522 -2.4049 30 1 3.3093 1.4341 -2.3153 31 1 3.4632 2.4053 -4.5185 32 1 1.7050 2.2253 -4.8125 33 1 1.8329 -2.4419 -3.4464 34 1 2.7469 -2.2440 -4.9609 35 1 3.4461 -1.6900 -3.4206 36 1 0.5483 1.3465 2.7291 37 1 2.1637 1.8340 3.2958 38 1 1.7959 1.8275 1.5542 39 1 2.0520 -0.3565 4.4911 40 1 2.3430 -1.8232 3.5255 41 1 6.5052 -1.3182 5.6549 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000163848157.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:37 Heat of formation + Delta-G solvation = -99.457739 kcal Electronic energy + Delta-G solvation = -21271.298960 eV Core-core repulsion = 18083.897097 eV Total energy + Delta-G solvation = -3187.401863 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 287.134 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.81511 -40.39826 -36.71074 -35.01092 -34.08796 -33.37078 -32.39629 -30.34155 -27.52059 -26.96924 -25.91271 -23.90804 -23.12960 -22.24254 -20.21658 -19.16869 -18.21351 -17.91238 -17.62862 -16.87938 -16.66276 -16.52384 -15.97902 -15.64543 -15.17857 -14.97256 -14.56883 -14.31185 -14.21725 -13.71207 -13.69610 -13.53298 -13.41162 -13.20632 -13.10901 -13.08495 -12.72387 -12.67002 -12.45588 -12.14801 -12.04182 -11.95558 -11.82300 -11.76824 -10.85473 -10.74353 -10.70334 -10.48470 -9.46413 -8.64840 -8.36001 -6.41798 0.45609 1.31095 1.36098 1.43973 1.50050 1.74229 2.26491 2.29499 2.86609 2.98434 3.37069 3.52876 3.74887 3.85104 3.93419 3.99009 4.11388 4.25619 4.36539 4.38382 4.50361 4.58279 4.65288 4.67081 4.73403 4.78839 4.81247 4.90076 4.90375 4.92358 4.98139 5.07157 5.15453 5.27903 5.42690 5.54321 5.91784 6.20128 6.57290 6.60034 7.17277 7.32107 8.81207 Molecular weight = 287.13amu Principal moments of inertia in cm(-1) A = 0.026452 B = 0.003982 C = 0.003890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1058.280253 B = 7029.096811 C = 7195.647935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.092 4.092 3 H 0.123 0.877 4 S -0.213 6.213 5 C -0.097 4.097 6 H 0.127 0.873 7 C -0.152 4.152 8 C 0.048 3.952 9 O -0.396 6.396 10 C 0.099 3.901 11 H 0.103 0.897 12 C -0.160 4.160 13 C 0.515 3.485 14 O -0.580 6.580 15 N -0.601 5.601 16 C 0.074 3.926 17 C 0.225 3.775 18 C -0.538 4.538 19 H 0.026 0.974 20 C 0.011 3.989 21 N -0.946 5.946 22 Si 0.949 3.051 23 H -0.278 1.278 24 H -0.273 1.273 25 H -0.235 1.235 26 H 0.097 0.903 27 H 0.085 0.915 28 H 0.058 0.942 29 H 0.111 0.889 30 H 0.067 0.933 31 H 0.101 0.899 32 H 0.087 0.913 33 H 0.081 0.919 34 H 0.075 0.925 35 H 0.048 0.952 36 H 0.086 0.914 37 H 0.068 0.932 38 H 0.086 0.914 39 H 0.056 0.944 40 H 0.018 0.982 41 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.920 8.938 -16.145 25.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.223 4.223 3 H 0.141 0.859 4 S 0.017 5.983 5 C -0.226 4.226 6 H 0.145 0.855 7 C -0.191 4.191 8 C -0.029 4.029 9 O -0.316 6.316 10 C 0.041 3.959 11 H 0.120 0.880 12 C -0.219 4.219 13 C 0.302 3.698 14 O -0.461 6.461 15 N -0.332 5.332 16 C -0.068 4.068 17 C 0.102 3.898 18 C -0.577 4.577 19 H 0.044 0.956 20 C -0.187 4.187 21 N -0.586 5.586 22 Si 0.772 3.228 23 H -0.204 1.204 24 H -0.199 1.199 25 H -0.158 1.158 26 H 0.116 0.884 27 H 0.103 0.897 28 H 0.077 0.923 29 H 0.129 0.871 30 H 0.086 0.914 31 H 0.119 0.881 32 H 0.105 0.895 33 H 0.100 0.900 34 H 0.094 0.906 35 H 0.067 0.933 36 H 0.105 0.895 37 H 0.087 0.913 38 H 0.105 0.895 39 H 0.074 0.926 40 H 0.036 0.964 41 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -15.863 7.311 -16.232 23.845 hybrid contribution -0.018 0.499 1.141 1.246 sum -15.881 7.810 -15.091 23.258 Atomic orbital electron populations 1.21963 0.88423 1.03672 1.04919 1.23444 1.02502 1.02892 0.93464 0.85921 1.88139 1.75517 1.36066 0.98587 1.24876 1.04478 0.97566 0.95722 0.85473 1.23602 1.00808 0.96116 0.98588 1.23703 1.03244 0.84484 0.91454 1.88897 1.59953 1.19112 1.63592 1.22580 0.93478 0.90463 0.89424 0.87976 1.21828 1.01925 0.95937 1.02203 1.20415 0.77969 0.86549 0.84848 1.90668 1.49775 1.20049 1.85559 1.47854 1.62329 1.14718 1.08270 1.22081 1.00753 0.80082 1.03905 1.19365 0.92961 0.93132 0.84309 1.21546 0.93361 1.33023 1.09769 0.95596 1.25876 0.95602 0.96963 1.00270 1.70054 1.09276 1.46556 1.32675 0.85698 0.80357 0.78894 0.77888 1.20376 1.19853 1.15770 0.88447 0.89665 0.92328 0.87079 0.91434 0.88051 0.89454 0.90010 0.90620 0.93284 0.89543 0.91286 0.89523 0.92648 0.96420 0.92221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.52 9.01 71.98 0.65 -1.87 16 2 C -0.09 -2.57 2.40 29.85 0.07 -2.50 16 3 H 0.12 2.88 6.31 -2.39 -0.02 2.87 16 4 S -0.21 -6.33 16.46 -56.49 -0.93 -7.26 16 5 C -0.10 -1.80 3.33 31.59 0.11 -1.69 16 6 H 0.13 1.63 6.89 -2.38 -0.02 1.61 16 7 C -0.15 -2.48 6.68 31.90 0.21 -2.27 16 8 C 0.05 0.72 7.72 72.67 0.56 1.28 16 9 O -0.40 -8.73 11.19 -148.98 -1.67 -10.40 16 10 C 0.10 1.92 4.06 30.97 0.13 2.05 16 11 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 12 C -0.16 -3.71 8.29 71.98 0.60 -3.12 16 13 C 0.52 21.23 6.85 87.66 0.60 21.83 16 14 O -0.58 -30.38 15.62 -3.03 -0.05 -30.42 16 15 N -0.60 -24.18 2.86 -851.11 -2.43 -26.61 16 16 C 0.07 1.99 9.56 127.77 1.22 3.21 16 17 C 0.22 10.99 4.23 85.63 0.36 11.35 16 18 C -0.54 -32.17 9.94 25.60 0.25 -31.92 16 19 H 0.03 1.74 8.06 -2.91 -0.02 1.71 16 20 C 0.01 0.65 5.47 84.66 0.46 1.12 16 21 N -0.95 -60.66 13.96 21.45 0.30 -60.36 16 22 Si 0.95 44.76 27.47 68.60 1.88 46.64 16 23 H -0.28 -13.29 7.11 99.48 0.71 -12.58 16 24 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 25 H -0.23 -9.79 6.54 99.48 0.65 -9.14 16 26 H 0.10 1.20 6.77 -2.39 -0.02 1.18 16 27 H 0.08 1.38 6.94 -2.39 -0.02 1.36 16 28 H 0.06 1.33 8.14 -2.38 -0.02 1.31 16 29 H 0.11 1.17 8.14 -2.38 -0.02 1.15 16 30 H 0.07 1.48 7.83 -2.39 -0.02 1.47 16 31 H 0.10 1.37 8.14 -2.39 -0.02 1.35 16 32 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 33 H 0.08 1.90 7.38 -2.39 -0.02 1.88 16 34 H 0.07 1.55 8.14 -2.39 -0.02 1.54 16 35 H 0.05 1.41 7.16 -2.39 -0.02 1.40 16 36 H 0.09 1.69 7.66 -2.39 -0.02 1.67 16 37 H 0.07 2.01 8.07 -2.39 -0.02 1.99 16 38 H 0.09 1.84 5.94 -2.39 -0.01 1.83 16 39 H 0.06 2.44 7.13 -2.39 -0.02 2.42 16 40 H 0.02 0.94 6.85 -2.39 -0.02 0.92 16 41 H 0.27 15.99 8.31 -92.71 -0.77 15.22 16 Total: -1.00 -82.39 336.02 3.28 -79.10 By element: Atomic # 1 Polarization: 10.89 SS G_CDS: 0.95 Total: 11.85 kcal Atomic # 6 Polarization: -7.76 SS G_CDS: 5.22 Total: -2.53 kcal Atomic # 7 Polarization: -84.84 SS G_CDS: -2.13 Total: -86.97 kcal Atomic # 8 Polarization: -39.11 SS G_CDS: -1.71 Total: -40.82 kcal Atomic # 14 Polarization: 44.76 SS G_CDS: 1.88 Total: 46.64 kcal Atomic # 16 Polarization: -6.33 SS G_CDS: -0.93 Total: -7.26 kcal Total: -82.39 3.28 -79.10 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000163848157.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.353 kcal (2) G-P(sol) polarization free energy of solvation -82.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.104 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds