Wall clock time and date at job start Tue Mar 31 2020 06:04:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08997 * 109.46978 * 2 1 4 4 C 1.50691 * 109.46937 * 239.99700 * 2 1 3 5 5 O 1.21286 * 119.99951 * 253.98014 * 4 2 1 6 6 N 1.34777 * 119.99912 * 73.98311 * 4 2 1 7 7 C 1.46493 * 120.00131 * 3.67378 * 6 4 2 8 8 C 1.46508 * 119.99848 * 183.67412 * 6 4 2 9 9 C 1.50694 * 109.47228 * 89.99854 * 8 6 4 10 10 H 1.08003 * 120.00080 * 359.97438 * 9 8 6 11 11 C 1.37870 * 120.00180 * 179.97438 * 9 8 6 12 12 N 1.31518 * 120.00165 * 0.02562 * 11 9 8 13 13 Si 1.86800 * 120.00343 * 179.97438 * 11 9 8 14 14 H 1.48501 * 109.47209 * 60.00283 * 13 11 9 15 15 H 1.48499 * 109.47352 * 180.02562 * 13 11 9 16 16 H 1.48497 * 109.47273 * 300.00210 * 13 11 9 17 17 C 1.50708 * 109.46858 * 119.99697 * 2 1 3 18 18 C 1.33990 * 124.91810 * 239.99886 * 17 2 1 19 19 C 1.46791 * 106.18124 * 179.97438 * 18 17 2 20 20 C 1.39405 * 134.37409 * 179.97438 * 19 18 17 21 21 C 1.36733 * 119.71824 * 179.97438 * 20 19 18 22 22 C 1.38738 * 120.41854 * 359.97438 * 21 20 19 23 23 C 1.37848 * 120.68638 * 0.03326 * 22 21 20 24 24 C 1.38941 * 119.81760 * 359.96798 * 23 22 21 25 25 O 1.34446 * 124.91921 * 59.69488 * 17 2 1 26 26 H 1.09007 * 109.46950 * 296.15871 * 1 2 3 27 27 H 1.08997 * 109.46904 * 56.15348 * 1 2 3 28 28 H 1.08994 * 109.47544 * 176.15613 * 1 2 3 29 29 H 1.09001 * 109.47481 * 84.65898 * 7 6 4 30 30 H 1.09003 * 109.47455 * 204.65997 * 7 6 4 31 31 H 1.09007 * 109.47212 * 324.65558 * 7 6 4 32 32 H 1.09002 * 109.46906 * 210.00330 * 8 6 4 33 33 H 1.08996 * 109.46908 * 329.99870 * 8 6 4 34 34 H 0.96996 * 120.00480 * 180.02562 * 12 11 9 35 35 H 1.07992 * 126.91377 * 359.96520 * 18 17 2 36 36 H 1.08006 * 120.13699 * 359.97438 * 20 19 18 37 37 H 1.08004 * 119.78710 * 180.02562 * 21 20 19 38 38 H 1.07997 * 119.65952 * 180.02562 * 22 21 20 39 39 H 1.07996 * 120.09444 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2304 5 8 2.5077 -1.8223 -1.1370 6 7 1.9533 -0.1102 -2.4345 7 6 1.4539 1.2631 -2.5371 8 6 2.3668 -0.8313 -3.6410 9 6 1.1856 -1.5716 -4.2135 10 1 0.2232 -1.5113 -3.7271 11 6 1.3335 -2.3257 -5.3581 12 7 2.5056 -2.3995 -5.9501 13 14 -0.1305 -3.2439 -6.0674 14 1 -1.2025 -2.2757 -6.4118 15 1 0.2887 -3.9747 -7.2903 16 1 -0.6414 -4.2117 -5.0637 17 6 2.0323 -0.7104 1.2306 18 6 2.8059 -0.1564 2.1740 19 6 3.0464 -1.2044 3.1732 20 6 3.7582 -1.2651 4.3704 21 6 3.7828 -2.4299 5.0860 22 6 3.1040 -3.5500 4.6283 23 6 2.3951 -3.5090 3.4468 24 6 2.3571 -2.3352 2.7043 25 8 1.7644 -1.9901 1.5437 26 1 -0.3633 0.4531 0.9225 27 1 -0.3633 0.5724 -0.8535 28 1 -0.3634 -1.0253 -0.0689 29 1 2.2704 1.9614 -2.3533 30 1 1.0513 1.4297 -3.5362 31 1 0.6681 1.4202 -1.7980 32 1 2.7426 -0.1213 -4.3777 33 1 3.1531 -1.5423 -3.3876 34 1 2.6096 -2.9298 -6.7556 35 1 3.1778 0.8573 2.1949 36 1 4.2878 -0.3956 4.7310 37 1 4.3335 -2.4781 6.0138 38 1 3.1314 -4.4636 5.2035 39 1 1.8705 -4.3867 3.0993 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000176167835.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:12 Heat of formation + Delta-G solvation = -26.034777 kcal Electronic energy + Delta-G solvation = -22270.417174 eV Core-core repulsion = 18950.755217 eV Total energy + Delta-G solvation = -3319.661956 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 287.131 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -43.47165 -40.81938 -38.77585 -36.65552 -35.52129 -34.54605 -33.29498 -31.31993 -30.05662 -29.37581 -27.50700 -25.95822 -24.79592 -23.78361 -22.70467 -22.07504 -20.14785 -18.69803 -18.32095 -18.10913 -17.70796 -17.17237 -16.81782 -16.49806 -16.18857 -15.84112 -15.10844 -15.01348 -14.66862 -14.44802 -14.23073 -14.00621 -13.66684 -13.55439 -13.33863 -13.18249 -13.12274 -12.94699 -12.86277 -12.62136 -12.56027 -12.34317 -12.16717 -11.83278 -11.73315 -11.12355 -10.66631 -10.60598 -9.56602 -9.45197 -9.10585 -8.24764 -6.40036 -0.05348 0.42265 1.30965 1.34243 1.39134 1.46111 1.67200 1.84445 2.29760 2.42552 2.78911 3.04759 3.25066 3.60027 3.74867 3.94680 3.96844 4.11003 4.15426 4.28904 4.33104 4.42121 4.54236 4.67002 4.68949 4.77107 4.79046 4.93065 4.95058 5.00021 5.18079 5.21232 5.29590 5.36345 5.50284 5.50676 5.52965 5.80698 5.81887 6.03103 6.26918 6.65520 6.72619 7.24384 7.41047 8.82291 Molecular weight = 287.13amu Principal moments of inertia in cm(-1) A = 0.023055 B = 0.003926 C = 0.003645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1214.172234 B = 7129.706901 C = 7678.915110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.026 4.026 3 H 0.166 0.834 4 C 0.497 3.503 5 O -0.593 6.593 6 N -0.605 5.605 7 C 0.065 3.935 8 C 0.259 3.741 9 C -0.545 4.545 10 H 0.055 0.945 11 C 0.007 3.993 12 N -0.929 5.929 13 Si 0.968 3.032 14 H -0.256 1.256 15 H -0.278 1.278 16 H -0.281 1.281 17 C 0.041 3.959 18 C -0.203 4.203 19 C -0.151 4.151 20 C -0.077 4.077 21 C -0.136 4.136 22 C -0.089 4.089 23 C -0.133 4.133 24 C 0.014 3.986 25 O -0.209 6.209 26 H 0.102 0.898 27 H 0.095 0.905 28 H 0.036 0.964 29 H 0.078 0.922 30 H 0.071 0.929 31 H 0.100 0.900 32 H 0.028 0.972 33 H -0.007 1.007 34 H 0.267 0.733 35 H 0.192 0.808 36 H 0.154 0.846 37 H 0.166 0.834 38 H 0.166 0.834 39 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.706 8.894 21.294 23.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.047 4.047 3 H 0.183 0.817 4 C 0.285 3.715 5 O -0.474 6.474 6 N -0.335 5.335 7 C -0.076 4.076 8 C 0.138 3.862 9 C -0.584 4.584 10 H 0.073 0.927 11 C -0.192 4.192 12 N -0.568 5.568 13 Si 0.792 3.208 14 H -0.180 1.180 15 H -0.203 1.203 16 H -0.206 1.206 17 C -0.007 4.007 18 C -0.221 4.221 19 C -0.152 4.152 20 C -0.094 4.094 21 C -0.154 4.154 22 C -0.107 4.107 23 C -0.151 4.151 24 C -0.033 4.033 25 O -0.111 6.111 26 H 0.120 0.880 27 H 0.114 0.886 28 H 0.055 0.945 29 H 0.096 0.904 30 H 0.090 0.910 31 H 0.118 0.882 32 H 0.046 0.954 33 H 0.011 0.989 34 H 0.076 0.924 35 H 0.210 0.790 36 H 0.172 0.828 37 H 0.183 0.817 38 H 0.184 0.816 39 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -1.532 8.097 20.986 22.546 hybrid contribution -0.366 -0.973 -1.130 1.535 sum -1.898 7.124 19.856 21.181 Atomic orbital electron populations 1.21871 0.89710 1.02704 1.05425 1.20218 0.99617 1.00014 0.84823 0.81710 1.21072 0.78837 0.86087 0.85481 1.90684 1.47539 1.22450 1.86734 1.48115 1.62921 1.16100 1.06408 1.22220 1.00555 0.80323 1.04512 1.18769 0.94575 0.91297 0.81574 1.21691 0.96364 1.30385 1.09915 0.92663 1.25881 0.99109 0.97087 0.97142 1.70047 1.24863 1.41543 1.20386 0.85471 0.79196 0.78735 0.77441 1.18012 1.20264 1.20645 1.22017 0.99811 0.81697 0.97203 1.22578 1.03639 1.01594 0.94335 1.20307 1.02812 0.93441 0.98639 1.20684 0.97111 1.00068 0.91579 1.21235 1.00542 0.92062 1.01535 1.21355 0.95001 1.00509 0.93789 1.20333 1.04194 0.94599 0.96014 1.20326 0.98337 0.97961 0.86723 1.83995 1.62265 1.28963 1.35861 0.87973 0.88636 0.94513 0.90381 0.90997 0.88210 0.95418 0.98933 0.92368 0.79048 0.82797 0.81688 0.81615 0.85116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.51 8.91 71.98 0.64 -2.87 16 2 C -0.03 -0.77 2.28 -12.28 -0.03 -0.80 16 3 H 0.17 3.25 7.42 -2.39 -0.02 3.24 16 4 C 0.50 21.73 6.89 87.65 0.60 22.34 16 5 O -0.59 -33.51 15.25 8.92 0.14 -33.37 16 6 N -0.60 -25.88 2.86 -851.13 -2.43 -28.32 16 7 C 0.07 1.83 9.85 127.77 1.26 3.09 16 8 C 0.26 14.33 5.16 85.63 0.44 14.78 16 9 C -0.55 -32.02 9.39 25.60 0.24 -31.78 16 10 H 0.06 3.18 7.81 -2.91 -0.02 3.16 16 11 C 0.01 0.40 5.46 84.65 0.46 0.86 16 12 N -0.93 -57.30 13.29 21.45 0.28 -57.02 16 13 Si 0.97 45.65 29.54 68.60 2.03 47.68 16 14 H -0.26 -11.17 7.11 99.48 0.71 -10.46 16 15 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 16 H -0.28 -13.37 7.11 99.48 0.71 -12.67 16 17 C 0.04 1.36 5.26 24.72 0.13 1.49 16 18 C -0.20 -5.58 10.97 23.54 0.26 -5.32 16 19 C -0.15 -4.38 6.40 -20.21 -0.13 -4.51 16 20 C -0.08 -1.62 10.05 22.20 0.22 -1.40 16 21 C -0.14 -2.39 9.98 22.04 0.22 -2.17 16 22 C -0.09 -1.75 10.01 22.30 0.22 -1.53 16 23 C -0.13 -3.71 10.07 22.35 0.23 -3.48 16 24 C 0.01 0.47 7.42 22.99 0.17 0.64 16 25 O -0.21 -8.40 10.03 3.06 0.03 -8.37 16 26 H 0.10 1.88 8.14 -2.38 -0.02 1.86 16 27 H 0.10 2.02 5.81 -2.39 -0.01 2.01 16 28 H 0.04 1.16 8.14 -2.39 -0.02 1.14 16 29 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 30 H 0.07 2.13 8.03 -2.39 -0.02 2.11 16 31 H 0.10 2.03 4.56 -2.38 -0.01 2.02 16 32 H 0.03 1.53 8.07 -2.39 -0.02 1.51 16 33 H -0.01 -0.48 7.37 -2.39 -0.02 -0.50 16 34 H 0.27 15.48 8.31 -92.71 -0.77 14.71 16 35 H 0.19 3.58 8.06 -2.91 -0.02 3.56 16 36 H 0.15 2.24 8.06 -2.91 -0.02 2.21 16 37 H 0.17 1.59 8.06 -2.91 -0.02 1.57 16 38 H 0.17 2.03 8.06 -2.91 -0.02 2.01 16 39 H 0.13 3.41 8.06 -2.91 -0.02 3.39 16 Total: -1.00 -85.47 332.48 6.04 -79.43 By element: Atomic # 1 Polarization: 9.58 SS G_CDS: 1.05 Total: 10.63 kcal Atomic # 6 Polarization: -15.60 SS G_CDS: 4.94 Total: -10.66 kcal Atomic # 7 Polarization: -83.19 SS G_CDS: -2.15 Total: -85.34 kcal Atomic # 8 Polarization: -41.90 SS G_CDS: 0.17 Total: -41.74 kcal Atomic # 14 Polarization: 45.65 SS G_CDS: 2.03 Total: 47.68 kcal Total: -85.47 6.04 -79.43 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000176167835.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.394 kcal (2) G-P(sol) polarization free energy of solvation -85.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.428 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds