Wall clock time and date at job start Tue Mar 31 2020 06:35:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.36937 * 120.00129 * 2 1 4 4 H 1.07999 * 119.99562 * 202.34353 * 3 2 1 5 5 C 1.38804 * 119.99892 * 22.33759 * 3 2 1 6 6 N 1.31622 * 120.00364 * 11.35846 * 5 3 2 7 7 Si 1.86801 * 119.99951 * 191.34763 * 5 3 2 8 8 H 1.48495 * 109.47281 * 60.00518 * 7 5 3 9 9 H 1.48507 * 109.47149 * 180.02562 * 7 5 3 10 10 H 1.48500 * 109.47035 * 300.00529 * 7 5 3 11 11 C 1.46501 * 119.99712 * 179.97438 * 2 1 3 12 12 C 1.53009 * 109.46962 * 269.99984 * 11 2 1 13 13 C 1.53006 * 109.46710 * 180.02562 * 12 11 2 14 14 C 1.50696 * 109.46572 * 180.02562 * 13 12 11 15 15 C 1.38242 * 119.99980 * 90.00291 * 14 13 12 16 16 C 1.38236 * 119.99798 * 179.72422 * 15 14 13 17 17 C 1.38235 * 120.00282 * 0.25068 * 16 15 14 18 18 C 1.50693 * 120.00157 * 180.02562 * 17 16 15 19 19 F 1.39895 * 109.47566 * 90.00383 * 18 17 16 20 20 F 1.39903 * 109.47056 * 210.00309 * 18 17 16 21 21 F 1.39907 * 109.47292 * 329.99910 * 18 17 16 22 22 C 1.38243 * 119.99663 * 0.02562 * 17 16 15 23 23 C 1.38231 * 120.00251 * 359.95705 * 22 17 16 24 24 H 1.08998 * 109.47644 * 274.21152 * 1 2 3 25 25 H 1.09002 * 109.47005 * 34.21626 * 1 2 3 26 26 H 1.09007 * 109.47457 * 154.21359 * 1 2 3 27 27 H 0.97003 * 120.00150 * 180.02562 * 6 5 3 28 28 H 1.09003 * 109.47083 * 150.00390 * 11 2 1 29 29 H 1.09000 * 109.47566 * 29.99806 * 11 2 1 30 30 H 1.09000 * 109.46968 * 60.00796 * 12 11 2 31 31 H 1.08994 * 109.46942 * 299.99816 * 12 11 2 32 32 H 1.08994 * 109.46922 * 60.00106 * 13 12 11 33 33 H 1.08994 * 109.46960 * 300.00044 * 13 12 11 34 34 H 1.07993 * 119.99910 * 359.97438 * 15 14 13 35 35 H 1.08001 * 119.99885 * 180.27418 * 16 15 14 36 36 H 1.08004 * 119.99762 * 179.97438 * 22 17 16 37 37 H 1.07998 * 120.00141 * 180.02562 * 23 22 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1689 1.2209 -0.3556 5 6 1.5338 2.3429 0.4569 6 7 0.3841 2.2691 1.0935 7 14 2.3367 4.0047 0.1685 8 1 2.4916 4.2331 -1.2906 9 1 1.4849 5.0735 0.7495 10 1 3.6720 4.0286 0.8177 11 6 2.1974 -1.2688 0.0006 12 6 2.4524 -1.7098 1.4434 13 6 3.2179 -3.0346 1.4439 14 6 3.4685 -3.4692 2.8649 15 6 2.5468 -4.2676 3.5162 16 6 2.7794 -4.6710 4.8178 17 6 3.9311 -4.2718 5.4698 18 6 4.1849 -4.7121 6.8885 19 9 4.8874 -5.9218 6.8828 20 9 4.9392 -3.7379 7.5512 21 9 2.9636 -4.8851 7.5487 22 6 4.8500 -3.4687 4.8204 23 6 4.6176 -3.0656 3.5188 24 1 -0.3634 0.0755 1.0248 25 1 -0.3633 0.8498 -0.5779 26 1 -0.3634 -0.9254 -0.4471 27 1 -0.0464 3.0777 1.4124 28 1 3.1499 -1.1387 -0.5133 29 1 1.6083 -2.0287 -0.5129 30 1 1.4999 -1.8400 1.9572 31 1 3.0415 -0.9500 1.9568 32 1 4.1703 -2.9040 0.9302 33 1 2.6292 -3.7946 0.9303 34 1 1.6471 -4.5795 3.0068 35 1 2.0615 -5.2984 5.3251 36 1 5.7496 -3.1565 5.3300 37 1 5.3357 -2.4385 3.0113 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000177697254.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:27 Heat of formation + Delta-G solvation = -132.174000 kcal Electronic energy + Delta-G solvation = -22005.343527 eV Core-core repulsion = 18139.222288 eV Total energy + Delta-G solvation = -3866.121239 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 287.119 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -51.20105 -48.72118 -48.66640 -40.51573 -37.84258 -35.51544 -33.36291 -32.06634 -31.49153 -28.25127 -27.81365 -25.85510 -23.90609 -23.83451 -22.13148 -21.60709 -19.54051 -19.45382 -19.40022 -18.73456 -16.98796 -16.55212 -16.41326 -15.72773 -15.67116 -15.51161 -15.39782 -15.26626 -15.13170 -14.92051 -14.85964 -14.82898 -14.53729 -14.26840 -13.99024 -13.53638 -13.11259 -12.94836 -12.72432 -12.61279 -12.46270 -12.30519 -12.06843 -12.04731 -11.91500 -11.74101 -11.29885 -10.61712 -10.02778 -9.94762 -8.74933 -7.80810 -5.28037 -0.06522 0.31222 1.47135 1.49175 1.55698 1.63807 2.48156 2.53592 2.70675 3.00393 3.33341 3.40340 3.72216 3.82198 3.89444 3.91769 4.22367 4.37529 4.43211 4.58368 4.61774 4.74573 4.82731 4.89875 4.94573 4.99508 5.10455 5.18623 5.25441 5.33260 5.35851 5.56289 5.64680 5.67697 5.75998 5.83735 6.36220 7.18241 7.92023 8.34590 9.22887 Molecular weight = 287.12amu Principal moments of inertia in cm(-1) A = 0.022590 B = 0.003191 C = 0.003039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1239.184876 B = 8773.546539 C = 9212.656050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.177 3.823 2 N -0.623 5.623 3 C -0.262 4.262 4 H 0.073 0.927 5 C -0.055 4.055 6 N -0.941 5.941 7 Si 0.967 3.033 8 H -0.277 1.277 9 H -0.296 1.296 10 H -0.275 1.275 11 C 0.147 3.853 12 C -0.115 4.115 13 C -0.074 4.074 14 C -0.048 4.048 15 C -0.125 4.125 16 C -0.074 4.074 17 C -0.207 4.207 18 C 0.513 3.487 19 F -0.180 7.180 20 F -0.181 7.181 21 F -0.180 7.180 22 C -0.075 4.075 23 C -0.128 4.128 24 H -0.001 1.001 25 H 0.015 0.985 26 H 0.032 0.968 27 H 0.246 0.754 28 H 0.050 0.950 29 H 0.061 0.939 30 H 0.038 0.962 31 H 0.033 0.967 32 H 0.087 0.913 33 H 0.092 0.908 34 H 0.150 0.850 35 H 0.149 0.851 36 H 0.146 0.854 37 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.935 -17.204 7.286 20.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 N -0.347 5.347 3 C -0.392 4.392 4 H 0.090 0.910 5 C -0.250 4.250 6 N -0.589 5.589 7 Si 0.795 3.205 8 H -0.203 1.203 9 H -0.223 1.223 10 H -0.201 1.201 11 C 0.022 3.978 12 C -0.156 4.156 13 C -0.112 4.112 14 C -0.049 4.049 15 C -0.143 4.143 16 C -0.092 4.092 17 C -0.209 4.209 18 C 0.459 3.541 19 F -0.161 7.161 20 F -0.163 7.163 21 F -0.162 7.162 22 C -0.093 4.093 23 C -0.146 4.146 24 H 0.018 0.982 25 H 0.034 0.966 26 H 0.050 0.950 27 H 0.055 0.945 28 H 0.069 0.931 29 H 0.079 0.921 30 H 0.057 0.943 31 H 0.052 0.948 32 H 0.105 0.895 33 H 0.111 0.889 34 H 0.167 0.833 35 H 0.167 0.833 36 H 0.164 0.836 37 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 7.837 -17.091 7.363 20.192 hybrid contribution 0.109 1.202 0.560 1.330 sum 7.946 -15.889 7.923 19.452 Atomic orbital electron populations 1.20531 0.82959 0.95967 0.97320 1.44265 1.02184 1.02075 1.86139 1.19553 0.98163 0.86758 1.34740 0.90967 1.25779 0.98471 1.01847 0.98907 1.70236 1.19346 1.27367 1.41922 0.85350 0.77671 0.79606 0.77892 1.20337 1.22264 1.20114 1.21067 0.95858 0.86507 0.94402 1.21997 0.98635 0.95377 0.99545 1.20667 1.01975 0.96887 0.91680 1.20447 0.93531 0.93808 0.97082 1.21321 1.00107 0.98474 0.94374 1.21133 0.95215 0.97901 0.94926 1.20023 1.00591 1.07275 0.92973 1.18294 0.73791 0.74785 0.87184 1.93209 1.79414 1.46509 1.96969 1.93180 1.76921 1.63103 1.83070 1.93180 1.44479 1.95356 1.83165 1.21109 0.98598 0.94654 0.94910 1.21308 0.98346 1.00449 0.94450 0.98245 0.96591 0.95003 0.94464 0.93127 0.92079 0.94349 0.94817 0.89490 0.88907 0.83266 0.83336 0.83587 0.83800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.81 9.01 127.77 1.15 9.96 16 2 N -0.62 -31.00 2.93 -726.92 -2.13 -33.13 16 3 C -0.26 -14.33 9.67 84.03 0.81 -13.52 16 4 H 0.07 3.79 7.84 -2.91 -0.02 3.77 16 5 C -0.06 -3.12 5.13 84.86 0.44 -2.69 16 6 N -0.94 -56.32 10.59 21.65 0.23 -56.09 16 7 Si 0.97 45.13 29.57 68.60 2.03 47.16 16 8 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 9 H -0.30 -14.00 7.11 99.48 0.71 -13.30 16 10 H -0.28 -12.37 7.11 99.48 0.71 -11.67 16 11 C 0.15 5.54 5.71 86.38 0.49 6.03 16 12 C -0.12 -3.92 5.52 30.60 0.17 -3.75 16 13 C -0.07 -1.74 5.34 29.85 0.16 -1.58 16 14 C -0.05 -1.13 5.13 -19.86 -0.10 -1.23 16 15 C -0.12 -2.67 9.70 22.27 0.22 -2.46 16 16 C -0.07 -1.54 9.40 22.27 0.21 -1.33 16 17 C -0.21 -4.58 5.45 -19.87 -0.11 -4.69 16 18 C 0.51 11.09 3.36 71.23 0.24 11.33 16 19 F -0.18 -3.86 17.30 44.97 0.78 -3.08 16 20 F -0.18 -4.08 16.46 44.97 0.74 -3.34 16 21 F -0.18 -3.99 16.46 44.97 0.74 -3.25 16 22 C -0.07 -1.61 9.40 22.27 0.21 -1.40 16 23 C -0.13 -2.87 9.70 22.27 0.22 -2.66 16 24 H 0.00 -0.04 7.42 -2.39 -0.02 -0.06 16 25 H 0.02 0.84 7.19 -2.39 -0.02 0.82 16 26 H 0.03 1.31 7.85 -2.38 -0.02 1.30 16 27 H 0.25 14.40 8.31 -92.71 -0.77 13.63 16 28 H 0.05 1.82 8.03 -2.39 -0.02 1.80 16 29 H 0.06 1.99 7.86 -2.39 -0.02 1.97 16 30 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 31 H 0.03 1.33 8.14 -2.39 -0.02 1.31 16 32 H 0.09 1.82 8.09 -2.39 -0.02 1.80 16 33 H 0.09 1.81 8.08 -2.39 -0.02 1.79 16 34 H 0.15 2.63 8.06 -2.91 -0.02 2.61 16 35 H 0.15 2.50 7.60 -2.91 -0.02 2.48 16 36 H 0.15 2.63 7.60 -2.91 -0.02 2.61 16 37 H 0.14 2.86 8.06 -2.91 -0.02 2.84 16 Total: -1.00 -63.97 325.45 7.56 -56.41 By element: Atomic # 1 Polarization: 2.23 SS G_CDS: 1.07 Total: 3.30 kcal Atomic # 6 Polarization: -12.08 SS G_CDS: 4.10 Total: -7.98 kcal Atomic # 7 Polarization: -87.33 SS G_CDS: -1.90 Total: -89.22 kcal Atomic # 9 Polarization: -11.93 SS G_CDS: 2.26 Total: -9.67 kcal Atomic # 14 Polarization: 45.13 SS G_CDS: 2.03 Total: 47.16 kcal Total: -63.97 7.56 -56.41 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000177697254.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.764 kcal (2) G-P(sol) polarization free energy of solvation -63.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.410 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds