Wall clock time and date at job start Tue Mar 31 2020 06:06:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09003 * 109.47340 * 2 1 4 4 N 1.46906 * 109.47113 * 119.99821 * 2 1 3 5 5 C 1.46901 * 110.99793 * 275.00325 * 4 2 1 6 6 C 1.53000 * 109.46769 * 180.02562 * 5 4 2 7 7 C 1.53001 * 109.46886 * 180.02562 * 6 5 4 8 8 C 1.50697 * 109.47291 * 179.97438 * 7 6 5 9 9 H 1.08006 * 119.99920 * 359.97438 * 8 7 6 10 10 C 1.37876 * 120.00428 * 179.97438 * 8 7 6 11 11 N 1.31519 * 119.99563 * 359.97438 * 10 8 7 12 12 Si 1.86800 * 120.00432 * 180.02562 * 10 8 7 13 13 H 1.48508 * 109.47282 * 89.99593 * 12 10 8 14 14 H 1.48498 * 109.47211 * 210.00040 * 12 10 8 15 15 H 1.48506 * 109.46856 * 330.00220 * 12 10 8 16 16 C 1.50696 * 109.47391 * 239.99666 * 2 1 3 17 17 C 1.38223 * 119.95898 * 279.73161 * 16 2 1 18 18 C 1.38426 * 120.04748 * 179.72689 * 17 16 2 19 19 F 1.35106 * 120.02624 * 180.29220 * 18 17 16 20 20 C 1.38603 * 119.95725 * 0.54093 * 18 17 16 21 21 F 1.35095 * 120.05041 * 179.75113 * 20 18 17 22 22 C 1.38605 * 119.90479 * 359.73015 * 20 18 17 23 23 F 1.35099 * 120.01910 * 180.02562 * 22 20 18 24 24 C 1.38228 * 119.95742 * 99.99830 * 16 2 1 25 25 H 1.09003 * 109.47340 * 179.97438 * 1 2 3 26 26 H 1.08995 * 109.47731 * 300.00135 * 1 2 3 27 27 H 1.08996 * 109.47268 * 60.00580 * 1 2 3 28 28 H 1.00899 * 110.99995 * 151.04723 * 4 2 1 29 29 H 1.09002 * 109.47401 * 59.99808 * 5 4 2 30 30 H 1.09001 * 109.46874 * 299.99821 * 5 4 2 31 31 H 1.09001 * 109.47194 * 299.99524 * 6 5 4 32 32 H 1.08992 * 109.47399 * 59.99697 * 6 5 4 33 33 H 1.09001 * 109.47109 * 299.99380 * 7 6 5 34 34 H 1.09002 * 109.47508 * 59.99571 * 7 6 5 35 35 H 0.97000 * 119.99425 * 180.02562 * 11 10 8 36 36 H 1.08009 * 119.97710 * 359.97438 * 17 16 2 37 37 H 1.08006 * 119.97380 * 359.97438 * 24 16 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0196 -0.6925 1.1995 5 6 2.0823 0.2227 2.3469 6 6 2.5961 -0.5328 3.5742 7 6 2.6608 0.4202 4.7694 8 6 3.1663 -0.3240 5.9785 9 1 3.4160 -1.3720 5.9021 10 6 3.3100 0.3330 7.1821 11 7 3.0064 1.6093 7.2749 12 14 3.9372 -0.5893 8.6806 13 1 5.4182 -0.4950 8.7358 14 1 3.3569 0.0097 9.9092 15 1 3.5351 -2.0159 8.5879 16 6 2.0323 -0.7104 -1.2304 17 6 2.0716 -2.0918 -1.2622 18 6 2.5274 -2.7463 -2.3935 19 9 2.5601 -4.0966 -2.4263 20 6 2.9552 -2.0156 -3.4908 21 9 3.4051 -2.6524 -4.5940 22 6 2.9203 -0.6304 -3.4548 23 9 3.3362 0.0841 -4.5233 24 6 2.4585 0.0202 -2.3237 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5137 -0.8900 28 1 2.9173 -1.1205 1.0288 29 1 1.0869 0.6164 2.5525 30 1 2.7587 1.0463 2.1182 31 1 1.9201 -1.3566 3.8031 32 1 3.5915 -0.9261 3.3683 33 1 3.3367 1.2443 4.5409 34 1 1.6652 0.8132 4.9752 35 1 3.1078 2.0715 8.1216 36 1 1.7426 -2.6609 -0.4051 37 1 2.4307 1.0995 -2.2954 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000178644573.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:01 Heat of formation + Delta-G solvation = -127.478173 kcal Electronic energy + Delta-G solvation = -21679.577755 eV Core-core repulsion = 17813.660143 eV Total energy + Delta-G solvation = -3865.917612 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 287.119 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -50.05306 -49.48127 -48.74086 -39.83215 -36.78847 -34.05021 -32.31046 -30.98409 -30.25330 -29.02990 -26.14981 -24.19066 -23.77157 -22.42837 -20.92491 -20.21322 -18.47196 -18.22210 -17.71839 -17.07428 -16.41917 -16.31512 -15.80838 -15.76833 -15.25995 -15.21764 -14.79629 -14.66330 -14.61317 -14.26692 -13.77830 -13.30293 -13.07561 -12.62549 -12.29003 -12.23537 -12.01827 -11.94997 -11.62669 -11.47083 -11.15254 -10.84609 -10.61233 -10.52565 -9.74843 -9.40819 -9.32894 -9.17790 -9.06238 -8.40633 -8.36051 -6.01732 -4.03868 0.29710 0.38257 2.72065 2.99215 3.31108 3.37491 3.41063 3.71698 3.82186 3.97008 4.06937 4.28313 4.46183 4.62196 4.94635 5.07732 5.13056 5.19713 5.34363 5.37534 5.48565 5.58225 5.66480 5.76900 5.77447 5.88987 6.11658 6.22967 6.26756 6.63693 6.67911 7.07912 7.16732 7.43168 7.65512 7.79609 7.98358 8.41377 9.03348 9.60427 11.09692 Molecular weight = 287.12amu Principal moments of inertia in cm(-1) A = 0.026642 B = 0.002710 C = 0.002606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1050.709979 B =10330.529429 C =10742.062435 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.121 3.879 3 H 0.061 0.939 4 N -0.685 5.685 5 C 0.059 3.941 6 C -0.107 4.107 7 C 0.022 3.978 8 C -0.520 4.520 9 H 0.055 0.945 10 C 0.056 3.944 11 N -0.897 5.897 12 Si 0.892 3.108 13 H -0.281 1.281 14 H -0.286 1.286 15 H -0.273 1.273 16 C -0.036 4.036 17 C -0.116 4.116 18 C 0.100 3.900 19 F -0.119 7.119 20 C 0.026 3.974 21 F -0.120 7.120 22 C 0.098 3.902 23 F -0.121 7.121 24 C -0.130 4.130 25 H 0.065 0.935 26 H 0.067 0.933 27 H 0.056 0.944 28 H 0.341 0.659 29 H 0.071 0.929 30 H 0.028 0.972 31 H 0.057 0.943 32 H 0.045 0.955 33 H 0.013 0.987 34 H 0.016 0.984 35 H 0.260 0.740 36 H 0.165 0.835 37 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.216 -3.910 -22.273 22.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.011 3.989 3 H 0.079 0.921 4 N -0.317 5.317 5 C -0.070 4.070 6 C -0.145 4.145 7 C -0.015 4.015 8 C -0.558 4.558 9 H 0.073 0.927 10 C -0.145 4.145 11 N -0.536 5.536 12 Si 0.720 3.280 13 H -0.207 1.207 14 H -0.212 1.212 15 H -0.198 1.198 16 C -0.037 4.037 17 C -0.135 4.135 18 C 0.079 3.921 19 F -0.097 7.097 20 C 0.005 3.995 21 F -0.098 7.098 22 C 0.078 3.922 23 F -0.099 7.099 24 C -0.150 4.150 25 H 0.084 0.916 26 H 0.086 0.914 27 H 0.075 0.925 28 H 0.159 0.841 29 H 0.089 0.911 30 H 0.046 0.954 31 H 0.076 0.924 32 H 0.064 0.936 33 H 0.032 0.968 34 H 0.034 0.966 35 H 0.070 0.930 36 H 0.183 0.817 37 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -3.812 -4.058 -22.060 22.752 hybrid contribution 1.381 -0.116 0.153 1.394 sum -2.431 -4.174 -21.907 22.433 Atomic orbital electron populations 1.21814 0.92802 1.02987 1.01925 1.20530 0.96700 0.95555 0.86081 0.92076 1.60755 1.33504 1.33875 1.03536 1.22217 1.00826 0.93634 0.90275 1.21630 0.99355 0.99530 0.94027 1.19059 0.97132 0.94193 0.91142 1.21252 1.43564 0.96421 0.94556 0.92662 1.25029 0.95606 0.94894 0.98981 1.69965 1.48858 1.09003 1.25776 0.86598 0.78977 0.80052 0.82405 1.20698 1.21233 1.19828 1.19817 0.95639 0.92676 0.95546 1.21179 1.00146 0.94782 0.97402 1.17390 1.02793 0.77768 0.94130 1.91580 1.94101 1.27365 1.96642 1.17621 1.06884 0.89469 0.85540 1.91552 1.86817 1.81525 1.49938 1.17280 1.01914 0.86886 0.86163 1.91566 1.87682 1.77305 1.53342 1.21078 1.00688 1.01942 0.91271 0.91591 0.91408 0.92504 0.84057 0.91095 0.95422 0.92432 0.93601 0.96821 0.96555 0.93020 0.81701 0.82859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.25 9.39 37.15 0.35 -0.90 16 2 C 0.12 1.16 2.82 -68.87 -0.19 0.97 16 3 H 0.06 0.57 7.66 -51.93 -0.40 0.18 16 4 N -0.68 -8.23 5.68 -107.95 -0.61 -8.84 16 5 C 0.06 0.89 5.48 -3.82 -0.02 0.87 16 6 C -0.11 -2.08 5.41 -26.73 -0.14 -2.23 16 7 C 0.02 0.56 4.97 -27.88 -0.14 0.42 16 8 C -0.52 -14.52 9.11 -34.44 -0.31 -14.84 16 9 H 0.06 1.50 7.74 -52.48 -0.41 1.10 16 10 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 11 N -0.90 -26.69 13.29 55.43 0.74 -25.95 16 12 Si 0.89 21.48 29.54 -169.99 -5.02 16.46 16 13 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 14 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16 15 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 16 C -0.04 -0.31 4.72 -104.63 -0.49 -0.80 16 17 C -0.12 -1.05 8.98 -39.52 -0.35 -1.40 16 18 C 0.10 1.00 7.31 -39.38 -0.29 0.71 16 19 F -0.12 -1.31 17.18 2.25 0.04 -1.27 16 20 C 0.03 0.27 7.31 -39.31 -0.29 -0.01 16 21 F -0.12 -1.41 17.10 2.25 0.04 -1.37 16 22 C 0.10 0.94 7.31 -39.38 -0.29 0.65 16 23 F -0.12 -1.25 17.18 2.25 0.04 -1.21 16 24 C -0.13 -1.06 9.64 -39.52 -0.38 -1.44 16 25 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 26 H 0.07 0.68 7.45 -51.93 -0.39 0.29 16 27 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.34 3.92 7.98 -39.29 -0.31 3.60 16 29 H 0.07 1.10 7.44 -51.93 -0.39 0.71 16 30 H 0.03 0.42 8.06 -51.93 -0.42 0.00 16 31 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16 32 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 33 H 0.01 0.36 8.14 -51.93 -0.42 -0.07 16 34 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 36 H 0.17 1.44 7.70 -52.48 -0.40 1.03 16 37 H 0.15 0.95 8.03 -52.48 -0.42 0.53 16 LS Contribution 328.42 15.07 4.95 4.95 Total: -1.00 -29.49 328.42 -7.29 -36.79 By element: Atomic # 1 Polarization: 1.76 SS G_CDS: -4.81 Total: -3.05 kcal Atomic # 6 Polarization: -13.85 SS G_CDS: -2.65 Total: -16.50 kcal Atomic # 7 Polarization: -34.92 SS G_CDS: 0.12 Total: -34.80 kcal Atomic # 9 Polarization: -3.97 SS G_CDS: 0.12 Total: -3.85 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -29.49 -7.29 -36.79 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000178644573.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.693 kcal (2) G-P(sol) polarization free energy of solvation -29.494 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.786 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds