Wall clock time and date at job start Tue Mar 31 2020 06:15:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52987 * 1 3 3 H 1.08999 * 109.47352 * 2 1 4 4 C 1.50702 * 109.47561 * 120.00555 * 2 1 3 5 5 O 1.21273 * 120.00560 * 119.99883 * 4 2 1 6 6 N 1.34782 * 119.99485 * 299.99900 * 4 2 1 7 7 C 1.46498 * 119.99736 * 179.97438 * 6 4 2 8 8 H 1.09003 * 109.47331 * 325.00046 * 7 6 4 9 9 C 1.52998 * 109.47251 * 85.00410 * 7 6 4 10 10 C 1.50705 * 109.46924 * 205.00296 * 7 6 4 11 11 H 1.07997 * 120.00180 * 359.97438 * 10 7 6 12 12 C 1.37874 * 119.99913 * 180.02562 * 10 7 6 13 13 N 1.31514 * 120.00275 * 179.97438 * 12 10 7 14 14 Si 1.86803 * 119.99977 * 359.97438 * 12 10 7 15 15 H 1.48502 * 109.47232 * 90.00507 * 14 12 10 16 16 H 1.48502 * 109.47053 * 210.00305 * 14 12 10 17 17 H 1.48497 * 109.47096 * 330.00287 * 14 12 10 18 18 C 1.50705 * 109.47327 * 240.00377 * 2 1 3 19 19 C 1.33997 * 124.92353 * 119.99736 * 18 2 1 20 20 C 1.46785 * 106.18379 * 179.97438 * 19 18 2 21 21 C 1.39402 * 134.36782 * 179.97438 * 20 19 18 22 22 C 1.36738 * 119.71519 * 179.97438 * 21 20 19 23 23 C 1.38742 * 120.41803 * 0.02562 * 22 21 20 24 24 C 1.37855 * 120.68496 * 0.02562 * 23 22 21 25 25 C 1.38938 * 119.81787 * 359.97438 * 24 23 22 26 26 O 1.34451 * 124.92103 * 299.97730 * 18 2 1 27 27 H 1.09002 * 109.47431 * 59.99642 * 1 2 3 28 28 H 1.08999 * 109.47352 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47411 * 299.99610 * 1 2 3 30 30 H 0.96994 * 120.00023 * 359.97438 * 6 4 2 31 31 H 1.08993 * 109.47095 * 59.99645 * 9 7 6 32 32 H 1.09004 * 109.47024 * 180.02562 * 9 7 6 33 33 H 1.09004 * 109.46763 * 299.99256 * 9 7 6 34 34 H 0.96995 * 120.00309 * 179.97438 * 13 12 10 35 35 H 1.07996 * 126.90761 * 0.02562 * 19 18 2 36 36 H 1.08001 * 120.14630 * 0.02892 * 21 20 19 37 37 H 1.08002 * 119.79100 * 180.02562 * 22 21 20 38 38 H 1.08004 * 119.66016 * 179.97438 * 23 22 21 39 39 H 1.07999 * 120.08968 * 179.70288 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0276 0.0000 4 6 2.0323 -0.7105 1.2304 5 8 2.7296 -1.6965 1.1191 6 7 1.7067 -0.2501 2.4545 7 6 2.1947 -0.9410 3.6506 8 1 2.2310 -2.0139 3.4611 9 6 3.5973 -0.4362 3.9948 10 6 1.2647 -0.6659 4.8042 11 1 0.3973 -0.0387 4.6608 12 6 1.5219 -1.2140 6.0429 13 7 0.7107 -0.9736 7.0497 14 14 3.0227 -2.2983 6.2911 15 1 4.1780 -1.4588 6.6983 16 1 2.7403 -3.2993 7.3510 17 1 3.3428 -2.9986 5.0214 18 6 2.0323 -0.7103 -1.2305 19 6 2.8059 -0.1563 -2.1740 20 6 3.0475 -1.2047 -3.1726 21 6 3.7590 -1.2652 -4.3698 22 6 3.7860 -2.4308 -5.0841 23 6 3.1096 -3.5518 -4.6249 24 6 2.3999 -3.5106 -3.4439 25 6 2.3597 -2.3361 -2.7027 26 8 1.7695 -1.9920 -1.5406 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.1494 0.5387 2.5436 31 1 3.5610 0.6366 4.1843 32 1 3.9606 -0.9507 4.8845 33 1 4.2700 -0.6353 3.1604 34 1 0.8914 -1.3595 7.9210 35 1 3.1776 0.8574 -2.1950 36 1 4.2875 -0.3954 -4.7312 37 1 4.3372 -2.4792 -6.0116 38 1 3.1388 -4.4661 -5.1992 39 1 1.8730 -4.3875 -3.0979 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000176210908.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:15:15 Heat of formation + Delta-G solvation = -9.638044 kcal Electronic energy + Delta-G solvation = -22106.862527 eV Core-core repulsion = 18787.911586 eV Total energy + Delta-G solvation = -3318.950941 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 287.131 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.46165 -39.30281 -37.87442 -35.12319 -34.21013 -32.58067 -32.16309 -30.44633 -29.82979 -28.54660 -25.26219 -24.77062 -23.06648 -22.32795 -21.42577 -20.58753 -19.56784 -17.64690 -17.36235 -16.52183 -16.18562 -15.98204 -15.69359 -15.25072 -14.66538 -14.40367 -14.09363 -13.76671 -13.38870 -13.19219 -13.05951 -12.93177 -12.41316 -12.23452 -12.18289 -12.12369 -11.92695 -11.62287 -11.58893 -11.22568 -10.96744 -10.83020 -10.20606 -10.14842 -9.72204 -9.25747 -9.18632 -8.77954 -8.64472 -8.21182 -8.14908 -6.22962 -4.25683 0.85966 1.32314 2.32081 2.71478 3.12658 3.22512 3.34698 3.39638 3.66060 3.83999 4.25129 4.30336 4.60892 4.82680 4.93233 4.96607 5.02319 5.08759 5.12160 5.18471 5.33278 5.37915 5.58696 5.65841 5.74578 5.80661 6.06438 6.18587 6.20072 6.28946 6.34030 6.35193 6.40061 6.53649 6.61970 6.83517 7.15324 7.23527 7.24833 7.48802 8.10012 8.47401 8.72546 8.86313 9.37870 10.89137 Molecular weight = 287.13amu Principal moments of inertia in cm(-1) A = 0.029232 B = 0.003615 C = 0.003458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 957.615566 B = 7743.286415 C = 8095.379669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.042 4.042 3 H 0.126 0.874 4 C 0.506 3.494 5 O -0.541 6.541 6 N -0.697 5.697 7 C 0.237 3.763 8 H 0.049 0.951 9 C -0.162 4.162 10 C -0.535 4.535 11 H 0.081 0.919 12 C 0.079 3.921 13 N -0.892 5.892 14 Si 0.885 3.115 15 H -0.276 1.276 16 H -0.294 1.294 17 H -0.262 1.262 18 C 0.081 3.919 19 C -0.216 4.216 20 C -0.126 4.126 21 C -0.075 4.075 22 C -0.140 4.140 23 C -0.101 4.101 24 C -0.105 4.105 25 C 0.055 3.945 26 O -0.173 6.173 27 H 0.069 0.931 28 H 0.068 0.932 29 H 0.078 0.922 30 H 0.396 0.604 31 H 0.053 0.947 32 H 0.047 0.953 33 H 0.035 0.965 34 H 0.268 0.732 35 H 0.157 0.843 36 H 0.125 0.875 37 H 0.126 0.874 38 H 0.132 0.868 39 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.721 2.085 -21.816 22.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.063 4.063 3 H 0.144 0.856 4 C 0.290 3.710 5 O -0.419 6.419 6 N -0.346 5.346 7 C 0.134 3.866 8 H 0.066 0.934 9 C -0.220 4.220 10 C -0.573 4.573 11 H 0.099 0.901 12 C -0.125 4.125 13 N -0.529 5.529 14 Si 0.714 3.286 15 H -0.203 1.203 16 H -0.221 1.221 17 H -0.187 1.187 18 C 0.032 3.968 19 C -0.236 4.236 20 C -0.127 4.127 21 C -0.093 4.093 22 C -0.159 4.159 23 C -0.119 4.119 24 C -0.123 4.123 25 C 0.007 3.993 26 O -0.073 6.073 27 H 0.088 0.912 28 H 0.087 0.913 29 H 0.096 0.904 30 H 0.230 0.770 31 H 0.073 0.927 32 H 0.066 0.934 33 H 0.054 0.946 34 H 0.077 0.923 35 H 0.175 0.825 36 H 0.143 0.857 37 H 0.144 0.856 38 H 0.150 0.850 39 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 3.011 1.149 -21.493 21.734 hybrid contribution 0.669 -0.016 0.384 0.771 sum 3.680 1.133 -21.109 21.458 Atomic orbital electron populations 1.21806 0.91076 1.03973 1.03388 1.20160 0.98597 0.99308 0.88254 0.85638 1.20135 0.81262 0.85073 0.84559 1.90709 1.38347 1.26229 1.86622 1.46138 1.51711 1.31334 1.05401 1.19120 0.91326 0.93597 0.82606 0.93353 1.22454 0.98768 1.01337 0.99413 1.21025 1.10534 1.33126 0.92619 0.90123 1.24821 0.96505 0.95576 0.95582 1.69861 1.37233 1.44239 1.01557 0.86887 0.82866 0.80540 0.78275 1.20276 1.22107 1.18684 1.21600 0.97605 0.81690 0.95909 1.22128 1.05427 1.00438 0.95564 1.19923 1.01764 0.93834 0.97186 1.20246 0.97896 0.98364 0.92772 1.20724 1.01467 0.93020 1.00644 1.20875 0.97042 0.98853 0.95113 1.19971 1.02637 0.94951 0.94751 1.19667 0.97014 0.96101 0.86492 1.84012 1.61467 1.27351 1.34515 0.91234 0.91261 0.90351 0.77045 0.92742 0.93413 0.94574 0.92253 0.82520 0.85738 0.85605 0.85006 0.85115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.68 9.07 37.15 0.34 -1.34 16 2 C -0.04 -0.57 3.11 -92.93 -0.29 -0.86 16 3 H 0.13 1.28 8.08 -51.93 -0.42 0.86 16 4 C 0.51 9.52 7.11 -10.98 -0.08 9.44 16 5 O -0.54 -12.61 15.44 -2.39 -0.04 -12.65 16 6 N -0.70 -13.47 4.96 -54.93 -0.27 -13.75 16 7 C 0.24 5.63 2.15 -69.08 -0.15 5.48 16 8 H 0.05 1.29 6.64 -51.93 -0.34 0.94 16 9 C -0.16 -3.61 8.96 37.16 0.33 -3.28 16 10 C -0.54 -14.31 9.31 -34.44 -0.32 -14.63 16 11 H 0.08 2.25 7.98 -52.49 -0.42 1.83 16 12 C 0.08 2.20 5.45 -17.82 -0.10 2.11 16 13 N -0.89 -26.28 13.96 55.43 0.77 -25.51 16 14 Si 0.88 21.84 24.37 -169.99 -4.14 17.69 16 15 H -0.28 -6.58 6.87 56.52 0.39 -6.19 16 16 H -0.29 -7.22 7.11 56.52 0.40 -6.81 16 17 H -0.26 -6.49 6.53 56.52 0.37 -6.12 16 18 C 0.08 1.23 5.13 -35.80 -0.18 1.05 16 19 C -0.22 -2.93 10.97 -37.62 -0.41 -3.34 16 20 C -0.13 -1.77 6.40 -105.16 -0.67 -2.44 16 21 C -0.07 -0.84 10.05 -39.69 -0.40 -1.24 16 22 C -0.14 -1.37 9.98 -39.94 -0.40 -1.77 16 23 C -0.10 -1.01 10.01 -39.54 -0.40 -1.41 16 24 C -0.10 -1.31 10.07 -39.46 -0.40 -1.71 16 25 C 0.06 0.85 7.42 -38.47 -0.29 0.56 16 26 O -0.17 -3.00 10.24 -4.04 -0.04 -3.04 16 27 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 29 H 0.08 0.82 7.57 -51.93 -0.39 0.43 16 30 H 0.40 6.50 7.96 -40.82 -0.32 6.17 16 31 H 0.05 1.13 8.14 -51.93 -0.42 0.70 16 32 H 0.05 1.11 3.27 -51.93 -0.17 0.94 16 33 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.27 7.41 8.31 -40.82 -0.34 7.08 16 35 H 0.16 1.63 8.06 -52.49 -0.42 1.21 16 36 H 0.12 1.09 8.06 -52.49 -0.42 0.67 16 37 H 0.13 0.86 8.06 -52.49 -0.42 0.44 16 38 H 0.13 0.92 8.06 -52.48 -0.42 0.50 16 39 H 0.13 1.42 8.06 -52.49 -0.42 1.00 16 LS Contribution 327.32 15.07 4.93 4.93 Total: -1.00 -33.75 327.32 -7.25 -41.01 By element: Atomic # 1 Polarization: 9.75 SS G_CDS: -5.06 Total: 4.70 kcal Atomic # 6 Polarization: -9.98 SS G_CDS: -3.41 Total: -13.39 kcal Atomic # 7 Polarization: -39.75 SS G_CDS: 0.50 Total: -39.25 kcal Atomic # 8 Polarization: -15.61 SS G_CDS: -0.08 Total: -15.69 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -4.14 Total: 17.69 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -33.75 -7.25 -41.01 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000176210908.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.368 kcal (2) G-P(sol) polarization free energy of solvation -33.753 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.006 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds