Wall clock time and date at job start Tue Mar 31 2020 06:06:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09003 * 109.47340 * 2 1 4 4 N 1.46906 * 109.47113 * 119.99821 * 2 1 3 5 5 C 1.46901 * 110.99793 * 275.00325 * 4 2 1 6 6 C 1.53000 * 109.46769 * 180.02562 * 5 4 2 7 7 C 1.53001 * 109.46886 * 180.02562 * 6 5 4 8 8 C 1.50697 * 109.47291 * 179.97438 * 7 6 5 9 9 H 1.08006 * 119.99920 * 359.97438 * 8 7 6 10 10 C 1.37876 * 120.00428 * 179.97438 * 8 7 6 11 11 N 1.31519 * 119.99563 * 359.97438 * 10 8 7 12 12 Si 1.86800 * 120.00432 * 180.02562 * 10 8 7 13 13 H 1.48508 * 109.47282 * 89.99593 * 12 10 8 14 14 H 1.48498 * 109.47211 * 210.00040 * 12 10 8 15 15 H 1.48506 * 109.46856 * 330.00220 * 12 10 8 16 16 C 1.50696 * 109.47391 * 239.99666 * 2 1 3 17 17 C 1.38223 * 119.95898 * 279.73161 * 16 2 1 18 18 C 1.38426 * 120.04748 * 179.72689 * 17 16 2 19 19 F 1.35106 * 120.02624 * 180.29220 * 18 17 16 20 20 C 1.38603 * 119.95725 * 0.54093 * 18 17 16 21 21 F 1.35095 * 120.05041 * 179.75113 * 20 18 17 22 22 C 1.38605 * 119.90479 * 359.73015 * 20 18 17 23 23 F 1.35099 * 120.01910 * 180.02562 * 22 20 18 24 24 C 1.38228 * 119.95742 * 99.99830 * 16 2 1 25 25 H 1.09003 * 109.47340 * 179.97438 * 1 2 3 26 26 H 1.08995 * 109.47731 * 300.00135 * 1 2 3 27 27 H 1.08996 * 109.47268 * 60.00580 * 1 2 3 28 28 H 1.00899 * 110.99995 * 151.04723 * 4 2 1 29 29 H 1.09002 * 109.47401 * 59.99808 * 5 4 2 30 30 H 1.09001 * 109.46874 * 299.99821 * 5 4 2 31 31 H 1.09001 * 109.47194 * 299.99524 * 6 5 4 32 32 H 1.08992 * 109.47399 * 59.99697 * 6 5 4 33 33 H 1.09001 * 109.47109 * 299.99380 * 7 6 5 34 34 H 1.09002 * 109.47508 * 59.99571 * 7 6 5 35 35 H 0.97000 * 119.99425 * 180.02562 * 11 10 8 36 36 H 1.08009 * 119.97710 * 359.97438 * 17 16 2 37 37 H 1.08006 * 119.97380 * 359.97438 * 24 16 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0196 -0.6925 1.1995 5 6 2.0823 0.2227 2.3469 6 6 2.5961 -0.5328 3.5742 7 6 2.6608 0.4202 4.7694 8 6 3.1663 -0.3240 5.9785 9 1 3.4160 -1.3720 5.9021 10 6 3.3100 0.3330 7.1821 11 7 3.0064 1.6093 7.2749 12 14 3.9372 -0.5893 8.6806 13 1 5.4182 -0.4950 8.7358 14 1 3.3569 0.0097 9.9092 15 1 3.5351 -2.0159 8.5879 16 6 2.0323 -0.7104 -1.2304 17 6 2.0716 -2.0918 -1.2622 18 6 2.5274 -2.7463 -2.3935 19 9 2.5601 -4.0966 -2.4263 20 6 2.9552 -2.0156 -3.4908 21 9 3.4051 -2.6524 -4.5940 22 6 2.9203 -0.6304 -3.4548 23 9 3.3362 0.0841 -4.5233 24 6 2.4585 0.0202 -2.3237 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5137 -0.8900 28 1 2.9173 -1.1205 1.0288 29 1 1.0869 0.6164 2.5525 30 1 2.7587 1.0463 2.1182 31 1 1.9201 -1.3566 3.8031 32 1 3.5915 -0.9261 3.3683 33 1 3.3367 1.2443 4.5409 34 1 1.6652 0.8132 4.9752 35 1 3.1078 2.0715 8.1216 36 1 1.7426 -2.6609 -0.4051 37 1 2.4307 1.0995 -2.2954 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000178644573.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:01 Heat of formation + Delta-G solvation = -143.422238 kcal Electronic energy + Delta-G solvation = -21680.269142 eV Core-core repulsion = 17813.660143 eV Total energy + Delta-G solvation = -3866.608999 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 287.119 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -50.86999 -50.27188 -49.56582 -40.60017 -37.83759 -35.74285 -33.92854 -31.79736 -31.48609 -29.93019 -27.79462 -25.23000 -24.61213 -23.84018 -21.93931 -21.64753 -19.29466 -19.01553 -18.53149 -18.41168 -17.87585 -17.18519 -16.84597 -16.56622 -16.51934 -16.06874 -16.05093 -15.75885 -15.53944 -15.41911 -14.95440 -14.44565 -14.05309 -13.79785 -13.72647 -13.42253 -13.19766 -12.83902 -12.77598 -12.70735 -12.52868 -12.39087 -12.14624 -12.02102 -11.44997 -11.33558 -11.07238 -10.52651 -10.05514 -9.93653 -9.39679 -8.18324 -6.28533 -0.46119 -0.33175 1.41817 1.42521 1.53813 1.99368 2.24451 2.42588 2.91936 3.04374 3.15246 3.19657 3.32823 3.41227 3.93875 4.18236 4.28330 4.34841 4.36919 4.44609 4.54520 4.68053 4.75783 4.78259 4.88333 5.01793 5.02271 5.09635 5.25186 5.29521 5.43442 5.49848 5.56314 5.80555 5.90277 6.06183 6.30195 6.46021 6.89236 7.40740 8.93399 Molecular weight = 287.12amu Principal moments of inertia in cm(-1) A = 0.026642 B = 0.002710 C = 0.002606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1050.709979 B =10330.529429 C =10742.062435 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.124 3.876 3 H 0.072 0.928 4 N -0.684 5.684 5 C 0.073 3.927 6 C -0.094 4.094 7 C 0.025 3.975 8 C -0.542 4.542 9 H 0.059 0.941 10 C -0.001 4.001 11 N -0.933 5.933 12 Si 0.962 3.038 13 H -0.273 1.273 14 H -0.283 1.283 15 H -0.264 1.264 16 C -0.031 4.031 17 C -0.108 4.108 18 C 0.092 3.908 19 F -0.128 7.128 20 C 0.014 3.986 21 F -0.131 7.131 22 C 0.094 3.906 23 F -0.126 7.126 24 C -0.113 4.113 25 H 0.062 0.938 26 H 0.056 0.944 27 H 0.076 0.924 28 H 0.346 0.654 29 H 0.068 0.932 30 H 0.028 0.972 31 H 0.053 0.947 32 H 0.049 0.951 33 H -0.009 1.009 34 H -0.007 1.007 35 H 0.263 0.737 36 H 0.169 0.831 37 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.175 -4.185 -22.556 23.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.015 3.985 3 H 0.090 0.910 4 N -0.316 5.316 5 C -0.056 4.056 6 C -0.132 4.132 7 C -0.013 4.013 8 C -0.580 4.580 9 H 0.077 0.923 10 C -0.198 4.198 11 N -0.574 5.574 12 Si 0.787 3.213 13 H -0.199 1.199 14 H -0.208 1.208 15 H -0.188 1.188 16 C -0.032 4.032 17 C -0.127 4.127 18 C 0.071 3.929 19 F -0.106 7.106 20 C -0.007 4.007 21 F -0.110 7.110 22 C 0.073 3.927 23 F -0.104 7.104 24 C -0.132 4.132 25 H 0.081 0.919 26 H 0.075 0.925 27 H 0.095 0.905 28 H 0.165 0.835 29 H 0.086 0.914 30 H 0.047 0.953 31 H 0.072 0.928 32 H 0.068 0.932 33 H 0.010 0.990 34 H 0.011 0.989 35 H 0.072 0.928 36 H 0.187 0.813 37 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges -3.771 -4.346 -22.364 23.092 hybrid contribution 1.348 -0.006 0.213 1.365 sum -2.423 -4.353 -22.151 22.704 Atomic orbital electron populations 1.21823 0.92269 1.02998 1.02402 1.20549 0.97030 0.95870 0.85084 0.91002 1.60646 1.33933 1.33337 1.03723 1.21878 1.00360 0.93424 0.89890 1.21376 0.99787 0.98327 0.93710 1.18971 0.94888 0.94467 0.92960 1.21732 1.43539 0.96871 0.95886 0.92320 1.25955 0.95768 0.95766 1.02356 1.70090 1.49944 1.10628 1.26725 0.85493 0.78562 0.78993 0.78284 1.19852 1.20818 1.18792 1.19692 0.95796 0.92357 0.95385 1.21207 0.99432 0.95015 0.97008 1.17442 1.03560 0.77425 0.94449 1.91554 1.94278 1.28062 1.96712 1.17840 1.07424 0.90026 0.85401 1.91517 1.87077 1.81847 1.50567 1.17348 1.02348 0.86469 0.86511 1.91555 1.87830 1.77308 1.53715 1.21262 0.98793 1.03074 0.90079 0.91850 0.92471 0.90525 0.83490 0.91353 0.95335 0.92810 0.93216 0.99036 0.98898 0.92828 0.81342 0.80400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.15 9.39 71.98 0.68 -1.48 16 2 C 0.12 2.04 2.82 44.16 0.12 2.17 16 3 H 0.07 1.10 7.66 -2.39 -0.02 1.09 16 4 N -0.68 -15.03 5.68 -495.44 -2.82 -17.85 16 5 C 0.07 2.15 5.48 86.30 0.47 2.62 16 6 C -0.09 -3.59 5.41 30.59 0.17 -3.43 16 7 C 0.02 1.26 4.97 29.85 0.15 1.41 16 8 C -0.54 -30.45 9.11 25.60 0.23 -30.22 16 9 H 0.06 3.17 7.74 -2.91 -0.02 3.15 16 10 C 0.00 -0.05 5.46 84.65 0.46 0.41 16 11 N -0.93 -56.20 13.29 21.45 0.28 -55.92 16 12 Si 0.96 43.85 29.54 68.60 2.03 45.88 16 13 H -0.27 -12.03 7.11 99.48 0.71 -11.33 16 14 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 15 H -0.26 -11.50 7.11 99.48 0.71 -10.80 16 16 C -0.03 -0.46 4.72 -19.87 -0.09 -0.55 16 17 C -0.11 -1.74 8.98 22.31 0.20 -1.54 16 18 C 0.09 1.75 7.31 22.40 0.16 1.91 16 19 F -0.13 -2.76 17.18 44.97 0.77 -1.99 16 20 C 0.01 0.29 7.31 22.44 0.16 0.45 16 21 F -0.13 -3.06 17.10 44.97 0.77 -2.29 16 22 C 0.09 1.63 7.31 22.40 0.16 1.79 16 23 F -0.13 -2.41 17.18 44.97 0.77 -1.64 16 24 C -0.11 -1.51 9.64 22.31 0.22 -1.29 16 25 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 26 H 0.06 1.04 7.45 -2.39 -0.02 1.02 16 27 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 28 H 0.35 7.16 7.98 -89.69 -0.72 6.45 16 29 H 0.07 2.05 7.44 -2.39 -0.02 2.03 16 30 H 0.03 0.83 8.06 -2.39 -0.02 0.81 16 31 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 32 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 33 H -0.01 -0.48 8.14 -2.39 -0.02 -0.50 16 34 H -0.01 -0.41 8.14 -2.39 -0.02 -0.43 16 35 H 0.26 14.87 8.31 -92.71 -0.77 14.10 16 36 H 0.17 2.63 7.70 -2.91 -0.02 2.60 16 37 H 0.18 1.51 8.03 -2.91 -0.02 1.49 16 Total: -1.00 -63.27 328.42 5.28 -57.99 By element: Atomic # 1 Polarization: 3.20 SS G_CDS: 0.38 Total: 3.58 kcal Atomic # 6 Polarization: -30.85 SS G_CDS: 3.10 Total: -27.76 kcal Atomic # 7 Polarization: -71.23 SS G_CDS: -2.53 Total: -73.77 kcal Atomic # 9 Polarization: -8.23 SS G_CDS: 2.31 Total: -5.92 kcal Atomic # 14 Polarization: 43.85 SS G_CDS: 2.03 Total: 45.88 kcal Total: -63.27 5.28 -57.99 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000178644573.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.431 kcal (2) G-P(sol) polarization free energy of solvation -63.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.991 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds