Wall clock time and date at job start Tue Mar 31 2020 06:24:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46499 * 109.47276 * 2 1 4 4 C 1.46499 * 120.00136 * 269.99459 * 3 2 1 5 5 C 1.50697 * 109.47293 * 270.00491 * 4 3 2 6 6 H 1.07997 * 120.00010 * 359.97438 * 5 4 3 7 7 C 1.37875 * 120.00091 * 180.02562 * 5 4 3 8 8 N 1.31517 * 120.00149 * 359.97438 * 7 5 4 9 9 Si 1.86797 * 120.00247 * 179.97438 * 7 5 4 10 10 H 1.48498 * 109.47351 * 59.99383 * 9 7 5 11 11 H 1.48496 * 109.47133 * 179.97438 * 9 7 5 12 12 H 1.48505 * 109.46935 * 299.99671 * 9 7 5 13 13 C 1.34784 * 119.99971 * 89.99654 * 3 2 1 14 14 O 1.21283 * 119.99649 * 179.97438 * 13 3 2 15 15 C 1.50697 * 119.99774 * 359.72768 * 13 3 2 16 16 S 1.81404 * 109.46666 * 180.02562 * 15 13 3 17 17 C 1.81407 * 102.99806 * 179.97438 * 16 15 13 18 18 C 1.53003 * 109.46895 * 179.97438 * 17 16 15 19 19 H 1.09000 * 109.86826 * 58.99502 * 18 17 16 20 20 C 1.54099 * 109.87667 * 179.97438 * 18 17 16 21 21 C 1.54807 * 104.18798 * 121.45416 * 20 18 17 22 22 C 1.54995 * 102.09337 * 20.88010 * 21 20 18 23 23 O 1.43739 * 109.87764 * 297.82963 * 18 17 16 24 24 H 1.09007 * 109.46853 * 59.99785 * 1 2 3 25 25 H 1.08996 * 109.47549 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47074 * 300.00425 * 1 2 3 27 27 H 1.08998 * 109.47074 * 239.99575 * 2 1 3 28 28 H 1.09008 * 109.46412 * 119.99581 * 2 1 3 29 29 H 1.08997 * 109.46865 * 30.00228 * 4 3 2 30 30 H 1.08998 * 109.47058 * 149.99741 * 4 3 2 31 31 H 0.96995 * 120.00744 * 180.02562 * 8 7 5 32 32 H 1.09001 * 109.46809 * 299.99238 * 15 13 3 33 33 H 1.08993 * 109.47525 * 59.99679 * 15 13 3 34 34 H 1.09005 * 109.46945 * 299.99533 * 17 16 15 35 35 H 1.09000 * 109.46980 * 59.99830 * 17 16 15 36 36 H 1.08994 * 110.48906 * 240.13424 * 20 18 17 37 37 H 1.09005 * 110.49139 * 2.77485 * 20 18 17 38 38 H 1.08999 * 110.90940 * 139.07973 * 21 20 18 39 39 H 1.09000 * 110.90944 * 262.64591 * 21 20 18 40 40 H 1.09005 * 110.61500 * 81.47593 * 22 21 20 41 41 H 1.08991 * 110.62082 * 204.47801 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2627 2.0718 -1.2687 5 6 3.6859 1.8349 -1.7037 6 1 4.3429 1.2307 -1.0957 7 6 4.1496 2.3903 -2.8773 8 7 3.3497 3.1265 -3.6175 9 14 5.9140 2.0972 -3.4162 10 1 6.1419 0.6407 -3.5940 11 1 6.1615 2.7972 -4.7022 12 1 6.8412 2.6205 -2.3808 13 6 2.2429 2.0166 1.1673 14 8 2.6477 3.1599 1.1672 15 6 1.9858 1.3082 2.4723 16 16 2.3795 2.4194 3.8511 17 6 2.0118 1.4057 5.3099 18 6 2.2979 2.2135 6.5774 19 1 1.6884 3.1172 6.5862 20 6 1.9879 1.3609 7.8231 21 6 3.3292 1.3147 8.5946 22 6 4.0744 2.5485 8.0246 23 8 3.6918 2.5598 6.6321 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8899 27 1 1.8933 -0.5139 -0.8899 28 1 1.8932 -0.5138 0.8901 29 1 1.5819 1.6877 -2.0283 30 1 2.0957 3.1410 -1.1384 31 1 3.6757 3.5169 -4.4434 32 1 0.9365 1.0186 2.5279 33 1 2.6121 0.4182 2.5322 34 1 0.9618 1.1135 5.2940 35 1 2.6376 0.5133 5.2992 36 1 1.2159 1.8361 8.4282 37 1 1.6808 0.3565 7.5313 38 1 3.1651 1.4206 9.6669 39 1 3.8728 0.3957 8.3752 40 1 3.7424 3.4604 8.5210 41 1 5.1527 2.4260 8.1255 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000171489383.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:09 Heat of formation + Delta-G solvation = -108.359866 kcal Electronic energy + Delta-G solvation = -20481.493558 eV Core-core repulsion = 17293.705669 eV Total energy + Delta-G solvation = -3187.787889 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 287.134 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.69252 -40.32061 -37.01649 -34.96270 -33.34733 -32.39550 -31.89028 -31.15300 -28.61519 -26.96878 -24.91806 -24.13300 -23.06821 -21.93592 -20.12076 -18.66095 -18.06665 -17.88048 -17.41310 -16.90561 -16.65061 -16.46711 -16.24043 -15.91541 -14.81967 -14.77128 -14.52372 -14.48153 -14.31054 -14.00172 -13.69268 -13.58203 -13.40154 -13.23964 -13.05673 -12.67230 -12.58207 -12.53731 -12.17759 -12.04455 -11.94679 -11.89974 -11.75440 -11.55160 -10.90490 -10.73958 -10.65556 -10.57150 -9.50354 -8.62028 -8.23918 -6.39003 0.49110 1.35038 1.40275 1.47232 1.66518 1.72801 2.28085 2.42952 2.97449 3.05582 3.56326 3.63847 3.74660 3.98876 4.02240 4.06390 4.14234 4.15450 4.27846 4.41412 4.43251 4.59171 4.61842 4.65074 4.84310 4.91022 4.91815 4.96636 4.97488 5.03164 5.11082 5.19499 5.22824 5.37964 5.55121 5.82007 6.00343 6.04203 6.64845 6.72727 7.24771 7.40789 8.83176 Molecular weight = 287.13amu Principal moments of inertia in cm(-1) A = 0.021957 B = 0.003433 C = 0.003132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1274.917373 B = 8153.221956 C = 8937.956848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.097 3.903 3 N -0.598 5.598 4 C 0.264 3.736 5 C -0.546 4.546 6 H 0.053 0.947 7 C 0.008 3.992 8 N -0.928 5.928 9 Si 0.968 3.032 10 H -0.258 1.258 11 H -0.277 1.277 12 H -0.280 1.280 13 C 0.508 3.492 14 O -0.582 6.582 15 C -0.101 4.101 16 S -0.253 6.253 17 C -0.087 4.087 18 C 0.087 3.913 19 H 0.068 0.932 20 C -0.138 4.138 21 C -0.148 4.148 22 C 0.032 3.968 23 O -0.397 6.397 24 H 0.038 0.962 25 H 0.098 0.902 26 H 0.060 0.940 27 H 0.074 0.926 28 H 0.101 0.899 29 H 0.026 0.974 30 H -0.006 1.006 31 H 0.268 0.732 32 H 0.137 0.863 33 H 0.128 0.872 34 H 0.120 0.880 35 H 0.094 0.906 36 H 0.096 0.904 37 H 0.095 0.905 38 H 0.101 0.899 39 H 0.078 0.922 40 H 0.066 0.934 41 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.377 -11.553 24.208 27.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.025 4.025 3 N -0.330 5.330 4 C 0.143 3.857 5 C -0.584 4.584 6 H 0.071 0.929 7 C -0.191 4.191 8 N -0.568 5.568 9 Si 0.792 3.208 10 H -0.182 1.182 11 H -0.202 1.202 12 H -0.206 1.206 13 C 0.296 3.704 14 O -0.463 6.463 15 C -0.252 4.252 16 S -0.027 6.027 17 C -0.235 4.235 18 C 0.028 3.972 19 H 0.085 0.915 20 C -0.178 4.178 21 C -0.186 4.186 22 C -0.044 4.044 23 O -0.317 6.317 24 H 0.057 0.943 25 H 0.117 0.883 26 H 0.079 0.921 27 H 0.093 0.907 28 H 0.119 0.881 29 H 0.044 0.956 30 H 0.012 0.988 31 H 0.077 0.923 32 H 0.155 0.845 33 H 0.146 0.854 34 H 0.138 0.862 35 H 0.113 0.887 36 H 0.114 0.886 37 H 0.114 0.886 38 H 0.120 0.880 39 H 0.097 0.903 40 H 0.084 0.916 41 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -5.694 -9.798 23.759 26.323 hybrid contribution 0.383 -0.738 -0.787 1.145 sum -5.311 -10.536 22.972 25.825 Atomic orbital electron populations 1.22163 0.94325 1.03682 1.01755 1.21814 0.95504 0.81019 1.04140 1.48215 1.63746 1.15258 1.05763 1.18713 0.95405 0.91448 0.80178 1.21687 0.97899 1.32244 1.06610 0.92902 1.25869 1.02484 0.94384 0.96396 1.70042 1.37869 1.34073 1.14815 0.85468 0.78874 0.79159 0.77326 1.18195 1.20178 1.20557 1.20396 0.77781 0.86401 0.85848 1.90688 1.47494 1.20483 1.87599 1.23469 1.07968 1.01438 0.92290 1.88218 1.89317 1.24916 1.00218 1.23815 1.06047 1.00657 0.92971 1.22555 0.83586 0.97249 0.93845 0.91456 1.23004 0.98927 1.01476 0.94365 1.23128 0.95431 0.98507 1.01502 1.23797 1.01075 0.98396 0.81182 1.89053 1.25241 1.90901 1.26540 0.94281 0.88295 0.92091 0.90703 0.88058 0.95589 0.98751 0.92339 0.84467 0.85376 0.86203 0.88695 0.88575 0.88613 0.88030 0.90304 0.91611 0.88632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.84 10.24 71.98 0.74 -3.10 16 2 C 0.10 2.92 5.93 86.38 0.51 3.43 16 3 N -0.60 -26.03 2.46 -826.16 -2.03 -28.06 16 4 C 0.26 14.71 5.16 85.63 0.44 15.15 16 5 C -0.55 -32.48 9.39 25.60 0.24 -32.24 16 6 H 0.05 3.11 7.81 -2.91 -0.02 3.08 16 7 C 0.01 0.46 5.46 84.65 0.46 0.92 16 8 N -0.93 -57.58 13.29 21.45 0.28 -57.30 16 9 Si 0.97 46.16 29.54 68.60 2.03 48.19 16 10 H -0.26 -11.42 7.11 99.48 0.71 -10.71 16 11 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 12 H -0.28 -13.48 7.11 99.48 0.71 -12.78 16 13 C 0.51 22.43 7.69 87.65 0.67 23.11 16 14 O -0.58 -32.74 15.44 -3.04 -0.05 -32.79 16 15 C -0.10 -3.01 4.98 71.24 0.35 -2.66 16 16 S -0.25 -8.34 20.60 -56.49 -1.16 -9.50 16 17 C -0.09 -1.70 5.44 71.98 0.39 -1.31 16 18 C 0.09 1.66 3.45 30.97 0.11 1.76 16 19 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 20 C -0.14 -1.47 6.64 31.58 0.21 -1.26 16 21 C -0.15 -1.54 7.15 31.89 0.23 -1.31 16 22 C 0.03 0.51 7.72 72.66 0.56 1.07 16 23 O -0.40 -10.05 10.87 -148.98 -1.62 -11.67 16 24 H 0.04 1.11 8.14 -2.38 -0.02 1.09 16 25 H 0.10 1.64 8.14 -2.39 -0.02 1.62 16 26 H 0.06 1.33 7.20 -2.39 -0.02 1.31 16 27 H 0.07 2.39 8.07 -2.39 -0.02 2.37 16 28 H 0.10 2.27 6.44 -2.38 -0.02 2.25 16 29 H 0.03 1.46 8.07 -2.39 -0.02 1.44 16 30 H -0.01 -0.37 7.42 -2.39 -0.02 -0.38 16 31 H 0.27 15.56 8.31 -92.71 -0.77 14.79 16 32 H 0.14 3.04 7.17 -2.39 -0.02 3.02 16 33 H 0.13 3.13 7.39 -2.39 -0.02 3.11 16 34 H 0.12 1.62 8.14 -2.39 -0.02 1.60 16 35 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 36 H 0.10 0.72 8.14 -2.39 -0.02 0.70 16 37 H 0.10 0.74 7.70 -2.38 -0.02 0.73 16 38 H 0.10 0.63 8.14 -2.39 -0.02 0.61 16 39 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 40 H 0.07 0.95 8.14 -2.38 -0.02 0.93 16 41 H 0.10 1.42 8.14 -2.39 -0.02 1.40 16 Total: -1.00 -82.91 349.78 3.36 -79.55 By element: Atomic # 1 Polarization: 7.03 SS G_CDS: 0.99 Total: 8.02 kcal Atomic # 6 Polarization: -1.36 SS G_CDS: 4.92 Total: 3.56 kcal Atomic # 7 Polarization: -83.61 SS G_CDS: -1.74 Total: -85.36 kcal Atomic # 8 Polarization: -42.79 SS G_CDS: -1.67 Total: -44.46 kcal Atomic # 14 Polarization: 46.16 SS G_CDS: 2.03 Total: 48.19 kcal Atomic # 16 Polarization: -8.34 SS G_CDS: -1.16 Total: -9.50 kcal Total: -82.91 3.36 -79.55 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171489383.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.809 kcal (2) G-P(sol) polarization free energy of solvation -82.913 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.551 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds