Wall clock time and date at job start Tue Mar 31 2020 06:35:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.36937 * 120.00129 * 2 1 4 4 H 1.07999 * 119.99562 * 202.34353 * 3 2 1 5 5 C 1.38804 * 119.99892 * 22.33759 * 3 2 1 6 6 N 1.31622 * 120.00364 * 11.35846 * 5 3 2 7 7 Si 1.86801 * 119.99951 * 191.34763 * 5 3 2 8 8 H 1.48495 * 109.47281 * 60.00518 * 7 5 3 9 9 H 1.48507 * 109.47149 * 180.02562 * 7 5 3 10 10 H 1.48500 * 109.47035 * 300.00529 * 7 5 3 11 11 C 1.46501 * 119.99712 * 179.97438 * 2 1 3 12 12 C 1.53009 * 109.46962 * 269.99984 * 11 2 1 13 13 C 1.53006 * 109.46710 * 180.02562 * 12 11 2 14 14 C 1.50696 * 109.46572 * 180.02562 * 13 12 11 15 15 C 1.38242 * 119.99980 * 90.00291 * 14 13 12 16 16 C 1.38236 * 119.99798 * 179.72422 * 15 14 13 17 17 C 1.38235 * 120.00282 * 0.25068 * 16 15 14 18 18 C 1.50693 * 120.00157 * 180.02562 * 17 16 15 19 19 F 1.39895 * 109.47566 * 90.00383 * 18 17 16 20 20 F 1.39903 * 109.47056 * 210.00309 * 18 17 16 21 21 F 1.39907 * 109.47292 * 329.99910 * 18 17 16 22 22 C 1.38243 * 119.99663 * 0.02562 * 17 16 15 23 23 C 1.38231 * 120.00251 * 359.95705 * 22 17 16 24 24 H 1.08998 * 109.47644 * 274.21152 * 1 2 3 25 25 H 1.09002 * 109.47005 * 34.21626 * 1 2 3 26 26 H 1.09007 * 109.47457 * 154.21359 * 1 2 3 27 27 H 0.97003 * 120.00150 * 180.02562 * 6 5 3 28 28 H 1.09003 * 109.47083 * 150.00390 * 11 2 1 29 29 H 1.09000 * 109.47566 * 29.99806 * 11 2 1 30 30 H 1.09000 * 109.46968 * 60.00796 * 12 11 2 31 31 H 1.08994 * 109.46942 * 299.99816 * 12 11 2 32 32 H 1.08994 * 109.46922 * 60.00106 * 13 12 11 33 33 H 1.08994 * 109.46960 * 300.00044 * 13 12 11 34 34 H 1.07993 * 119.99910 * 359.97438 * 15 14 13 35 35 H 1.08001 * 119.99885 * 180.27418 * 16 15 14 36 36 H 1.08004 * 119.99762 * 179.97438 * 22 17 16 37 37 H 1.07998 * 120.00141 * 180.02562 * 23 22 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1689 1.2209 -0.3556 5 6 1.5338 2.3429 0.4569 6 7 0.3841 2.2691 1.0935 7 14 2.3367 4.0047 0.1685 8 1 2.4916 4.2331 -1.2906 9 1 1.4849 5.0735 0.7495 10 1 3.6720 4.0286 0.8177 11 6 2.1974 -1.2688 0.0006 12 6 2.4524 -1.7098 1.4434 13 6 3.2179 -3.0346 1.4439 14 6 3.4685 -3.4692 2.8649 15 6 2.5468 -4.2676 3.5162 16 6 2.7794 -4.6710 4.8178 17 6 3.9311 -4.2718 5.4698 18 6 4.1849 -4.7121 6.8885 19 9 4.8874 -5.9218 6.8828 20 9 4.9392 -3.7379 7.5512 21 9 2.9636 -4.8851 7.5487 22 6 4.8500 -3.4687 4.8204 23 6 4.6176 -3.0656 3.5188 24 1 -0.3634 0.0755 1.0248 25 1 -0.3633 0.8498 -0.5779 26 1 -0.3634 -0.9254 -0.4471 27 1 -0.0464 3.0777 1.4124 28 1 3.1499 -1.1387 -0.5133 29 1 1.6083 -2.0287 -0.5129 30 1 1.4999 -1.8400 1.9572 31 1 3.0415 -0.9500 1.9568 32 1 4.1703 -2.9040 0.9302 33 1 2.6292 -3.7946 0.9303 34 1 1.6471 -4.5795 3.0068 35 1 2.0615 -5.2984 5.3251 36 1 5.7496 -3.1565 5.3300 37 1 5.3357 -2.4385 3.0113 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000177697254.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:28 Heat of formation + Delta-G solvation = -118.215689 kcal Electronic energy + Delta-G solvation = -22004.738249 eV Core-core repulsion = 18139.222288 eV Total energy + Delta-G solvation = -3865.515961 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 287.119 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -50.28343 -47.79594 -47.75371 -39.60382 -36.13094 -34.16936 -31.67339 -31.18832 -30.01063 -26.93381 -25.82830 -24.58008 -23.02058 -22.38803 -20.86933 -20.14767 -18.62831 -18.55571 -18.48218 -16.72843 -15.70734 -15.53437 -14.87885 -14.65935 -14.58871 -14.53949 -14.21597 -14.07978 -13.97329 -13.91303 -13.65823 -13.50806 -13.39024 -12.81122 -12.66790 -12.32599 -11.60214 -11.52181 -11.35986 -11.15334 -10.83143 -10.78060 -10.58444 -10.42675 -10.08143 -9.87747 -9.73176 -9.14446 -8.97099 -8.52832 -6.73695 -5.71001 -3.16344 0.85850 1.19627 2.55018 3.38704 3.40789 3.44538 3.45324 3.61315 3.91084 4.31001 4.51115 4.69152 4.74182 4.80509 5.22469 5.24455 5.41928 5.49175 5.51187 5.55011 5.82743 5.90317 6.05613 6.07187 6.08787 6.17259 6.43624 6.45679 6.51325 6.71930 6.76955 6.90137 7.10315 7.40266 7.74443 7.81791 8.42071 9.25839 9.89544 10.38286 11.34223 Molecular weight = 287.12amu Principal moments of inertia in cm(-1) A = 0.022590 B = 0.003191 C = 0.003039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1239.184876 B = 8773.546539 C = 9212.656050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.164 3.836 2 N -0.604 5.604 3 C -0.255 4.255 4 H 0.068 0.932 5 C 0.001 3.999 6 N -0.909 5.909 7 Si 0.904 3.096 8 H -0.284 1.284 9 H -0.290 1.290 10 H -0.283 1.283 11 C 0.153 3.847 12 C -0.131 4.131 13 C -0.088 4.088 14 C -0.032 4.032 15 C -0.121 4.121 16 C -0.069 4.069 17 C -0.200 4.200 18 C 0.510 3.490 19 F -0.180 7.180 20 F -0.179 7.179 21 F -0.179 7.179 22 C -0.068 4.068 23 C -0.120 4.120 24 H 0.027 0.973 25 H 0.044 0.956 26 H -0.004 1.004 27 H 0.252 0.748 28 H 0.042 0.958 29 H 0.036 0.964 30 H 0.055 0.945 31 H 0.064 0.936 32 H 0.073 0.927 33 H 0.072 0.928 34 H 0.134 0.866 35 H 0.132 0.868 36 H 0.132 0.868 37 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.943 -16.028 7.646 19.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.326 5.326 3 C -0.384 4.384 4 H 0.085 0.915 5 C -0.197 4.197 6 N -0.554 5.554 7 Si 0.734 3.266 8 H -0.211 1.211 9 H -0.216 1.216 10 H -0.210 1.210 11 C 0.026 3.974 12 C -0.172 4.172 13 C -0.126 4.126 14 C -0.033 4.033 15 C -0.139 4.139 16 C -0.087 4.087 17 C -0.201 4.201 18 C 0.456 3.544 19 F -0.162 7.162 20 F -0.160 7.160 21 F -0.160 7.160 22 C -0.086 4.086 23 C -0.138 4.138 24 H 0.045 0.955 25 H 0.063 0.937 26 H 0.014 0.986 27 H 0.063 0.937 28 H 0.061 0.939 29 H 0.054 0.946 30 H 0.074 0.926 31 H 0.083 0.917 32 H 0.092 0.908 33 H 0.090 0.910 34 H 0.152 0.848 35 H 0.150 0.850 36 H 0.150 0.850 37 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 6.813 -15.875 7.730 18.926 hybrid contribution 0.393 0.936 0.438 1.105 sum 7.206 -14.940 8.169 18.489 Atomic orbital electron populations 1.20789 0.82594 0.95484 0.99196 1.43984 1.01940 1.00782 1.85917 1.19181 0.97944 0.85515 1.35800 0.91453 1.25023 0.97710 0.98499 0.98460 1.70057 1.17870 1.27129 1.40392 0.86343 0.78523 0.83840 0.77870 1.21087 1.21629 1.20967 1.20838 0.95646 0.88084 0.92873 1.22328 0.99354 0.93591 1.01895 1.20828 1.01744 0.99209 0.90809 1.20390 0.92842 0.92870 0.97164 1.21082 0.99795 0.98861 0.94171 1.20887 0.95046 0.97886 0.94887 1.19864 1.00236 1.07167 0.92851 1.18348 0.73913 0.74866 0.87315 1.93208 1.79429 1.46553 1.96978 1.93185 1.76850 1.62965 1.83005 1.93184 1.44372 1.95351 1.83123 1.20901 0.98031 0.94811 0.94905 1.21107 0.98100 1.00413 0.94142 0.95485 0.93743 0.98592 0.93735 0.93935 0.94586 0.92593 0.91732 0.90808 0.90987 0.84839 0.85017 0.84989 0.84731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 4.06 9.01 59.85 0.54 4.60 16 2 N -0.60 -15.14 2.93 -181.11 -0.53 -15.67 16 3 C -0.25 -6.99 9.67 -15.06 -0.15 -7.13 16 4 H 0.07 1.79 7.84 -52.49 -0.41 1.38 16 5 C 0.00 0.03 5.13 -17.43 -0.09 -0.06 16 6 N -0.91 -26.61 10.59 55.49 0.59 -26.02 16 7 Si 0.90 21.84 29.57 -169.99 -5.03 16.81 16 8 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 9 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 10 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 11 C 0.15 3.01 5.71 -4.04 -0.02 2.99 16 12 C -0.13 -2.30 5.52 -26.72 -0.15 -2.45 16 13 C -0.09 -1.13 5.34 -27.88 -0.15 -1.28 16 14 C -0.03 -0.41 5.13 -104.62 -0.54 -0.94 16 15 C -0.12 -1.42 9.70 -39.58 -0.38 -1.80 16 16 C -0.07 -0.78 9.40 -39.58 -0.37 -1.15 16 17 C -0.20 -2.36 5.45 -104.62 -0.57 -2.93 16 18 C 0.51 5.85 3.36 36.00 0.12 5.97 16 19 F -0.18 -2.06 17.30 2.25 0.04 -2.03 16 20 F -0.18 -2.12 16.46 2.25 0.04 -2.08 16 21 F -0.18 -2.10 16.46 2.25 0.04 -2.06 16 22 C -0.07 -0.79 9.40 -39.58 -0.37 -1.16 16 23 C -0.12 -1.44 9.70 -39.58 -0.38 -1.82 16 24 H 0.03 0.72 7.42 -51.93 -0.39 0.33 16 25 H 0.04 1.18 7.19 -51.93 -0.37 0.81 16 26 H 0.00 -0.10 7.85 -51.93 -0.41 -0.50 16 27 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 28 H 0.04 0.81 8.03 -51.93 -0.42 0.39 16 29 H 0.04 0.64 7.86 -51.93 -0.41 0.23 16 30 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 31 H 0.06 1.29 8.14 -51.93 -0.42 0.86 16 32 H 0.07 0.88 8.09 -51.93 -0.42 0.46 16 33 H 0.07 0.83 8.08 -51.93 -0.42 0.41 16 34 H 0.13 1.34 8.06 -52.49 -0.42 0.92 16 35 H 0.13 1.24 7.60 -52.49 -0.40 0.84 16 36 H 0.13 1.29 7.60 -52.48 -0.40 0.89 16 37 H 0.13 1.44 8.06 -52.49 -0.42 1.01 16 LS Contribution 325.45 15.07 4.90 4.90 Total: -1.00 -29.83 325.45 -7.33 -37.16 By element: Atomic # 1 Polarization: 1.01 SS G_CDS: -4.87 Total: -3.86 kcal Atomic # 6 Polarization: -4.65 SS G_CDS: -2.51 Total: -7.16 kcal Atomic # 7 Polarization: -41.75 SS G_CDS: 0.06 Total: -41.69 kcal Atomic # 9 Polarization: -6.28 SS G_CDS: 0.11 Total: -6.17 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.03 Total: 16.81 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -29.83 -7.33 -37.16 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000177697254.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.054 kcal (2) G-P(sol) polarization free energy of solvation -29.830 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.162 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds