Wall clock time and date at job start Tue Mar 31 2020 06:36:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.46495 * 120.00383 * 2 1 4 4 C 1.50702 * 109.47005 * 270.00211 * 3 2 1 5 5 H 1.07993 * 119.99948 * 359.97438 * 4 3 2 6 6 C 1.37878 * 119.99769 * 180.02562 * 4 3 2 7 7 N 1.31515 * 120.00334 * 359.97438 * 6 4 3 8 8 Si 1.86807 * 119.99697 * 179.97438 * 6 4 3 9 9 H 1.48499 * 109.47115 * 59.99883 * 8 6 4 10 10 H 1.48504 * 109.47049 * 179.97438 * 8 6 4 11 11 H 1.48501 * 109.46979 * 299.99889 * 8 6 4 12 12 C 1.34785 * 119.99767 * 180.02562 * 2 1 3 13 13 O 1.21365 * 119.99796 * 185.01493 * 12 2 1 14 14 C 1.49292 * 119.99867 * 5.00963 * 12 2 1 15 15 O 1.21355 * 120.00531 * 275.22880 * 14 12 2 16 16 C 1.47401 * 119.99782 * 95.22901 * 14 12 2 17 17 C 1.39926 * 120.21678 * 354.84508 * 16 14 12 18 18 C 1.37695 * 119.75740 * 179.97438 * 17 16 14 19 19 C 1.38771 * 120.44720 * 359.97438 * 18 17 16 20 20 C 1.38474 * 120.12301 * 0.02562 * 19 18 17 21 21 C 1.38122 * 120.02901 * 0.04891 * 20 19 18 22 22 C 1.51400 * 109.72190 * 180.02562 * 20 19 18 23 23 C 1.54329 * 105.18197 * 342.77926 * 22 20 19 24 24 C 1.51732 * 130.10923 * 179.84668 * 19 18 17 25 25 H 1.08997 * 109.47539 * 264.83357 * 1 2 3 26 26 H 1.08997 * 109.47112 * 24.83068 * 1 2 3 27 27 H 1.08996 * 109.47413 * 144.82789 * 1 2 3 28 28 H 1.08998 * 109.47286 * 29.99757 * 3 2 1 29 29 H 1.08995 * 109.47191 * 149.99988 * 3 2 1 30 30 H 0.96994 * 120.00013 * 179.97438 * 7 6 4 31 31 H 1.07999 * 120.12370 * 0.02562 * 17 16 14 32 32 H 1.07997 * 119.77645 * 180.02562 * 18 17 16 33 33 H 1.08003 * 119.96267 * 180.02562 * 21 20 19 34 34 H 1.08996 * 110.30088 * 223.84435 * 22 20 19 35 35 H 1.09008 * 110.38126 * 101.74577 * 22 20 19 36 36 H 1.08993 * 110.81860 * 144.67159 * 23 22 20 37 37 H 1.09005 * 110.81184 * 268.00328 * 23 22 20 38 38 H 1.09006 * 110.24698 * 78.29212 * 24 19 18 39 39 H 1.08993 * 110.49176 * 316.05682 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2686 0.0000 4 6 2.4486 1.7037 -1.4208 5 1 2.0980 1.0957 -2.2417 6 6 3.1270 2.8773 -1.6728 7 7 3.5544 3.6174 -0.6732 8 14 3.4389 3.4162 -3.4340 9 1 2.1416 3.5941 -4.1344 10 1 4.1814 4.7023 -3.4341 11 1 4.2412 2.3808 -4.1337 12 6 2.1388 -1.1673 -0.0005 13 8 3.3490 -1.1694 0.0914 14 6 1.3966 -2.4576 -0.1140 15 8 0.9329 -2.9803 0.8782 16 6 1.2269 -3.0968 -1.4313 17 6 1.6643 -2.4472 -2.5909 18 6 1.5015 -3.0532 -3.8165 19 6 0.9072 -4.3038 -3.9093 20 6 0.4718 -4.9528 -2.7661 21 6 0.6275 -4.3556 -1.5305 22 6 -0.1340 -6.2898 -3.1371 23 6 -0.4199 -6.1980 -4.6509 24 6 0.6187 -5.1611 -5.1275 25 1 -0.3634 -0.0925 1.0234 26 1 -0.3633 0.9326 -0.4315 27 1 -0.3634 -0.8400 -0.5919 28 1 1.6085 2.0283 0.5138 29 1 3.1499 1.1383 0.5138 30 1 4.0319 4.4429 -0.8505 31 1 2.1287 -1.4744 -2.5247 32 1 1.8394 -2.5523 -4.7116 33 1 0.2879 -4.8629 -0.6396 34 1 -1.0606 -6.4510 -2.5862 35 1 0.5713 -7.0957 -2.9336 36 1 -0.2568 -7.1608 -5.1350 37 1 -1.4339 -5.8417 -4.8326 38 1 1.5279 -5.6621 -5.4600 39 1 0.2049 -4.5536 -5.9323 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000194218792.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:31 Heat of formation + Delta-G solvation = -64.594460 kcal Electronic energy + Delta-G solvation = -22244.761276 eV Core-core repulsion = 18923.427246 eV Total energy + Delta-G solvation = -3321.334030 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 287.131 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.97559 -40.76612 -39.45442 -36.90201 -36.56066 -34.75354 -32.59048 -30.97648 -29.96617 -28.41351 -27.84629 -26.62563 -24.60204 -23.27923 -22.26843 -21.72237 -19.91540 -18.80214 -18.49076 -17.92133 -17.54579 -16.75686 -16.54272 -16.34402 -16.06011 -15.84138 -15.32070 -15.15887 -14.72338 -14.37950 -14.17440 -13.99755 -13.70616 -13.63915 -13.56451 -13.23207 -13.01665 -12.89093 -12.62939 -12.56490 -12.49077 -12.20738 -12.02291 -11.89852 -11.77841 -11.69251 -10.65132 -10.54825 -9.98968 -9.70297 -9.63633 -8.24375 -6.39701 -0.68373 0.27829 0.92725 1.21993 1.40131 1.43499 1.51128 1.79612 2.38045 2.59018 2.88521 3.07338 3.42099 3.48924 3.64349 3.88908 4.13010 4.15474 4.17569 4.25361 4.28691 4.48917 4.60433 4.67556 4.74275 4.85575 4.87783 4.96317 4.97309 5.10065 5.13660 5.15272 5.18837 5.29741 5.39621 5.41016 5.47688 5.70459 5.80371 5.85656 5.98692 6.31715 6.65831 6.88762 7.30853 8.83891 Molecular weight = 287.13amu Principal moments of inertia in cm(-1) A = 0.017714 B = 0.004708 C = 0.003944 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1580.324762 B = 5945.672156 C = 7098.001113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.586 5.586 3 C 0.255 3.745 4 C -0.546 4.546 5 H 0.063 0.937 6 C 0.010 3.990 7 N -0.928 5.928 8 Si 0.969 3.031 9 H -0.258 1.258 10 H -0.281 1.281 11 H -0.273 1.273 12 C 0.477 3.523 13 O -0.565 6.565 14 C 0.414 3.586 15 O -0.445 6.445 16 C -0.184 4.184 17 C -0.071 4.071 18 C -0.122 4.122 19 C -0.056 4.056 20 C -0.118 4.118 21 C -0.044 4.044 22 C -0.080 4.080 23 C -0.114 4.114 24 C -0.086 4.086 25 H 0.071 0.929 26 H 0.093 0.907 27 H 0.074 0.926 28 H 0.034 0.966 29 H 0.004 0.996 30 H 0.268 0.732 31 H 0.112 0.888 32 H 0.146 0.854 33 H 0.139 0.861 34 H 0.088 0.912 35 H 0.093 0.907 36 H 0.101 0.899 37 H 0.079 0.921 38 H 0.099 0.901 39 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.730 -19.085 -10.912 24.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.317 5.317 3 C 0.134 3.866 4 C -0.584 4.584 5 H 0.081 0.919 6 C -0.189 4.189 7 N -0.567 5.567 8 Si 0.793 3.207 9 H -0.182 1.182 10 H -0.206 1.206 11 H -0.198 1.198 12 C 0.262 3.738 13 O -0.446 6.446 14 C 0.289 3.711 15 O -0.319 6.319 16 C -0.186 4.186 17 C -0.089 4.089 18 C -0.140 4.140 19 C -0.056 4.056 20 C -0.118 4.118 21 C -0.062 4.062 22 C -0.117 4.117 23 C -0.151 4.151 24 C -0.123 4.123 25 H 0.090 0.910 26 H 0.111 0.889 27 H 0.093 0.907 28 H 0.052 0.948 29 H 0.022 0.978 30 H 0.077 0.923 31 H 0.130 0.870 32 H 0.164 0.836 33 H 0.157 0.843 34 H 0.107 0.893 35 H 0.111 0.889 36 H 0.120 0.880 37 H 0.098 0.902 38 H 0.117 0.883 39 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -11.297 -19.165 -10.265 24.502 hybrid contribution 0.832 1.202 -0.011 1.461 sum -10.466 -17.964 -10.277 23.191 Atomic orbital electron populations 1.22005 0.77568 1.04483 1.02716 1.48251 1.08585 1.06112 1.68800 1.19013 0.91338 0.79065 0.97148 1.21613 1.37435 1.06971 0.92400 0.91899 1.25876 0.94645 0.96228 1.02149 1.70050 1.38538 1.14822 1.33325 0.85439 0.78973 0.77422 0.78867 1.18240 1.20619 1.19825 1.21121 0.88202 0.86478 0.77998 1.90737 1.15015 1.87207 1.51613 1.22457 0.74268 0.84729 0.89679 1.90535 1.38667 1.63000 1.39663 1.19901 1.08207 0.98312 0.92133 1.21406 0.95730 0.99174 0.92602 1.20805 1.00562 0.95356 0.97288 1.21527 0.93266 0.93123 0.97688 1.20954 1.00326 0.98653 0.91916 1.20874 0.94698 0.91965 0.98666 1.21176 1.01218 0.91791 0.97483 1.22336 0.99145 0.99971 0.93685 1.21353 1.00863 0.96040 0.94048 0.91024 0.88867 0.90744 0.94847 0.97812 0.92279 0.86990 0.83588 0.84273 0.89345 0.88855 0.88046 0.90198 0.88303 0.88801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 2.51 10.23 127.77 1.31 3.82 16 2 N -0.59 -26.60 2.86 -852.95 -2.44 -29.04 16 3 C 0.25 13.84 5.18 85.63 0.44 14.29 16 4 C -0.55 -30.63 9.39 25.60 0.24 -30.39 16 5 H 0.06 3.40 7.81 -2.91 -0.02 3.37 16 6 C 0.01 0.59 5.46 84.65 0.46 1.05 16 7 N -0.93 -55.43 13.29 21.45 0.28 -55.14 16 8 Si 0.97 43.39 29.54 68.60 2.03 45.41 16 9 H -0.26 -10.76 7.11 99.48 0.71 -10.05 16 10 H -0.28 -12.29 7.11 99.48 0.71 -11.59 16 11 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 12 C 0.48 22.34 6.10 87.22 0.53 22.87 16 13 O -0.57 -31.39 16.65 -3.29 -0.05 -31.44 16 14 C 0.41 16.05 5.11 27.66 0.14 16.19 16 15 O -0.44 -17.47 17.11 -3.26 -0.06 -17.53 16 16 C -0.18 -6.00 5.88 -20.09 -0.12 -6.12 16 17 C -0.07 -2.27 9.47 22.55 0.21 -2.06 16 18 C -0.12 -3.04 10.02 22.27 0.22 -2.81 16 19 C -0.06 -1.12 6.15 -19.35 -0.12 -1.24 16 20 C -0.12 -2.44 6.12 -19.61 -0.12 -2.56 16 21 C -0.04 -1.15 9.60 22.61 0.22 -0.93 16 22 C -0.08 -0.99 6.77 30.52 0.21 -0.78 16 23 C -0.11 -0.99 7.06 31.49 0.22 -0.77 16 24 C -0.09 -1.02 6.79 30.62 0.21 -0.81 16 25 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 26 H 0.09 3.00 8.03 -2.39 -0.02 2.99 16 27 H 0.07 2.21 6.99 -2.39 -0.02 2.20 16 28 H 0.03 1.82 8.07 -2.39 -0.02 1.80 16 29 H 0.00 0.23 7.36 -2.39 -0.02 0.22 16 30 H 0.27 15.05 8.31 -92.71 -0.77 14.28 16 31 H 0.11 4.24 7.16 -2.91 -0.02 4.22 16 32 H 0.15 3.03 8.06 -2.91 -0.02 3.01 16 33 H 0.14 3.36 7.66 -2.91 -0.02 3.34 16 34 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 35 H 0.09 0.98 8.14 -2.38 -0.02 0.96 16 36 H 0.10 0.47 8.14 -2.39 -0.02 0.45 16 37 H 0.08 0.63 8.14 -2.38 -0.02 0.62 16 38 H 0.10 0.96 8.14 -2.38 -0.02 0.94 16 39 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 Total: -1.00 -73.51 336.53 4.88 -68.63 By element: Atomic # 1 Polarization: 8.31 SS G_CDS: 1.05 Total: 9.36 kcal Atomic # 6 Polarization: 5.69 SS G_CDS: 4.06 Total: 9.75 kcal Atomic # 7 Polarization: -82.03 SS G_CDS: -2.15 Total: -84.18 kcal Atomic # 8 Polarization: -48.86 SS G_CDS: -0.11 Total: -48.97 kcal Atomic # 14 Polarization: 43.39 SS G_CDS: 2.03 Total: 45.41 kcal Total: -73.51 4.88 -68.63 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194218792.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.037 kcal (2) G-P(sol) polarization free energy of solvation -73.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.631 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds