Wall clock time and date at job start Tue Mar 31 2020 06:24:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46499 * 109.47276 * 2 1 4 4 C 1.46499 * 120.00136 * 269.99459 * 3 2 1 5 5 C 1.50697 * 109.47293 * 270.00491 * 4 3 2 6 6 H 1.07997 * 120.00010 * 359.97438 * 5 4 3 7 7 C 1.37875 * 120.00091 * 180.02562 * 5 4 3 8 8 N 1.31517 * 120.00149 * 359.97438 * 7 5 4 9 9 Si 1.86797 * 120.00247 * 179.97438 * 7 5 4 10 10 H 1.48498 * 109.47351 * 59.99383 * 9 7 5 11 11 H 1.48496 * 109.47133 * 179.97438 * 9 7 5 12 12 H 1.48505 * 109.46935 * 299.99671 * 9 7 5 13 13 C 1.34784 * 119.99971 * 89.99654 * 3 2 1 14 14 O 1.21283 * 119.99649 * 179.97438 * 13 3 2 15 15 C 1.50697 * 119.99774 * 359.72768 * 13 3 2 16 16 S 1.81404 * 109.46666 * 180.02562 * 15 13 3 17 17 C 1.81407 * 102.99806 * 179.97438 * 16 15 13 18 18 C 1.53003 * 109.46895 * 179.97438 * 17 16 15 19 19 H 1.09000 * 109.86826 * 58.99502 * 18 17 16 20 20 C 1.54099 * 109.87667 * 179.97438 * 18 17 16 21 21 C 1.54807 * 104.18798 * 121.45416 * 20 18 17 22 22 C 1.54995 * 102.09337 * 20.88010 * 21 20 18 23 23 O 1.43739 * 109.87764 * 297.82963 * 18 17 16 24 24 H 1.09007 * 109.46853 * 59.99785 * 1 2 3 25 25 H 1.08996 * 109.47549 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47074 * 300.00425 * 1 2 3 27 27 H 1.08998 * 109.47074 * 239.99575 * 2 1 3 28 28 H 1.09008 * 109.46412 * 119.99581 * 2 1 3 29 29 H 1.08997 * 109.46865 * 30.00228 * 4 3 2 30 30 H 1.08998 * 109.47058 * 149.99741 * 4 3 2 31 31 H 0.96995 * 120.00744 * 180.02562 * 8 7 5 32 32 H 1.09001 * 109.46809 * 299.99238 * 15 13 3 33 33 H 1.08993 * 109.47525 * 59.99679 * 15 13 3 34 34 H 1.09005 * 109.46945 * 299.99533 * 17 16 15 35 35 H 1.09000 * 109.46980 * 59.99830 * 17 16 15 36 36 H 1.08994 * 110.48906 * 240.13424 * 20 18 17 37 37 H 1.09005 * 110.49139 * 2.77485 * 20 18 17 38 38 H 1.08999 * 110.90940 * 139.07973 * 21 20 18 39 39 H 1.09000 * 110.90944 * 262.64591 * 21 20 18 40 40 H 1.09005 * 110.61500 * 81.47593 * 22 21 20 41 41 H 1.08991 * 110.62082 * 204.47801 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2627 2.0718 -1.2687 5 6 3.6859 1.8349 -1.7037 6 1 4.3429 1.2307 -1.0957 7 6 4.1496 2.3903 -2.8773 8 7 3.3497 3.1265 -3.6175 9 14 5.9140 2.0972 -3.4162 10 1 6.1419 0.6407 -3.5940 11 1 6.1615 2.7972 -4.7022 12 1 6.8412 2.6205 -2.3808 13 6 2.2429 2.0166 1.1673 14 8 2.6477 3.1599 1.1672 15 6 1.9858 1.3082 2.4723 16 16 2.3795 2.4194 3.8511 17 6 2.0118 1.4057 5.3099 18 6 2.2979 2.2135 6.5774 19 1 1.6884 3.1172 6.5862 20 6 1.9879 1.3609 7.8231 21 6 3.3292 1.3147 8.5946 22 6 4.0744 2.5485 8.0246 23 8 3.6918 2.5598 6.6321 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8899 27 1 1.8933 -0.5139 -0.8899 28 1 1.8932 -0.5138 0.8901 29 1 1.5819 1.6877 -2.0283 30 1 2.0957 3.1410 -1.1384 31 1 3.6757 3.5169 -4.4434 32 1 0.9365 1.0186 2.5279 33 1 2.6121 0.4182 2.5322 34 1 0.9618 1.1135 5.2940 35 1 2.6376 0.5133 5.2992 36 1 1.2159 1.8361 8.4282 37 1 1.6808 0.3565 7.5313 38 1 3.1651 1.4206 9.6669 39 1 3.8728 0.3957 8.3752 40 1 3.7424 3.4604 8.5210 41 1 5.1527 2.4260 8.1255 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000171489383.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:10 Heat of formation + Delta-G solvation = -84.982352 kcal Electronic energy + Delta-G solvation = -20480.479833 eV Core-core repulsion = 17293.705669 eV Total energy + Delta-G solvation = -3186.774164 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 287.134 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.61668 -38.96266 -35.29883 -32.83125 -32.60462 -31.71608 -30.23737 -29.78219 -26.72018 -26.17941 -23.04791 -22.67168 -22.36408 -21.24606 -18.49469 -16.97676 -16.58983 -16.41224 -16.26937 -15.80608 -15.60206 -15.10557 -14.81561 -14.18201 -13.91532 -13.42705 -13.41494 -13.28254 -13.08142 -12.87005 -12.64517 -12.02386 -12.00027 -11.92559 -11.60501 -11.43526 -11.26354 -11.11006 -11.00940 -10.89534 -10.74044 -10.50075 -10.10932 -9.96444 -9.63483 -9.59067 -8.98561 -8.40289 -7.69149 -7.35057 -6.01530 -4.06316 1.64691 2.74804 3.34324 3.36626 3.39273 3.44618 3.64184 3.94377 4.21803 4.39866 4.47828 4.59420 4.74113 4.89349 4.99870 5.02525 5.21241 5.23887 5.24960 5.33001 5.33868 5.38530 5.46278 5.48235 5.56164 5.61178 5.68385 5.75303 5.77923 5.99870 6.20895 6.45716 6.69738 7.04980 7.45765 7.54366 7.94542 8.25573 8.38017 8.90943 9.07044 9.58675 11.06604 Molecular weight = 287.13amu Principal moments of inertia in cm(-1) A = 0.021957 B = 0.003433 C = 0.003132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1274.917373 B = 8153.221956 C = 8937.956848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.106 3.894 3 N -0.594 5.594 4 C 0.248 3.752 5 C -0.528 4.528 6 H 0.057 0.943 7 C 0.062 3.938 8 N -0.895 5.895 9 Si 0.898 3.102 10 H -0.277 1.277 11 H -0.286 1.286 12 H -0.275 1.275 13 C 0.521 3.479 14 O -0.519 6.519 15 C -0.129 4.129 16 S -0.161 6.161 17 C -0.114 4.114 18 C 0.095 3.905 19 H 0.078 0.922 20 C -0.148 4.148 21 C -0.155 4.155 22 C 0.043 3.957 23 O -0.357 6.357 24 H 0.062 0.938 25 H 0.060 0.940 26 H 0.049 0.951 27 H 0.084 0.916 28 H 0.062 0.938 29 H 0.033 0.967 30 H 0.044 0.956 31 H 0.264 0.736 32 H 0.100 0.900 33 H 0.101 0.899 34 H 0.089 0.911 35 H 0.084 0.916 36 H 0.079 0.921 37 H 0.079 0.921 38 H 0.079 0.921 39 H 0.077 0.923 40 H 0.060 0.940 41 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.993 -8.482 22.113 24.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.019 4.019 3 N -0.327 5.327 4 C 0.129 3.871 5 C -0.566 4.566 6 H 0.075 0.925 7 C -0.140 4.140 8 N -0.534 5.534 9 Si 0.726 3.274 10 H -0.203 1.203 11 H -0.212 1.212 12 H -0.201 1.201 13 C 0.306 3.694 14 O -0.395 6.395 15 C -0.280 4.280 16 S 0.066 5.934 17 C -0.262 4.262 18 C 0.036 3.964 19 H 0.095 0.905 20 C -0.187 4.187 21 C -0.193 4.193 22 C -0.034 4.034 23 O -0.276 6.276 24 H 0.081 0.919 25 H 0.079 0.921 26 H 0.068 0.932 27 H 0.102 0.898 28 H 0.081 0.919 29 H 0.051 0.949 30 H 0.062 0.938 31 H 0.073 0.927 32 H 0.118 0.882 33 H 0.120 0.880 34 H 0.107 0.893 35 H 0.103 0.897 36 H 0.097 0.903 37 H 0.098 0.902 38 H 0.098 0.902 39 H 0.096 0.904 40 H 0.078 0.922 41 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -5.280 -6.667 21.651 23.261 hybrid contribution 0.293 -1.716 -0.201 1.752 sum -4.987 -8.383 21.450 23.564 Atomic orbital electron populations 1.22228 0.96760 1.01405 1.02388 1.21431 0.93527 0.84216 1.02688 1.48194 1.63853 1.13254 1.07364 1.19289 0.96328 0.93681 0.77792 1.21401 0.96902 1.32040 1.06295 0.92489 1.24928 0.97876 0.94868 0.96372 1.69921 1.35757 1.33374 1.14373 0.86553 0.84827 0.78205 0.77829 1.20278 1.21176 1.20079 1.19383 0.79201 0.86820 0.84036 1.90721 1.44834 1.17517 1.86446 1.23686 1.05304 1.02358 0.96671 1.87818 1.88446 1.20997 0.96164 1.23723 1.04097 1.01826 0.96575 1.22377 0.84512 0.96854 0.92619 0.90451 1.23015 0.98351 1.01272 0.96068 1.23139 0.96065 0.99729 1.00375 1.23577 1.00439 0.96856 0.82560 1.89087 1.23907 1.90501 1.24094 0.91882 0.92142 0.93157 0.89756 0.91919 0.94879 0.93795 0.92657 0.88189 0.88031 0.89268 0.89740 0.90275 0.90193 0.90234 0.90431 0.92160 0.88876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.24 10.24 37.16 0.38 -1.86 16 2 C 0.11 1.69 5.93 -4.04 -0.02 1.66 16 3 N -0.59 -12.77 2.46 -175.06 -0.43 -13.20 16 4 C 0.25 6.59 5.16 -5.20 -0.03 6.56 16 5 C -0.53 -15.25 9.39 -34.44 -0.32 -15.57 16 6 H 0.06 1.65 7.81 -52.49 -0.41 1.24 16 7 C 0.06 1.79 5.46 -17.82 -0.10 1.69 16 8 N -0.90 -27.00 13.29 55.43 0.74 -26.26 16 9 Si 0.90 22.28 29.54 -169.99 -5.02 17.26 16 10 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 11 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 12 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 13 C 0.52 11.34 7.69 -10.98 -0.08 11.25 16 14 O -0.52 -13.84 15.44 5.56 0.09 -13.76 16 15 C -0.13 -2.04 4.98 36.00 0.18 -1.87 16 16 S -0.16 -2.67 20.60 -107.50 -2.21 -4.88 16 17 C -0.11 -1.26 5.44 37.16 0.20 -1.06 16 18 C 0.10 1.00 3.45 -26.16 -0.09 0.91 16 19 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 20 C -0.15 -1.04 6.64 -25.21 -0.17 -1.21 16 21 C -0.16 -1.03 7.15 -24.73 -0.18 -1.21 16 22 C 0.04 0.37 7.72 38.21 0.29 0.66 16 23 O -0.36 -4.59 10.87 -35.23 -0.38 -4.97 16 24 H 0.06 0.93 8.14 -51.92 -0.42 0.51 16 25 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 26 H 0.05 0.63 7.20 -51.93 -0.37 0.26 16 27 H 0.08 1.40 8.07 -51.93 -0.42 0.98 16 28 H 0.06 0.83 6.44 -51.92 -0.33 0.49 16 29 H 0.03 0.88 8.07 -51.93 -0.42 0.46 16 30 H 0.04 1.32 7.42 -51.93 -0.39 0.94 16 31 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 32 H 0.10 1.30 7.17 -51.92 -0.37 0.93 16 33 H 0.10 1.42 7.39 -51.93 -0.38 1.04 16 34 H 0.09 0.79 8.14 -51.92 -0.42 0.37 16 35 H 0.08 0.89 8.14 -51.92 -0.42 0.47 16 36 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.08 0.49 7.70 -51.93 -0.40 0.09 16 38 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 39 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.09 0.72 8.14 -51.93 -0.42 0.29 16 LS Contribution 349.78 15.07 5.27 5.27 Total: -1.00 -35.16 349.78 -8.75 -43.91 By element: Atomic # 1 Polarization: 3.53 SS G_CDS: -6.86 Total: -3.33 kcal Atomic # 6 Polarization: -0.09 SS G_CDS: 0.07 Total: -0.03 kcal Atomic # 7 Polarization: -39.77 SS G_CDS: 0.31 Total: -39.47 kcal Atomic # 8 Polarization: -18.43 SS G_CDS: -0.30 Total: -18.73 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -5.02 Total: 17.26 kcal Atomic # 16 Polarization: -2.67 SS G_CDS: -2.21 Total: -4.88 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -35.16 -8.75 -43.91 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171489383.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.076 kcal (2) G-P(sol) polarization free energy of solvation -35.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.907 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds