Wall clock time and date at job start Tue Mar 31 2020 06:36:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.46495 * 120.00383 * 2 1 4 4 C 1.50702 * 109.47005 * 270.00211 * 3 2 1 5 5 H 1.07993 * 119.99948 * 359.97438 * 4 3 2 6 6 C 1.37878 * 119.99769 * 180.02562 * 4 3 2 7 7 N 1.31515 * 120.00334 * 359.97438 * 6 4 3 8 8 Si 1.86807 * 119.99697 * 179.97438 * 6 4 3 9 9 H 1.48499 * 109.47115 * 59.99883 * 8 6 4 10 10 H 1.48504 * 109.47049 * 179.97438 * 8 6 4 11 11 H 1.48501 * 109.46979 * 299.99889 * 8 6 4 12 12 C 1.34785 * 119.99767 * 180.02562 * 2 1 3 13 13 O 1.21365 * 119.99796 * 185.01493 * 12 2 1 14 14 C 1.49292 * 119.99867 * 5.00963 * 12 2 1 15 15 O 1.21355 * 120.00531 * 275.22880 * 14 12 2 16 16 C 1.47401 * 119.99782 * 95.22901 * 14 12 2 17 17 C 1.39926 * 120.21678 * 354.84508 * 16 14 12 18 18 C 1.37695 * 119.75740 * 179.97438 * 17 16 14 19 19 C 1.38771 * 120.44720 * 359.97438 * 18 17 16 20 20 C 1.38474 * 120.12301 * 0.02562 * 19 18 17 21 21 C 1.38122 * 120.02901 * 0.04891 * 20 19 18 22 22 C 1.51400 * 109.72190 * 180.02562 * 20 19 18 23 23 C 1.54329 * 105.18197 * 342.77926 * 22 20 19 24 24 C 1.51732 * 130.10923 * 179.84668 * 19 18 17 25 25 H 1.08997 * 109.47539 * 264.83357 * 1 2 3 26 26 H 1.08997 * 109.47112 * 24.83068 * 1 2 3 27 27 H 1.08996 * 109.47413 * 144.82789 * 1 2 3 28 28 H 1.08998 * 109.47286 * 29.99757 * 3 2 1 29 29 H 1.08995 * 109.47191 * 149.99988 * 3 2 1 30 30 H 0.96994 * 120.00013 * 179.97438 * 7 6 4 31 31 H 1.07999 * 120.12370 * 0.02562 * 17 16 14 32 32 H 1.07997 * 119.77645 * 180.02562 * 18 17 16 33 33 H 1.08003 * 119.96267 * 180.02562 * 21 20 19 34 34 H 1.08996 * 110.30088 * 223.84435 * 22 20 19 35 35 H 1.09008 * 110.38126 * 101.74577 * 22 20 19 36 36 H 1.08993 * 110.81860 * 144.67159 * 23 22 20 37 37 H 1.09005 * 110.81184 * 268.00328 * 23 22 20 38 38 H 1.09006 * 110.24698 * 78.29212 * 24 19 18 39 39 H 1.08993 * 110.49176 * 316.05682 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2686 0.0000 4 6 2.4486 1.7037 -1.4208 5 1 2.0980 1.0957 -2.2417 6 6 3.1270 2.8773 -1.6728 7 7 3.5544 3.6174 -0.6732 8 14 3.4389 3.4162 -3.4340 9 1 2.1416 3.5941 -4.1344 10 1 4.1814 4.7023 -3.4341 11 1 4.2412 2.3808 -4.1337 12 6 2.1388 -1.1673 -0.0005 13 8 3.3490 -1.1694 0.0914 14 6 1.3966 -2.4576 -0.1140 15 8 0.9329 -2.9803 0.8782 16 6 1.2269 -3.0968 -1.4313 17 6 1.6643 -2.4472 -2.5909 18 6 1.5015 -3.0532 -3.8165 19 6 0.9072 -4.3038 -3.9093 20 6 0.4718 -4.9528 -2.7661 21 6 0.6275 -4.3556 -1.5305 22 6 -0.1340 -6.2898 -3.1371 23 6 -0.4199 -6.1980 -4.6509 24 6 0.6187 -5.1611 -5.1275 25 1 -0.3634 -0.0925 1.0234 26 1 -0.3633 0.9326 -0.4315 27 1 -0.3634 -0.8400 -0.5919 28 1 1.6085 2.0283 0.5138 29 1 3.1499 1.1383 0.5138 30 1 4.0319 4.4429 -0.8505 31 1 2.1287 -1.4744 -2.5247 32 1 1.8394 -2.5523 -4.7116 33 1 0.2879 -4.8629 -0.6396 34 1 -1.0606 -6.4510 -2.5862 35 1 0.5713 -7.0957 -2.9336 36 1 -0.2568 -7.1608 -5.1350 37 1 -1.4339 -5.8417 -4.8326 38 1 1.5279 -5.6621 -5.4600 39 1 0.2049 -4.5536 -5.9323 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000194218792.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:32 Heat of formation + Delta-G solvation = -45.918757 kcal Electronic energy + Delta-G solvation = -22243.951437 eV Core-core repulsion = 18923.427246 eV Total energy + Delta-G solvation = -3320.524190 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 287.131 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.61346 -39.54277 -37.82180 -35.63990 -35.03762 -32.66559 -31.59982 -29.84024 -28.12419 -27.58712 -26.32442 -24.99140 -22.96538 -22.18584 -21.04002 -20.84940 -18.39543 -17.10724 -16.67291 -16.36678 -15.97726 -15.71666 -15.56200 -15.02348 -14.53779 -14.25566 -13.83095 -13.76805 -13.39104 -13.13647 -13.10361 -12.63150 -12.46228 -12.22322 -12.08809 -11.97952 -11.69933 -11.46064 -11.28504 -11.11152 -11.04852 -10.98281 -10.84052 -10.63313 -10.23635 -9.75188 -8.93900 -8.83917 -8.65770 -8.50500 -7.84587 -6.11687 -4.17936 0.55556 1.31900 2.24851 2.95785 3.27185 3.32336 3.34031 3.44076 3.69340 4.17400 4.29102 4.34982 4.50793 4.72114 4.86331 4.89002 5.02704 5.04228 5.22906 5.32811 5.43115 5.43995 5.53860 5.55603 5.58902 5.67089 5.84177 5.86121 5.89269 5.99905 6.12714 6.28243 6.31230 6.45151 6.81302 6.87019 7.29797 7.32570 7.36921 7.82436 8.11522 8.13058 8.61297 8.86590 9.47191 10.96560 Molecular weight = 287.13amu Principal moments of inertia in cm(-1) A = 0.017714 B = 0.004708 C = 0.003944 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1580.324762 B = 5945.672156 C = 7098.001113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.583 5.583 3 C 0.242 3.758 4 C -0.533 4.533 5 H 0.059 0.941 6 C 0.064 3.936 7 N -0.892 5.892 8 Si 0.899 3.101 9 H -0.276 1.276 10 H -0.285 1.285 11 H -0.275 1.275 12 C 0.485 3.515 13 O -0.514 6.514 14 C 0.401 3.599 15 O -0.434 6.434 16 C -0.164 4.164 17 C -0.053 4.053 18 C -0.119 4.119 19 C -0.064 4.064 20 C -0.119 4.119 21 C -0.044 4.044 22 C -0.079 4.079 23 C -0.121 4.121 24 C -0.086 4.086 25 H 0.052 0.948 26 H 0.085 0.915 27 H 0.053 0.947 28 H 0.039 0.961 29 H 0.048 0.952 30 H 0.265 0.735 31 H 0.143 0.857 32 H 0.130 0.870 33 H 0.132 0.868 34 H 0.076 0.924 35 H 0.080 0.920 36 H 0.077 0.923 37 H 0.073 0.927 38 H 0.084 0.916 39 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.803 -16.796 -7.872 20.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.316 5.316 3 C 0.123 3.877 4 C -0.572 4.572 5 H 0.077 0.923 6 C -0.139 4.139 7 N -0.530 5.530 8 Si 0.726 3.274 9 H -0.201 1.201 10 H -0.211 1.211 11 H -0.201 1.201 12 C 0.268 3.732 13 O -0.391 6.391 14 C 0.274 3.726 15 O -0.306 6.306 16 C -0.166 4.166 17 C -0.071 4.071 18 C -0.137 4.137 19 C -0.064 4.064 20 C -0.119 4.119 21 C -0.062 4.062 22 C -0.116 4.116 23 C -0.158 4.158 24 C -0.123 4.123 25 H 0.071 0.929 26 H 0.104 0.896 27 H 0.072 0.928 28 H 0.057 0.943 29 H 0.066 0.934 30 H 0.075 0.925 31 H 0.161 0.839 32 H 0.147 0.853 33 H 0.150 0.850 34 H 0.094 0.906 35 H 0.098 0.902 36 H 0.095 0.905 37 H 0.092 0.908 38 H 0.102 0.898 39 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -9.314 -16.864 -7.224 20.575 hybrid contribution 0.256 0.561 -0.943 1.127 sum -9.059 -16.303 -8.167 20.360 Atomic orbital electron populations 1.21750 0.80716 1.03144 1.00949 1.48243 1.06629 1.07329 1.69443 1.19459 0.92862 0.77407 0.97943 1.21339 1.37214 1.06697 0.91903 0.92298 1.24930 0.95167 0.96261 0.97529 1.69918 1.37847 1.14334 1.30894 0.86550 0.78425 0.77976 0.84453 1.20144 1.21097 1.20065 1.20354 0.88452 0.85106 0.79277 1.90788 1.12719 1.86211 1.49401 1.22778 0.75011 0.86513 0.88311 1.90548 1.37763 1.63239 1.39073 1.20154 1.05534 0.96885 0.94020 1.21585 0.94437 0.99831 0.91236 1.20625 1.00618 0.94486 0.97950 1.21015 0.95629 0.93968 0.95822 1.20473 1.01414 0.97168 0.92882 1.20762 0.95198 0.93045 0.97178 1.21025 1.00618 0.93832 0.96144 1.22289 0.99295 0.99189 0.95026 1.21190 0.99623 0.96099 0.95392 0.92929 0.89618 0.92834 0.94343 0.93376 0.92484 0.83947 0.85253 0.85041 0.90575 0.90154 0.90470 0.90840 0.89796 0.90244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.32 10.23 59.84 0.61 1.93 16 2 N -0.58 -12.68 2.86 -183.54 -0.52 -13.20 16 3 C 0.24 6.22 5.18 -5.20 -0.03 6.20 16 4 C -0.53 -14.48 9.39 -34.44 -0.32 -14.80 16 5 H 0.06 1.55 7.81 -52.49 -0.41 1.14 16 6 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 7 N -0.89 -25.88 13.29 55.43 0.74 -25.14 16 8 Si 0.90 21.03 29.54 -169.99 -5.02 16.00 16 9 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 10 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 11 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 12 C 0.49 10.76 6.10 -11.66 -0.07 10.69 16 13 O -0.51 -13.32 16.65 5.48 0.09 -13.23 16 14 C 0.40 7.54 5.11 -31.25 -0.16 7.38 16 15 O -0.43 -8.40 17.11 5.49 0.09 -8.31 16 16 C -0.16 -2.66 5.88 -104.96 -0.62 -3.28 16 17 C -0.05 -0.83 9.47 -39.15 -0.37 -1.20 16 18 C -0.12 -1.56 10.02 -39.58 -0.40 -1.95 16 19 C -0.06 -0.74 6.15 -103.83 -0.64 -1.38 16 20 C -0.12 -1.40 6.12 -104.23 -0.64 -2.04 16 21 C -0.04 -0.60 9.60 -39.05 -0.37 -0.97 16 22 C -0.08 -0.66 6.77 -26.84 -0.18 -0.84 16 23 C -0.12 -0.83 7.06 -25.35 -0.18 -1.01 16 24 C -0.09 -0.70 6.79 -26.69 -0.18 -0.88 16 25 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 26 H 0.09 1.39 8.03 -51.93 -0.42 0.97 16 27 H 0.05 0.81 6.99 -51.93 -0.36 0.44 16 28 H 0.04 0.99 8.07 -51.93 -0.42 0.58 16 29 H 0.05 1.40 7.36 -51.93 -0.38 1.01 16 30 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 31 H 0.14 2.53 7.16 -52.49 -0.38 2.16 16 32 H 0.13 1.45 8.06 -52.49 -0.42 1.03 16 33 H 0.13 1.68 7.66 -52.48 -0.40 1.28 16 34 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.08 0.60 8.14 -51.92 -0.42 0.18 16 36 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 37 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 38 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 LS Contribution 336.53 15.07 5.07 5.07 Total: -1.00 -32.26 336.53 -8.48 -40.74 By element: Atomic # 1 Polarization: 3.84 SS G_CDS: -5.29 Total: -1.45 kcal Atomic # 6 Polarization: 3.15 SS G_CDS: -3.64 Total: -0.50 kcal Atomic # 7 Polarization: -38.55 SS G_CDS: 0.21 Total: -38.34 kcal Atomic # 8 Polarization: -21.72 SS G_CDS: 0.19 Total: -21.53 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -32.26 -8.48 -40.74 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194218792.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.180 kcal (2) G-P(sol) polarization free energy of solvation -32.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.739 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds