Wall clock time and date at job start Tue Mar 31 2020 06:21:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17394 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 N 1.46494 * 109.47242 * 129.84976 * 3 2 1 5 5 C 1.46495 * 120.00334 * 270.00171 * 4 3 2 6 6 C 1.53006 * 109.47149 * 269.99646 * 5 4 3 7 7 C 1.34784 * 119.99938 * 89.99642 * 4 3 2 8 8 O 1.21287 * 119.99845 * 0.02562 * 7 4 3 9 9 C 1.50701 * 119.99892 * 180.02562 * 7 4 3 10 10 C 1.50699 * 109.46735 * 180.02562 * 9 7 4 11 11 C 1.38305 * 119.93408 * 89.99836 * 10 9 7 12 12 C 1.38101 * 120.07071 * 179.97438 * 11 10 9 13 13 C 1.38876 * 119.92956 * 0.02562 * 12 11 10 14 14 O 1.35750 * 120.06861 * 180.02562 * 13 12 11 15 15 C 1.34828 * 117.00075 * 5.53840 * 14 13 12 16 16 H 1.08003 * 120.00029 * 354.94359 * 15 14 13 17 17 C 1.38659 * 120.00122 * 174.94542 * 15 14 13 18 18 N 1.31558 * 119.99705 * 180.02562 * 17 15 14 19 19 Si 1.86795 * 120.00035 * 359.97438 * 17 15 14 20 20 H 1.48498 * 109.47181 * 89.99980 * 19 17 15 21 21 H 1.48498 * 109.47260 * 210.00361 * 19 17 15 22 22 H 1.48502 * 109.47130 * 330.00179 * 19 17 15 23 23 C 1.38880 * 119.86555 * 0.27954 * 13 12 11 24 24 C 1.38102 * 119.92551 * 359.44514 * 23 13 12 25 25 H 4.40643 * 5.51469 * 179.97438 * 4 1 2 26 26 H 1.09002 * 109.47403 * 9.85183 * 3 2 1 27 27 H 1.09005 * 109.47022 * 249.85263 * 3 2 1 28 28 H 1.09003 * 109.47274 * 29.99395 * 5 4 3 29 29 H 1.09004 * 109.47669 * 149.99656 * 5 4 3 30 30 H 1.09003 * 109.47349 * 300.00080 * 6 5 4 31 31 H 1.09006 * 109.46642 * 60.00008 * 6 5 4 32 32 H 1.09000 * 109.47422 * 179.97438 * 6 5 4 33 33 H 1.08986 * 109.47293 * 59.99986 * 9 7 4 34 34 H 1.09005 * 109.47046 * 299.99669 * 9 7 4 35 35 H 1.07999 * 119.96326 * 0.02562 * 11 10 9 36 36 H 1.07997 * 120.03156 * 180.02562 * 12 11 10 37 37 H 0.96997 * 119.99350 * 179.97438 * 18 17 15 38 38 H 1.07996 * 120.04097 * 179.72435 * 23 13 12 39 39 H 1.07997 * 119.96688 * 180.27743 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 7 3.1339 0.8859 -1.0603 5 6 3.3783 0.3546 -2.4035 6 6 4.8236 -0.1379 -2.5020 7 6 3.3579 2.1893 -0.8002 8 8 3.1559 2.6291 0.3119 9 6 3.8593 3.1000 -1.8911 10 6 4.0267 4.4942 -1.3441 11 6 5.2336 4.8769 -0.7876 12 6 5.3904 6.1539 -0.2859 13 6 4.3342 7.0541 -0.3401 14 8 4.4853 8.3104 0.1517 15 6 5.7175 8.6582 0.5744 16 1 6.5103 7.9249 0.5892 17 6 5.9669 9.9572 0.9900 18 7 7.1694 10.2967 1.4019 19 14 4.5960 11.2257 0.9638 20 1 3.8823 11.2102 2.2660 21 1 5.1734 12.5740 0.7318 22 1 3.6422 10.9013 -0.1272 23 6 3.1215 6.6649 -0.8938 24 6 2.9729 5.3882 -1.3989 25 1 -1.0502 -0.0003 0.0001 26 1 3.0098 -1.0117 -0.1758 27 1 3.0091 0.3548 0.9648 28 1 2.6979 -0.4751 -2.5954 29 1 3.2109 1.1397 -3.1409 30 1 5.5040 0.6918 -2.3101 31 1 4.9909 -0.9231 -1.7646 32 1 5.0053 -0.5336 -3.5012 33 1 3.1411 3.1148 -2.7108 34 1 4.8196 2.7355 -2.2560 35 1 6.0547 4.1765 -0.7461 36 1 6.3332 6.4522 0.1482 37 1 7.3439 11.2055 1.6923 38 1 2.2970 7.3612 -0.9334 39 1 2.0316 5.0863 -1.8337 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000264695050.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:11 Heat of formation + Delta-G solvation = 20.859406 kcal Electronic energy + Delta-G solvation = -21582.431872 eV Core-core repulsion = 18264.803400 eV Total energy + Delta-G solvation = -3317.628472 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 287.131 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.17024 -38.99110 -36.85668 -36.11592 -33.69834 -32.44990 -31.49288 -30.71502 -30.19220 -27.98899 -26.18577 -24.76637 -23.56624 -22.04823 -20.87635 -19.46619 -18.21094 -17.84352 -17.22713 -17.15431 -16.54029 -15.59240 -14.84616 -14.64158 -14.23136 -14.08157 -13.94524 -13.69124 -13.66311 -13.54200 -13.38762 -12.86364 -12.63065 -12.44474 -12.23947 -12.14526 -11.73499 -11.37724 -11.26498 -10.88638 -10.81003 -10.73965 -10.61647 -10.35737 -10.11329 -9.68567 -9.34146 -9.02677 -8.82269 -8.18702 -7.26040 -6.37947 -4.04172 2.10207 2.20719 2.37303 2.64768 2.70222 3.24525 3.27142 3.29111 3.43412 4.19915 4.27342 4.39923 4.57377 4.73827 4.87506 4.90261 5.03837 5.07062 5.13633 5.21300 5.26964 5.37444 5.46863 5.49767 5.61282 5.69729 5.73994 5.79958 5.88391 6.17896 6.29535 6.37843 6.61168 6.84270 7.05970 7.23702 7.27295 7.35290 7.41186 7.66336 7.84724 8.08255 8.22000 8.97571 9.60758 10.69849 Molecular weight = 287.13amu Principal moments of inertia in cm(-1) A = 0.028490 B = 0.003221 C = 0.003074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 982.565953 B = 8690.835576 C = 9107.803230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.202 4.202 3 C 0.222 3.778 4 N -0.620 5.620 5 C 0.105 3.895 6 C -0.174 4.174 7 C 0.513 3.487 8 O -0.514 6.514 9 C -0.079 4.079 10 C -0.162 4.162 11 C -0.058 4.058 12 C -0.219 4.219 13 C 0.163 3.837 14 O -0.218 6.218 15 C -0.388 4.388 16 H 0.106 0.894 17 C 0.063 3.937 18 N -0.881 5.881 19 Si 0.906 3.094 20 H -0.273 1.273 21 H -0.283 1.283 22 H -0.259 1.259 23 C -0.191 4.191 24 C -0.062 4.062 25 H 0.216 0.784 26 H 0.098 0.902 27 H 0.106 0.894 28 H 0.077 0.923 29 H 0.083 0.917 30 H 0.062 0.938 31 H 0.058 0.942 32 H 0.068 0.932 33 H 0.092 0.908 34 H 0.094 0.906 35 H 0.107 0.893 36 H 0.133 0.867 37 H 0.279 0.721 38 H 0.116 0.884 39 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.961 -21.679 -9.313 24.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.203 4.203 3 C 0.100 3.900 4 N -0.355 5.355 5 C -0.018 4.018 6 C -0.232 4.232 7 C 0.302 3.698 8 O -0.387 6.387 9 C -0.119 4.119 10 C -0.164 4.164 11 C -0.076 4.076 12 C -0.238 4.238 13 C 0.111 3.889 14 O -0.123 6.123 15 C -0.464 4.464 16 H 0.124 0.876 17 C -0.140 4.140 18 N -0.519 5.519 19 Si 0.731 3.269 20 H -0.199 1.199 21 H -0.208 1.208 22 H -0.183 1.183 23 C -0.210 4.210 24 C -0.080 4.080 25 H 0.233 0.767 26 H 0.116 0.884 27 H 0.124 0.876 28 H 0.095 0.905 29 H 0.101 0.899 30 H 0.081 0.919 31 H 0.077 0.923 32 H 0.087 0.913 33 H 0.111 0.889 34 H 0.112 0.888 35 H 0.125 0.875 36 H 0.151 0.849 37 H 0.089 0.911 38 H 0.134 0.866 39 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -8.042 -21.036 -8.585 24.102 hybrid contribution -0.571 0.435 0.090 0.723 sum -8.612 -20.601 -8.495 23.890 Atomic orbital electron populations 1.24955 0.95969 1.00299 0.99894 1.23659 0.95069 1.00650 1.00923 1.18231 0.83489 0.94837 0.93406 1.48129 1.67076 1.09107 1.11236 1.21591 0.96907 0.99856 0.83458 1.22244 0.96618 1.02022 1.02310 1.21114 0.76919 0.81436 0.90375 1.90752 1.49745 1.74302 1.23894 1.20481 1.02456 0.92645 0.96300 1.18726 0.95437 0.93731 1.08474 1.20555 0.95909 0.95183 0.95941 1.21220 1.00682 0.94228 1.07694 1.19120 0.93426 0.85156 0.91244 1.83568 1.33281 1.25799 1.69679 1.20780 0.85046 0.97722 1.42842 0.87631 1.24464 0.97028 0.96901 0.95625 1.69650 1.19906 1.20426 1.41936 0.86176 0.81603 0.79428 0.79678 1.19890 1.20847 1.18343 1.20145 0.96698 0.97313 1.06861 1.20396 0.96875 0.92551 0.98173 0.76683 0.88427 0.87563 0.90462 0.89889 0.91909 0.92273 0.91319 0.88937 0.88750 0.87541 0.84949 0.91099 0.86562 0.87292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.95 19.25 29.55 0.57 -1.38 16 2 C -0.20 -2.25 13.68 -37.12 -0.51 -2.76 16 3 C 0.22 2.20 5.88 -6.83 -0.04 2.16 16 4 N -0.62 -6.42 2.43 -177.02 -0.43 -6.85 16 5 C 0.10 0.70 5.93 -4.04 -0.02 0.67 16 6 C -0.17 -0.98 10.24 37.16 0.38 -0.60 16 7 C 0.51 7.21 7.66 -10.98 -0.08 7.13 16 8 O -0.51 -9.75 15.61 5.55 0.09 -9.66 16 9 C -0.08 -0.99 4.38 -29.03 -0.13 -1.12 16 10 C -0.16 -2.80 4.38 -104.57 -0.46 -3.26 16 11 C -0.06 -1.09 9.69 -39.61 -0.38 -1.48 16 12 C -0.22 -4.94 9.17 -39.40 -0.36 -5.30 16 13 C 0.16 3.92 6.65 -39.11 -0.26 3.66 16 14 O -0.22 -5.95 8.59 0.05 0.00 -5.95 16 15 C -0.39 -11.22 9.95 30.89 0.31 -10.92 16 16 H 0.11 3.11 5.44 -52.48 -0.29 2.83 16 17 C 0.06 1.80 5.49 -17.51 -0.10 1.70 16 18 N -0.88 -25.90 13.96 55.48 0.77 -25.12 16 19 Si 0.91 22.15 28.62 -169.99 -4.86 17.29 16 20 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 21 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 22 H -0.26 -6.35 7.11 56.52 0.40 -5.95 16 23 C -0.19 -4.00 9.99 -39.39 -0.39 -4.40 16 24 C -0.06 -1.12 9.69 -39.61 -0.38 -1.50 16 25 H 0.22 1.43 7.80 -54.08 -0.42 1.01 16 26 H 0.10 0.64 8.07 -51.93 -0.42 0.22 16 27 H 0.11 1.20 7.42 -51.93 -0.39 0.82 16 28 H 0.08 0.42 8.07 -51.93 -0.42 0.00 16 29 H 0.08 0.49 6.44 -51.93 -0.33 0.16 16 30 H 0.06 0.42 7.22 -51.93 -0.38 0.05 16 31 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.07 0.29 8.14 -51.93 -0.42 -0.14 16 33 H 0.09 0.94 7.34 -51.94 -0.38 0.56 16 34 H 0.09 0.96 7.13 -51.93 -0.37 0.59 16 35 H 0.11 1.74 8.06 -52.49 -0.42 1.32 16 36 H 0.13 3.11 5.64 -52.49 -0.30 2.82 16 37 H 0.28 7.56 8.31 -40.82 -0.34 7.22 16 38 H 0.12 2.27 8.06 -52.49 -0.42 1.85 16 39 H 0.11 1.66 8.06 -52.49 -0.42 1.23 16 LS Contribution 341.91 15.07 5.15 5.15 Total: -1.00 -34.40 341.91 -6.08 -40.48 By element: Atomic # 1 Polarization: 6.99 SS G_CDS: -4.94 Total: 2.06 kcal Atomic # 6 Polarization: -15.52 SS G_CDS: -1.86 Total: -17.39 kcal Atomic # 7 Polarization: -32.32 SS G_CDS: 0.34 Total: -31.98 kcal Atomic # 8 Polarization: -15.71 SS G_CDS: 0.09 Total: -15.62 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -4.86 Total: 17.29 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -34.40 -6.08 -40.48 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264695050.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.343 kcal (2) G-P(sol) polarization free energy of solvation -34.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.483 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds