Wall clock time and date at job start Tue Mar 31 2020 06:04:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08997 * 109.46978 * 2 1 4 4 C 1.50691 * 109.46937 * 239.99700 * 2 1 3 5 5 O 1.21286 * 119.99951 * 253.98014 * 4 2 1 6 6 N 1.34777 * 119.99912 * 73.98311 * 4 2 1 7 7 C 1.46493 * 120.00131 * 3.67378 * 6 4 2 8 8 C 1.46508 * 119.99848 * 183.67412 * 6 4 2 9 9 C 1.50694 * 109.47228 * 89.99854 * 8 6 4 10 10 H 1.08003 * 120.00080 * 359.97438 * 9 8 6 11 11 C 1.37870 * 120.00180 * 179.97438 * 9 8 6 12 12 N 1.31518 * 120.00165 * 0.02562 * 11 9 8 13 13 Si 1.86800 * 120.00343 * 179.97438 * 11 9 8 14 14 H 1.48501 * 109.47209 * 60.00283 * 13 11 9 15 15 H 1.48499 * 109.47352 * 180.02562 * 13 11 9 16 16 H 1.48497 * 109.47273 * 300.00210 * 13 11 9 17 17 C 1.50708 * 109.46858 * 119.99697 * 2 1 3 18 18 C 1.33990 * 124.91810 * 239.99886 * 17 2 1 19 19 C 1.46791 * 106.18124 * 179.97438 * 18 17 2 20 20 C 1.39405 * 134.37409 * 179.97438 * 19 18 17 21 21 C 1.36733 * 119.71824 * 179.97438 * 20 19 18 22 22 C 1.38738 * 120.41854 * 359.97438 * 21 20 19 23 23 C 1.37848 * 120.68638 * 0.03326 * 22 21 20 24 24 C 1.38941 * 119.81760 * 359.96798 * 23 22 21 25 25 O 1.34446 * 124.91921 * 59.69488 * 17 2 1 26 26 H 1.09007 * 109.46950 * 296.15871 * 1 2 3 27 27 H 1.08997 * 109.46904 * 56.15348 * 1 2 3 28 28 H 1.08994 * 109.47544 * 176.15613 * 1 2 3 29 29 H 1.09001 * 109.47481 * 84.65898 * 7 6 4 30 30 H 1.09003 * 109.47455 * 204.65997 * 7 6 4 31 31 H 1.09007 * 109.47212 * 324.65558 * 7 6 4 32 32 H 1.09002 * 109.46906 * 210.00330 * 8 6 4 33 33 H 1.08996 * 109.46908 * 329.99870 * 8 6 4 34 34 H 0.96996 * 120.00480 * 180.02562 * 12 11 9 35 35 H 1.07992 * 126.91377 * 359.96520 * 18 17 2 36 36 H 1.08006 * 120.13699 * 359.97438 * 20 19 18 37 37 H 1.08004 * 119.78710 * 180.02562 * 21 20 19 38 38 H 1.07997 * 119.65952 * 180.02562 * 22 21 20 39 39 H 1.07996 * 120.09444 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2304 5 8 2.5077 -1.8223 -1.1370 6 7 1.9533 -0.1102 -2.4345 7 6 1.4539 1.2631 -2.5371 8 6 2.3668 -0.8313 -3.6410 9 6 1.1856 -1.5716 -4.2135 10 1 0.2232 -1.5113 -3.7271 11 6 1.3335 -2.3257 -5.3581 12 7 2.5056 -2.3995 -5.9501 13 14 -0.1305 -3.2439 -6.0674 14 1 -1.2025 -2.2757 -6.4118 15 1 0.2887 -3.9747 -7.2903 16 1 -0.6414 -4.2117 -5.0637 17 6 2.0323 -0.7104 1.2306 18 6 2.8059 -0.1564 2.1740 19 6 3.0464 -1.2044 3.1732 20 6 3.7582 -1.2651 4.3704 21 6 3.7828 -2.4299 5.0860 22 6 3.1040 -3.5500 4.6283 23 6 2.3951 -3.5090 3.4468 24 6 2.3571 -2.3352 2.7043 25 8 1.7644 -1.9901 1.5437 26 1 -0.3633 0.4531 0.9225 27 1 -0.3633 0.5724 -0.8535 28 1 -0.3634 -1.0253 -0.0689 29 1 2.2704 1.9614 -2.3533 30 1 1.0513 1.4297 -3.5362 31 1 0.6681 1.4202 -1.7980 32 1 2.7426 -0.1213 -4.3777 33 1 3.1531 -1.5423 -3.3876 34 1 2.6096 -2.9298 -6.7556 35 1 3.1778 0.8573 2.1949 36 1 4.2878 -0.3956 4.7310 37 1 4.3335 -2.4781 6.0138 38 1 3.1314 -4.4636 5.2035 39 1 1.8705 -4.3867 3.0993 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000176167835.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:12 Heat of formation + Delta-G solvation = -3.995612 kcal Electronic energy + Delta-G solvation = -22269.461484 eV Core-core repulsion = 18950.755217 eV Total energy + Delta-G solvation = -3318.706266 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 287.131 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.36885 -39.22741 -37.78359 -34.87239 -34.14452 -32.62611 -32.13159 -30.36038 -28.73961 -27.71498 -26.05579 -24.51680 -23.23754 -22.63476 -21.58166 -20.87303 -18.65009 -17.27609 -16.78276 -16.51827 -16.30956 -16.00669 -15.51563 -14.94821 -14.57670 -14.34155 -14.02407 -13.83347 -13.49050 -13.04526 -12.94384 -12.56054 -12.25406 -12.21992 -12.07032 -11.96771 -11.90292 -11.47067 -11.29922 -11.18364 -10.89968 -10.84796 -10.56907 -10.16588 -10.06884 -9.66181 -8.95758 -8.55922 -8.44214 -8.06598 -7.68205 -6.05213 -4.10462 0.94030 1.40373 2.40734 2.81218 3.30554 3.32408 3.36012 3.40829 3.73782 3.88153 4.34540 4.43767 4.68929 4.89017 4.95695 5.00133 5.09382 5.15631 5.24575 5.28869 5.36967 5.43580 5.47610 5.65738 5.74661 5.83510 5.86620 5.89323 6.10596 6.21108 6.26858 6.32926 6.41394 6.47295 6.70220 7.01670 7.34148 7.42662 7.50108 7.90682 8.21443 8.34380 8.86763 9.02765 9.54633 11.02868 Molecular weight = 287.13amu Principal moments of inertia in cm(-1) A = 0.023055 B = 0.003926 C = 0.003645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1214.172234 B = 7129.706901 C = 7678.915110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.042 4.042 3 H 0.120 0.880 4 C 0.508 3.492 5 O -0.526 6.526 6 N -0.599 5.599 7 C 0.073 3.927 8 C 0.245 3.755 9 C -0.529 4.529 10 H 0.057 0.943 11 C 0.062 3.938 12 N -0.894 5.894 13 Si 0.898 3.102 14 H -0.276 1.276 15 H -0.286 1.286 16 H -0.276 1.276 17 C 0.082 3.918 18 C -0.221 4.221 19 C -0.127 4.127 20 C -0.075 4.075 21 C -0.141 4.141 22 C -0.102 4.102 23 C -0.104 4.104 24 C 0.055 3.945 25 O -0.168 6.168 26 H 0.067 0.933 27 H 0.079 0.921 28 H 0.069 0.931 29 H 0.045 0.955 30 H 0.078 0.922 31 H 0.062 0.938 32 H 0.033 0.967 33 H 0.044 0.956 34 H 0.264 0.736 35 H 0.157 0.843 36 H 0.124 0.876 37 H 0.125 0.875 38 H 0.132 0.868 39 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.092 7.002 18.943 20.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.064 4.064 3 H 0.137 0.863 4 C 0.293 3.707 5 O -0.402 6.402 6 N -0.332 5.332 7 C -0.070 4.070 8 C 0.127 3.873 9 C -0.567 4.567 10 H 0.075 0.925 11 C -0.141 4.141 12 N -0.533 5.533 13 Si 0.726 3.274 14 H -0.202 1.202 15 H -0.211 1.211 16 H -0.202 1.202 17 C 0.033 3.967 18 C -0.240 4.240 19 C -0.128 4.128 20 C -0.093 4.093 21 C -0.159 4.159 22 C -0.120 4.120 23 C -0.122 4.122 24 C 0.007 3.993 25 O -0.068 6.068 26 H 0.086 0.914 27 H 0.098 0.902 28 H 0.089 0.911 29 H 0.064 0.936 30 H 0.096 0.904 31 H 0.080 0.920 32 H 0.051 0.949 33 H 0.062 0.938 34 H 0.074 0.926 35 H 0.174 0.826 36 H 0.142 0.858 37 H 0.143 0.857 38 H 0.150 0.850 39 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -0.896 6.137 18.624 19.629 hybrid contribution -0.658 -0.345 -0.532 0.914 sum -1.554 5.792 18.092 19.060 Atomic orbital electron populations 1.21852 0.91248 1.04173 1.02983 1.20181 0.98563 0.99023 0.88604 0.86265 1.19946 0.80182 0.86576 0.83980 1.90727 1.44690 1.19255 1.85573 1.48100 1.63101 1.14081 1.07870 1.21851 0.98306 0.83405 1.03483 1.19319 0.96380 0.92011 0.79639 1.21392 0.95990 1.29767 1.09599 0.92459 1.24936 0.96093 0.96310 0.96727 1.69922 1.22726 1.40768 1.19905 0.86555 0.82500 0.79993 0.78366 1.20208 1.21143 1.20165 1.21674 0.97433 0.81771 0.95826 1.22113 1.05866 1.00411 0.95575 1.19925 1.01824 0.93825 0.97183 1.20231 0.97973 0.98337 0.92804 1.20709 1.01508 0.93061 1.00630 1.20861 0.97100 0.98837 0.95164 1.19981 1.02586 0.94996 0.94659 1.19699 0.96951 0.96091 0.86578 1.84069 1.60918 1.27421 1.34401 0.91377 0.90230 0.91150 0.93632 0.90353 0.91968 0.94861 0.93774 0.92624 0.82568 0.85791 0.85657 0.85047 0.85088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.92 8.91 37.16 0.33 -1.59 16 2 C -0.04 -0.65 2.28 -92.92 -0.21 -0.86 16 3 H 0.12 1.39 7.42 -51.93 -0.39 1.01 16 4 C 0.51 10.75 6.89 -10.99 -0.08 10.68 16 5 O -0.53 -13.84 15.25 -6.96 -0.11 -13.94 16 6 N -0.60 -12.60 2.86 -182.96 -0.52 -13.12 16 7 C 0.07 1.10 9.85 59.84 0.59 1.69 16 8 C 0.25 6.45 5.16 -5.19 -0.03 6.42 16 9 C -0.53 -15.01 9.39 -34.45 -0.32 -15.33 16 10 H 0.06 1.61 7.81 -52.48 -0.41 1.20 16 11 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 12 N -0.89 -26.73 13.29 55.43 0.74 -25.99 16 13 Si 0.90 21.92 29.54 -169.99 -5.02 16.90 16 14 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 15 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 16 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 17 C 0.08 1.36 5.26 -35.80 -0.19 1.17 16 18 C -0.22 -3.18 10.97 -37.62 -0.41 -3.60 16 19 C -0.13 -1.89 6.40 -105.16 -0.67 -2.56 16 20 C -0.08 -0.90 10.05 -39.69 -0.40 -1.30 16 21 C -0.14 -1.48 9.98 -39.94 -0.40 -1.88 16 22 C -0.10 -1.11 10.01 -39.54 -0.40 -1.50 16 23 C -0.10 -1.41 10.07 -39.46 -0.40 -1.81 16 24 C 0.05 0.91 7.42 -38.47 -0.29 0.62 16 25 O -0.17 -3.17 10.03 -8.60 -0.09 -3.26 16 26 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 27 H 0.08 0.95 5.81 -51.93 -0.30 0.65 16 28 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 29 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.08 1.21 8.03 -51.93 -0.42 0.80 16 31 H 0.06 0.74 4.56 -51.92 -0.24 0.51 16 32 H 0.03 0.88 8.07 -51.93 -0.42 0.46 16 33 H 0.04 1.32 7.37 -51.93 -0.38 0.94 16 34 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 35 H 0.16 1.73 8.06 -52.49 -0.42 1.31 16 36 H 0.12 1.16 8.06 -52.48 -0.42 0.74 16 37 H 0.13 0.94 8.06 -52.48 -0.42 0.51 16 38 H 0.13 1.02 8.06 -52.49 -0.42 0.60 16 39 H 0.13 1.58 8.06 -52.49 -0.42 1.16 16 LS Contribution 332.48 15.07 5.01 5.01 Total: -1.00 -35.40 332.48 -8.02 -43.42 By element: Atomic # 1 Polarization: 4.22 SS G_CDS: -5.07 Total: -0.85 kcal Atomic # 6 Polarization: -5.20 SS G_CDS: -2.96 Total: -8.17 kcal Atomic # 7 Polarization: -39.33 SS G_CDS: 0.21 Total: -39.12 kcal Atomic # 8 Polarization: -17.01 SS G_CDS: -0.19 Total: -17.20 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -35.40 -8.02 -43.42 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000176167835.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.427 kcal (2) G-P(sol) polarization free energy of solvation -35.399 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.423 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds