Wall clock time and date at job start Tue Mar 31 2020 06:24:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46504 * 109.46750 * 2 1 4 4 C 1.46507 * 119.99820 * 90.00384 * 3 2 1 5 5 C 1.50697 * 109.47006 * 89.99849 * 4 3 2 6 6 H 1.07991 * 120.00449 * 359.72165 * 5 4 3 7 7 C 1.37885 * 119.99686 * 179.97438 * 5 4 3 8 8 N 1.31514 * 120.00035 * 179.72339 * 7 5 4 9 9 Si 1.86803 * 119.99853 * 359.72191 * 7 5 4 10 10 H 1.48500 * 109.46986 * 90.00256 * 9 7 5 11 11 H 1.48496 * 109.47029 * 210.00273 * 9 7 5 12 12 H 1.48499 * 109.47352 * 330.00102 * 9 7 5 13 13 C 1.34769 * 120.00320 * 269.99737 * 3 2 1 14 14 O 1.21284 * 120.00610 * 180.02562 * 13 3 2 15 15 C 1.50708 * 119.99889 * 0.02562 * 13 3 2 16 16 S 1.81403 * 109.47180 * 180.02562 * 15 13 3 17 17 C 1.81401 * 102.99706 * 179.97438 * 16 15 13 18 18 C 1.53007 * 109.46917 * 179.97438 * 17 16 15 19 19 H 1.09005 * 110.32676 * 305.70221 * 18 17 16 20 20 C 1.54478 * 110.37281 * 183.45016 * 18 17 16 21 21 C 1.54504 * 104.06073 * 217.19125 * 20 18 17 22 22 C 1.54474 * 104.06655 * 359.97438 * 21 20 18 23 23 O 1.44426 * 110.36993 * 67.94956 * 18 17 16 24 24 H 1.09004 * 109.46791 * 299.99740 * 1 2 3 25 25 H 1.08997 * 109.47054 * 59.99761 * 1 2 3 26 26 H 1.08993 * 109.46553 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47117 * 240.00222 * 2 1 3 28 28 H 1.08996 * 109.47410 * 119.99549 * 2 1 3 29 29 H 1.08998 * 109.47049 * 329.99278 * 4 3 2 30 30 H 1.09001 * 109.46896 * 209.99549 * 4 3 2 31 31 H 0.97000 * 119.99706 * 179.97438 * 8 7 5 32 32 H 1.09004 * 109.46543 * 299.99193 * 15 13 3 33 33 H 1.08996 * 109.46850 * 59.99429 * 15 13 3 34 34 H 1.08997 * 109.47167 * 299.99806 * 17 16 15 35 35 H 1.08997 * 109.47079 * 59.99936 * 17 16 15 36 36 H 1.09003 * 110.50865 * 335.83871 * 20 18 17 37 37 H 1.09003 * 110.51066 * 98.54362 * 20 18 17 38 38 H 1.09005 * 110.51173 * 118.64817 * 21 20 18 39 39 H 1.09001 * 110.50543 * 241.21672 * 21 20 18 40 40 H 1.08994 * 110.37512 * 142.81022 * 22 21 20 41 41 H 1.09003 * 110.37562 * 265.03760 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2625 2.0719 1.2688 5 6 3.6858 1.8351 1.7037 6 1 4.3414 1.2270 1.0983 7 6 4.1494 2.3906 2.8775 8 7 5.3899 2.1795 3.2599 9 14 3.0155 3.4430 3.9245 10 1 2.3048 2.5818 4.9036 11 1 3.8158 4.4615 4.6506 12 1 2.0244 4.1222 3.0517 13 6 2.2429 2.0166 -1.1671 14 8 2.6476 3.1600 -1.1672 15 6 1.9913 1.3064 -2.4723 16 16 2.3851 2.4175 -3.8511 17 6 2.0258 1.4009 -5.3098 18 6 2.3115 2.2087 -6.5774 19 1 1.7643 3.1513 -6.5571 20 6 1.9306 1.3926 -7.8325 21 6 3.0227 1.7569 -8.8628 22 6 3.9339 2.7505 -8.1087 23 8 3.7289 2.4528 -6.7091 24 1 -0.3633 0.5138 0.8901 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3632 -1.0276 -0.0005 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5137 0.8900 29 1 1.5817 1.6878 2.0284 30 1 2.0955 3.1411 1.1385 31 1 5.7161 2.5706 4.0854 32 1 2.6214 0.4188 -2.5302 33 1 0.9433 1.0125 -2.5298 34 1 2.6548 0.5108 -5.2962 35 1 0.9769 1.1047 -5.2968 36 1 1.9519 0.3248 -7.6146 37 1 0.9472 1.6894 -8.1971 38 1 3.5840 0.8692 -9.1545 39 1 2.5789 2.2317 -9.7379 40 1 4.9770 2.5911 -8.3817 41 1 3.6381 3.7769 -8.3262 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000171489379.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:07 Heat of formation + Delta-G solvation = -105.851574 kcal Electronic energy + Delta-G solvation = -20472.799123 eV Core-core repulsion = 17285.120002 eV Total energy + Delta-G solvation = -3187.679121 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 287.134 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.75690 -40.29610 -37.06974 -34.91035 -33.31012 -32.46242 -32.21550 -31.17542 -29.03461 -27.02583 -24.52795 -24.12370 -23.02674 -21.92901 -20.09038 -19.13345 -18.14448 -17.89167 -17.44706 -16.80919 -16.69764 -16.48328 -16.29861 -15.88103 -14.90508 -14.77542 -14.69676 -14.58852 -14.33858 -14.14860 -13.69492 -13.57742 -13.51215 -13.32506 -13.13055 -12.62727 -12.60866 -12.39565 -12.12920 -12.06735 -11.95473 -11.88938 -11.77701 -11.49849 -10.95197 -10.83721 -10.81343 -10.64648 -9.49232 -8.64465 -8.35683 -6.41094 0.45884 1.29919 1.35500 1.46224 1.62348 1.67547 2.26923 2.30202 2.95729 2.98316 3.52992 3.60675 3.77408 3.99944 4.00960 4.04888 4.12713 4.16422 4.26251 4.39470 4.42746 4.54939 4.60210 4.60995 4.74640 4.83900 4.87757 4.89352 4.97641 4.97938 5.00298 5.12071 5.19642 5.37903 5.44948 5.60102 5.91555 6.21048 6.58602 6.61218 7.17956 7.32874 8.81548 Molecular weight = 287.13amu Principal moments of inertia in cm(-1) A = 0.026470 B = 0.003332 C = 0.003107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1057.560721 B = 8402.129242 C = 9008.444670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.095 3.905 3 N -0.595 5.595 4 C 0.227 3.773 5 C -0.538 4.538 6 H 0.027 0.973 7 C 0.010 3.990 8 N -0.946 5.946 9 Si 0.949 3.051 10 H -0.248 1.248 11 H -0.282 1.282 12 H -0.257 1.257 13 C 0.511 3.489 14 O -0.579 6.579 15 C -0.101 4.101 16 S -0.254 6.254 17 C -0.083 4.083 18 C 0.085 3.915 19 H 0.071 0.929 20 C -0.137 4.137 21 C -0.149 4.149 22 C 0.031 3.969 23 O -0.397 6.397 24 H 0.047 0.953 25 H 0.062 0.938 26 H 0.097 0.903 27 H 0.096 0.904 28 H 0.075 0.925 29 H 0.051 0.949 30 H 0.018 0.982 31 H 0.269 0.731 32 H 0.124 0.876 33 H 0.143 0.857 34 H 0.093 0.907 35 H 0.124 0.876 36 H 0.088 0.912 37 H 0.100 0.900 38 H 0.082 0.918 39 H 0.096 0.904 40 H 0.095 0.905 41 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.290 -7.502 -22.912 28.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.027 4.027 3 N -0.327 5.327 4 C 0.105 3.895 5 C -0.577 4.577 6 H 0.046 0.954 7 C -0.188 4.188 8 N -0.586 5.586 9 Si 0.771 3.229 10 H -0.172 1.172 11 H -0.207 1.207 12 H -0.181 1.181 13 C 0.298 3.702 14 O -0.459 6.459 15 C -0.252 4.252 16 S -0.027 6.027 17 C -0.231 4.231 18 C 0.026 3.974 19 H 0.089 0.911 20 C -0.177 4.177 21 C -0.186 4.186 22 C -0.046 4.046 23 O -0.317 6.317 24 H 0.066 0.934 25 H 0.081 0.919 26 H 0.115 0.885 27 H 0.114 0.886 28 H 0.093 0.907 29 H 0.069 0.931 30 H 0.036 0.964 31 H 0.078 0.922 32 H 0.142 0.858 33 H 0.161 0.839 34 H 0.112 0.888 35 H 0.143 0.857 36 H 0.106 0.894 37 H 0.118 0.882 38 H 0.101 0.899 39 H 0.114 0.886 40 H 0.113 0.887 41 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -13.436 -5.871 -22.513 26.867 hybrid contribution 0.000 -0.531 0.810 0.968 sum -13.435 -6.402 -21.704 26.316 Atomic orbital electron populations 1.22167 0.93611 1.03841 1.02237 1.21850 0.95890 0.80779 1.04158 1.47986 1.64015 1.15321 1.05368 1.19308 0.94800 0.93083 0.82347 1.21560 0.97197 1.32079 1.06844 0.95444 1.25876 0.96791 0.97148 0.98942 1.70054 1.17578 1.46485 1.24438 0.85697 0.79098 0.79109 0.78985 1.17163 1.20741 1.18105 1.20372 0.77532 0.86431 0.85853 1.90686 1.47173 1.20483 1.87574 1.23469 1.08193 1.01300 0.92219 1.88149 1.89720 1.24592 1.00285 1.23648 1.06311 1.00530 0.92590 1.22808 0.82868 0.97926 0.93818 0.91141 1.22985 1.00539 1.01317 0.92814 1.22935 0.96741 1.00071 0.98896 1.23636 1.01611 0.98877 0.80452 1.89295 1.24291 1.91037 1.27109 0.93365 0.91919 0.88452 0.88554 0.90692 0.93093 0.96407 0.92218 0.85784 0.83934 0.88799 0.85747 0.89354 0.88154 0.89950 0.88589 0.88651 0.91966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.33 10.24 71.98 0.74 -2.59 16 2 C 0.10 2.71 5.93 86.38 0.51 3.22 16 3 N -0.60 -24.55 2.46 -826.13 -2.03 -26.58 16 4 C 0.23 11.36 4.23 85.63 0.36 11.72 16 5 C -0.54 -32.59 9.94 25.60 0.25 -32.33 16 6 H 0.03 1.86 8.06 -2.92 -0.02 1.83 16 7 C 0.01 0.63 5.47 84.66 0.46 1.09 16 8 N -0.95 -61.14 13.96 21.45 0.30 -60.84 16 9 Si 0.95 45.44 27.47 68.60 1.88 47.33 16 10 H -0.25 -10.72 7.11 99.48 0.71 -10.01 16 11 H -0.28 -13.35 7.11 99.48 0.71 -12.65 16 12 H -0.26 -11.96 6.54 99.48 0.65 -11.31 16 13 C 0.51 21.73 7.69 87.66 0.67 22.40 16 14 O -0.58 -31.30 15.44 -3.04 -0.05 -31.35 16 15 C -0.10 -2.94 4.98 71.24 0.35 -2.59 16 16 S -0.25 -8.19 20.76 -56.49 -1.17 -9.36 16 17 C -0.08 -1.61 5.56 71.98 0.40 -1.21 16 18 C 0.08 1.61 3.25 31.10 0.10 1.71 16 19 H 0.07 1.42 8.14 -2.38 -0.02 1.40 16 20 C -0.14 -1.51 6.63 31.61 0.21 -1.30 16 21 C -0.15 -1.59 7.09 31.61 0.22 -1.36 16 22 C 0.03 0.51 7.63 72.48 0.55 1.07 16 23 O -0.40 -10.11 11.23 -148.98 -1.67 -11.78 16 24 H 0.05 1.14 8.14 -2.38 -0.02 1.12 16 25 H 0.06 1.17 7.22 -2.39 -0.02 1.15 16 26 H 0.10 1.39 8.14 -2.39 -0.02 1.37 16 27 H 0.10 2.15 6.44 -2.39 -0.02 2.14 16 28 H 0.07 2.31 8.07 -2.39 -0.02 2.29 16 29 H 0.05 2.29 7.51 -2.39 -0.02 2.27 16 30 H 0.02 0.98 6.47 -2.39 -0.02 0.96 16 31 H 0.27 16.11 8.31 -92.71 -0.77 15.34 16 32 H 0.12 3.10 7.40 -2.39 -0.02 3.08 16 33 H 0.14 2.92 7.18 -2.39 -0.02 2.91 16 34 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 35 H 0.12 1.59 8.14 -2.39 -0.02 1.57 16 36 H 0.09 0.82 7.87 -2.39 -0.02 0.80 16 37 H 0.10 0.72 8.14 -2.39 -0.02 0.70 16 38 H 0.08 0.78 8.14 -2.38 -0.02 0.76 16 39 H 0.10 0.66 8.14 -2.39 -0.02 0.64 16 40 H 0.10 1.44 8.14 -2.39 -0.02 1.42 16 41 H 0.06 0.96 8.14 -2.39 -0.02 0.95 16 Total: -1.00 -85.36 346.66 3.05 -82.31 By element: Atomic # 1 Polarization: 9.51 SS G_CDS: 0.94 Total: 10.45 kcal Atomic # 6 Polarization: -5.02 SS G_CDS: 4.85 Total: -0.17 kcal Atomic # 7 Polarization: -85.69 SS G_CDS: -1.73 Total: -87.42 kcal Atomic # 8 Polarization: -41.41 SS G_CDS: -1.72 Total: -43.13 kcal Atomic # 14 Polarization: 45.44 SS G_CDS: 1.88 Total: 47.33 kcal Atomic # 16 Polarization: -8.19 SS G_CDS: -1.17 Total: -9.36 kcal Total: -85.36 3.05 -82.31 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171489379.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.539 kcal (2) G-P(sol) polarization free energy of solvation -85.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.313 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds