Wall clock time and date at job start Tue Mar 31 2020 06:15:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52987 * 1 3 3 H 1.08999 * 109.47352 * 2 1 4 4 C 1.50702 * 109.47561 * 120.00555 * 2 1 3 5 5 O 1.21273 * 120.00560 * 119.99883 * 4 2 1 6 6 N 1.34782 * 119.99485 * 299.99900 * 4 2 1 7 7 C 1.46498 * 119.99736 * 179.97438 * 6 4 2 8 8 H 1.09003 * 109.47331 * 325.00046 * 7 6 4 9 9 C 1.52998 * 109.47251 * 85.00410 * 7 6 4 10 10 C 1.50705 * 109.46924 * 205.00296 * 7 6 4 11 11 H 1.07997 * 120.00180 * 359.97438 * 10 7 6 12 12 C 1.37874 * 119.99913 * 180.02562 * 10 7 6 13 13 N 1.31514 * 120.00275 * 179.97438 * 12 10 7 14 14 Si 1.86803 * 119.99977 * 359.97438 * 12 10 7 15 15 H 1.48502 * 109.47232 * 90.00507 * 14 12 10 16 16 H 1.48502 * 109.47053 * 210.00305 * 14 12 10 17 17 H 1.48497 * 109.47096 * 330.00287 * 14 12 10 18 18 C 1.50705 * 109.47327 * 240.00377 * 2 1 3 19 19 C 1.33997 * 124.92353 * 119.99736 * 18 2 1 20 20 C 1.46785 * 106.18379 * 179.97438 * 19 18 2 21 21 C 1.39402 * 134.36782 * 179.97438 * 20 19 18 22 22 C 1.36738 * 119.71519 * 179.97438 * 21 20 19 23 23 C 1.38742 * 120.41803 * 0.02562 * 22 21 20 24 24 C 1.37855 * 120.68496 * 0.02562 * 23 22 21 25 25 C 1.38938 * 119.81787 * 359.97438 * 24 23 22 26 26 O 1.34451 * 124.92103 * 299.97730 * 18 2 1 27 27 H 1.09002 * 109.47431 * 59.99642 * 1 2 3 28 28 H 1.08999 * 109.47352 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47411 * 299.99610 * 1 2 3 30 30 H 0.96994 * 120.00023 * 359.97438 * 6 4 2 31 31 H 1.08993 * 109.47095 * 59.99645 * 9 7 6 32 32 H 1.09004 * 109.47024 * 180.02562 * 9 7 6 33 33 H 1.09004 * 109.46763 * 299.99256 * 9 7 6 34 34 H 0.96995 * 120.00309 * 179.97438 * 13 12 10 35 35 H 1.07996 * 126.90761 * 0.02562 * 19 18 2 36 36 H 1.08001 * 120.14630 * 0.02892 * 21 20 19 37 37 H 1.08002 * 119.79100 * 180.02562 * 22 21 20 38 38 H 1.08004 * 119.66016 * 179.97438 * 23 22 21 39 39 H 1.07999 * 120.08968 * 179.70288 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0276 0.0000 4 6 2.0323 -0.7105 1.2304 5 8 2.7296 -1.6965 1.1191 6 7 1.7067 -0.2501 2.4545 7 6 2.1947 -0.9410 3.6506 8 1 2.2310 -2.0139 3.4611 9 6 3.5973 -0.4362 3.9948 10 6 1.2647 -0.6659 4.8042 11 1 0.3973 -0.0387 4.6608 12 6 1.5219 -1.2140 6.0429 13 7 0.7107 -0.9736 7.0497 14 14 3.0227 -2.2983 6.2911 15 1 4.1780 -1.4588 6.6983 16 1 2.7403 -3.2993 7.3510 17 1 3.3428 -2.9986 5.0214 18 6 2.0323 -0.7103 -1.2305 19 6 2.8059 -0.1563 -2.1740 20 6 3.0475 -1.2047 -3.1726 21 6 3.7590 -1.2652 -4.3698 22 6 3.7860 -2.4308 -5.0841 23 6 3.1096 -3.5518 -4.6249 24 6 2.3999 -3.5106 -3.4439 25 6 2.3597 -2.3361 -2.7027 26 8 1.7695 -1.9920 -1.5406 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.1494 0.5387 2.5436 31 1 3.5610 0.6366 4.1843 32 1 3.9606 -0.9507 4.8845 33 1 4.2700 -0.6353 3.1604 34 1 0.8914 -1.3595 7.9210 35 1 3.1776 0.8574 -2.1950 36 1 4.2875 -0.3954 -4.7312 37 1 4.3372 -2.4792 -6.0116 38 1 3.1388 -4.4661 -5.1992 39 1 1.8730 -4.3875 -3.0979 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000176210908.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:15:14 Heat of formation + Delta-G solvation = -31.819658 kcal Electronic energy + Delta-G solvation = -22107.824394 eV Core-core repulsion = 18787.911586 eV Total energy + Delta-G solvation = -3319.912808 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 287.131 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -43.47405 -40.81434 -38.78819 -36.92060 -35.42063 -34.36895 -33.36816 -31.53803 -31.31998 -29.53177 -27.25293 -25.90499 -24.13935 -23.52826 -22.53952 -21.94604 -21.10348 -19.24511 -18.30930 -18.09373 -17.53042 -17.24037 -17.02978 -16.53555 -16.15191 -15.76817 -15.11303 -15.00764 -14.85059 -14.80025 -14.21704 -14.15929 -13.99591 -13.75045 -13.40183 -13.23659 -13.14346 -12.94675 -12.81118 -12.60582 -12.54879 -12.16342 -11.83979 -11.64664 -11.30224 -11.12406 -10.89482 -10.72676 -9.93022 -9.56950 -9.10685 -8.39920 -6.45323 -0.05294 0.41951 1.24569 1.31071 1.33578 1.42615 1.64873 1.77097 2.24095 2.41091 2.78842 2.96384 3.24950 3.70338 3.78654 3.95256 4.00823 4.11195 4.15965 4.30279 4.41401 4.43928 4.52803 4.55714 4.68392 4.69569 4.77476 4.82698 4.93997 4.98254 5.15284 5.27622 5.30064 5.36031 5.40415 5.49949 5.50951 5.60212 5.80293 6.11551 6.25138 6.56253 6.80571 7.17194 7.39331 8.75155 Molecular weight = 287.13amu Principal moments of inertia in cm(-1) A = 0.029232 B = 0.003615 C = 0.003458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 957.615566 B = 7743.286415 C = 8095.379669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.028 4.028 3 H 0.168 0.832 4 C 0.504 3.496 5 O -0.590 6.590 6 N -0.693 5.693 7 C 0.241 3.759 8 H 0.016 0.984 9 C -0.155 4.155 10 C -0.531 4.531 11 H 0.062 0.938 12 C 0.032 3.968 13 N -0.931 5.931 14 Si 0.935 3.065 15 H -0.258 1.258 16 H -0.292 1.292 17 H -0.269 1.269 18 C 0.045 3.955 19 C -0.204 4.204 20 C -0.151 4.151 21 C -0.079 4.079 22 C -0.136 4.136 23 C -0.090 4.090 24 C -0.131 4.131 25 C 0.016 3.984 26 O -0.209 6.209 27 H 0.098 0.902 28 H 0.042 0.958 29 H 0.090 0.910 30 H 0.411 0.589 31 H 0.070 0.930 32 H 0.039 0.961 33 H 0.042 0.958 34 H 0.271 0.729 35 H 0.189 0.811 36 H 0.152 0.848 37 H 0.164 0.836 38 H 0.166 0.834 39 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.215 3.220 -24.411 24.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.048 4.048 3 H 0.186 0.814 4 C 0.290 3.710 5 O -0.471 6.471 6 N -0.343 5.343 7 C 0.137 3.863 8 H 0.034 0.966 9 C -0.213 4.213 10 C -0.569 4.569 11 H 0.080 0.920 12 C -0.168 4.168 13 N -0.570 5.570 14 Si 0.763 3.237 15 H -0.183 1.183 16 H -0.219 1.219 17 H -0.194 1.194 18 C -0.003 4.003 19 C -0.223 4.223 20 C -0.152 4.152 21 C -0.096 4.096 22 C -0.154 4.154 23 C -0.108 4.108 24 C -0.149 4.149 25 C -0.031 4.031 26 O -0.111 6.111 27 H 0.116 0.884 28 H 0.062 0.938 29 H 0.108 0.892 30 H 0.248 0.752 31 H 0.089 0.911 32 H 0.058 0.942 33 H 0.061 0.939 34 H 0.080 0.920 35 H 0.206 0.794 36 H 0.169 0.831 37 H 0.181 0.819 38 H 0.184 0.816 39 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 4.493 2.322 -24.106 24.631 hybrid contribution 0.182 -0.419 1.028 1.125 sum 4.675 1.903 -23.078 23.624 Atomic orbital electron populations 1.21822 0.89681 1.02928 1.05364 1.20212 0.99584 1.00248 0.84803 0.81444 1.21039 0.80001 0.84417 0.85514 1.90682 1.40541 1.28506 1.87369 1.45934 1.52050 1.31615 1.04677 1.18757 0.91892 0.92429 0.83267 0.96597 1.22341 0.97529 1.02171 0.99260 1.21242 1.10277 1.31928 0.93493 0.91961 1.25498 0.98900 0.96847 0.95592 1.69958 1.39032 1.45856 1.02183 0.86064 0.80632 0.79251 0.77753 1.18309 1.21915 1.19395 1.21937 0.99582 0.81610 0.97186 1.22566 1.03626 1.01527 0.94575 1.20297 1.02757 0.93581 0.98566 1.20673 0.97224 1.00014 0.91731 1.21228 1.00581 0.92108 1.01490 1.21360 0.95071 1.00429 0.93891 1.20332 1.04019 0.94633 0.95925 1.20264 0.98309 0.97825 0.86694 1.83945 1.62644 1.28701 1.35789 0.88371 0.93834 0.89168 0.75237 0.91058 0.94206 0.93867 0.92010 0.79411 0.83056 0.81880 0.81639 0.84812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.11 9.07 71.98 0.65 -2.46 16 2 C -0.03 -0.72 3.11 -12.29 -0.04 -0.76 16 3 H 0.17 2.88 8.08 -2.39 -0.02 2.86 16 4 C 0.50 18.97 7.11 87.66 0.62 19.59 16 5 O -0.59 -28.27 15.44 4.60 0.07 -28.20 16 6 N -0.69 -26.61 4.96 -446.09 -2.21 -28.82 16 7 C 0.24 11.54 2.15 44.25 0.10 11.64 16 8 H 0.02 0.88 6.64 -2.39 -0.02 0.86 16 9 C -0.15 -6.78 8.96 71.98 0.65 -6.13 16 10 C -0.53 -28.76 9.31 25.60 0.24 -28.52 16 11 H 0.06 3.53 7.98 -2.91 -0.02 3.51 16 12 C 0.03 1.78 5.45 84.65 0.46 2.25 16 13 N -0.93 -55.60 13.96 21.45 0.30 -55.30 16 14 Si 0.94 45.25 24.37 68.60 1.67 46.92 16 15 H -0.26 -11.63 6.87 99.48 0.68 -10.94 16 16 H -0.29 -13.92 7.11 99.48 0.71 -13.21 16 17 H -0.27 -13.21 6.53 99.48 0.65 -12.56 16 18 C 0.04 1.35 5.13 24.72 0.13 1.48 16 19 C -0.20 -5.22 10.97 23.54 0.26 -4.96 16 20 C -0.15 -4.08 6.40 -20.21 -0.13 -4.21 16 21 C -0.08 -1.55 10.05 22.20 0.22 -1.33 16 22 C -0.14 -2.20 9.98 22.04 0.22 -1.98 16 23 C -0.09 -1.60 10.01 22.30 0.22 -1.37 16 24 C -0.13 -3.28 10.07 22.35 0.23 -3.06 16 25 C 0.02 0.51 7.42 22.99 0.17 0.68 16 26 O -0.21 -7.55 10.24 -1.29 -0.01 -7.56 16 27 H 0.10 1.62 8.14 -2.39 -0.02 1.60 16 28 H 0.04 1.18 8.14 -2.39 -0.02 1.16 16 29 H 0.09 1.75 7.57 -2.39 -0.02 1.73 16 30 H 0.41 13.11 7.96 -92.71 -0.74 12.37 16 31 H 0.07 2.84 8.14 -2.39 -0.02 2.82 16 32 H 0.04 1.79 3.27 -2.38 -0.01 1.78 16 33 H 0.04 1.80 8.14 -2.38 -0.02 1.78 16 34 H 0.27 15.18 8.31 -92.71 -0.77 14.41 16 35 H 0.19 3.30 8.06 -2.91 -0.02 3.28 16 36 H 0.15 2.07 8.06 -2.91 -0.02 2.05 16 37 H 0.16 1.40 8.06 -2.91 -0.02 1.38 16 38 H 0.17 1.73 8.06 -2.91 -0.02 1.70 16 39 H 0.13 3.05 8.06 -2.91 -0.02 3.02 16 Total: -1.00 -76.59 327.32 4.06 -72.52 By element: Atomic # 1 Polarization: 19.34 SS G_CDS: 0.25 Total: 19.60 kcal Atomic # 6 Polarization: -23.15 SS G_CDS: 4.00 Total: -19.15 kcal Atomic # 7 Polarization: -82.21 SS G_CDS: -1.91 Total: -84.12 kcal Atomic # 8 Polarization: -35.82 SS G_CDS: 0.06 Total: -35.76 kcal Atomic # 14 Polarization: 45.25 SS G_CDS: 1.67 Total: 46.92 kcal Total: -76.59 4.06 -72.52 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000176210908.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.703 kcal (2) G-P(sol) polarization free energy of solvation -76.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.522 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds