Wall clock time and date at job start Tue Mar 31 2020 06:21:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17394 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 N 1.46494 * 109.47242 * 129.84976 * 3 2 1 5 5 C 1.46495 * 120.00334 * 270.00171 * 4 3 2 6 6 C 1.53006 * 109.47149 * 269.99646 * 5 4 3 7 7 C 1.34784 * 119.99938 * 89.99642 * 4 3 2 8 8 O 1.21287 * 119.99845 * 0.02562 * 7 4 3 9 9 C 1.50701 * 119.99892 * 180.02562 * 7 4 3 10 10 C 1.50699 * 109.46735 * 180.02562 * 9 7 4 11 11 C 1.38305 * 119.93408 * 89.99836 * 10 9 7 12 12 C 1.38101 * 120.07071 * 179.97438 * 11 10 9 13 13 C 1.38876 * 119.92956 * 0.02562 * 12 11 10 14 14 O 1.35750 * 120.06861 * 180.02562 * 13 12 11 15 15 C 1.34828 * 117.00075 * 5.53840 * 14 13 12 16 16 H 1.08003 * 120.00029 * 354.94359 * 15 14 13 17 17 C 1.38659 * 120.00122 * 174.94542 * 15 14 13 18 18 N 1.31558 * 119.99705 * 180.02562 * 17 15 14 19 19 Si 1.86795 * 120.00035 * 359.97438 * 17 15 14 20 20 H 1.48498 * 109.47181 * 89.99980 * 19 17 15 21 21 H 1.48498 * 109.47260 * 210.00361 * 19 17 15 22 22 H 1.48502 * 109.47130 * 330.00179 * 19 17 15 23 23 C 1.38880 * 119.86555 * 0.27954 * 13 12 11 24 24 C 1.38102 * 119.92551 * 359.44514 * 23 13 12 25 25 H 4.40643 * 5.51469 * 179.97438 * 4 1 2 26 26 H 1.09002 * 109.47403 * 9.85183 * 3 2 1 27 27 H 1.09005 * 109.47022 * 249.85263 * 3 2 1 28 28 H 1.09003 * 109.47274 * 29.99395 * 5 4 3 29 29 H 1.09004 * 109.47669 * 149.99656 * 5 4 3 30 30 H 1.09003 * 109.47349 * 300.00080 * 6 5 4 31 31 H 1.09006 * 109.46642 * 60.00008 * 6 5 4 32 32 H 1.09000 * 109.47422 * 179.97438 * 6 5 4 33 33 H 1.08986 * 109.47293 * 59.99986 * 9 7 4 34 34 H 1.09005 * 109.47046 * 299.99669 * 9 7 4 35 35 H 1.07999 * 119.96326 * 0.02562 * 11 10 9 36 36 H 1.07997 * 120.03156 * 180.02562 * 12 11 10 37 37 H 0.96997 * 119.99350 * 179.97438 * 18 17 15 38 38 H 1.07996 * 120.04097 * 179.72435 * 23 13 12 39 39 H 1.07997 * 119.96688 * 180.27743 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 7 3.1339 0.8859 -1.0603 5 6 3.3783 0.3546 -2.4035 6 6 4.8236 -0.1379 -2.5020 7 6 3.3579 2.1893 -0.8002 8 8 3.1559 2.6291 0.3119 9 6 3.8593 3.1000 -1.8911 10 6 4.0267 4.4942 -1.3441 11 6 5.2336 4.8769 -0.7876 12 6 5.3904 6.1539 -0.2859 13 6 4.3342 7.0541 -0.3401 14 8 4.4853 8.3104 0.1517 15 6 5.7175 8.6582 0.5744 16 1 6.5103 7.9249 0.5892 17 6 5.9669 9.9572 0.9900 18 7 7.1694 10.2967 1.4019 19 14 4.5960 11.2257 0.9638 20 1 3.8823 11.2102 2.2660 21 1 5.1734 12.5740 0.7318 22 1 3.6422 10.9013 -0.1272 23 6 3.1215 6.6649 -0.8938 24 6 2.9729 5.3882 -1.3989 25 1 -1.0502 -0.0003 0.0001 26 1 3.0098 -1.0117 -0.1758 27 1 3.0091 0.3548 0.9648 28 1 2.6979 -0.4751 -2.5954 29 1 3.2109 1.1397 -3.1409 30 1 5.5040 0.6918 -2.3101 31 1 4.9909 -0.9231 -1.7646 32 1 5.0053 -0.5336 -3.5012 33 1 3.1411 3.1148 -2.7108 34 1 4.8196 2.7355 -2.2560 35 1 6.0547 4.1765 -0.7461 36 1 6.3332 6.4522 0.1482 37 1 7.3439 11.2055 1.6923 38 1 2.2970 7.3612 -0.9334 39 1 2.0316 5.0863 -1.8337 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000264695050.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:10 Heat of formation + Delta-G solvation = -0.232238 kcal Electronic energy + Delta-G solvation = -21583.346475 eV Core-core repulsion = 18264.803400 eV Total energy + Delta-G solvation = -3318.543074 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 287.131 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.31148 -40.62117 -38.43686 -37.16464 -34.60251 -34.37644 -32.87376 -31.82058 -31.35166 -29.18909 -27.63221 -26.39565 -24.22853 -23.70865 -22.37068 -20.48789 -19.80109 -19.10687 -18.98716 -18.06222 -17.43827 -16.81895 -16.34392 -16.16908 -15.76254 -15.58527 -15.20192 -14.93205 -14.81204 -14.63635 -14.35603 -14.16028 -14.13722 -14.03643 -13.43545 -13.06319 -12.92058 -12.73453 -12.52071 -12.41518 -12.30039 -11.93021 -11.88729 -11.63158 -11.28584 -11.12623 -10.94795 -10.74838 -9.87277 -9.79965 -8.99181 -8.51001 -6.23562 0.57329 0.59800 1.29993 1.34695 1.46585 1.50858 1.67551 1.87370 2.27549 2.42387 2.76911 3.04744 3.15343 3.51765 3.73688 3.91588 4.00960 4.11345 4.17174 4.35114 4.40549 4.46470 4.55624 4.61030 4.63708 4.68491 4.80230 4.94850 4.96518 5.05710 5.06862 5.24138 5.35672 5.45879 5.54608 5.57630 5.72638 5.78709 5.90170 6.22319 6.38625 6.64867 6.83219 7.21821 7.57846 8.60858 Molecular weight = 287.13amu Principal moments of inertia in cm(-1) A = 0.028490 B = 0.003221 C = 0.003074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 982.565953 B = 8690.835576 C = 9107.803230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.236 4.236 3 C 0.219 3.781 4 N -0.610 5.610 5 C 0.098 3.902 6 C -0.171 4.171 7 C 0.511 3.489 8 O -0.576 6.576 9 C -0.077 4.077 10 C -0.138 4.138 11 C -0.063 4.063 12 C -0.238 4.238 13 C 0.119 3.881 14 O -0.246 6.246 15 C -0.401 4.401 16 H 0.080 0.920 17 C 0.010 3.990 18 N -0.924 5.924 19 Si 0.972 3.028 20 H -0.268 1.268 21 H -0.264 1.264 22 H -0.262 1.262 23 C -0.194 4.194 24 C -0.060 4.060 25 H 0.243 0.757 26 H 0.132 0.868 27 H 0.084 0.916 28 H 0.095 0.905 29 H 0.098 0.902 30 H 0.052 0.948 31 H 0.057 0.943 32 H 0.088 0.912 33 H 0.131 0.869 34 H 0.126 0.874 35 H 0.133 0.867 36 H 0.107 0.893 37 H 0.285 0.715 38 H 0.128 0.872 39 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.156 -24.331 -11.816 28.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.238 4.238 3 C 0.097 3.903 4 N -0.342 5.342 5 C -0.023 4.023 6 C -0.229 4.229 7 C 0.301 3.699 8 O -0.455 6.455 9 C -0.116 4.116 10 C -0.139 4.139 11 C -0.081 4.081 12 C -0.257 4.257 13 C 0.070 3.930 14 O -0.154 6.154 15 C -0.477 4.477 16 H 0.097 0.903 17 C -0.188 4.188 18 N -0.565 5.565 19 Si 0.794 3.206 20 H -0.193 1.193 21 H -0.189 1.189 22 H -0.186 1.186 23 C -0.213 4.213 24 C -0.078 4.078 25 H 0.260 0.740 26 H 0.149 0.851 27 H 0.102 0.898 28 H 0.113 0.887 29 H 0.117 0.883 30 H 0.071 0.929 31 H 0.076 0.924 32 H 0.107 0.893 33 H 0.149 0.851 34 H 0.144 0.856 35 H 0.151 0.849 36 H 0.125 0.875 37 H 0.095 0.905 38 H 0.146 0.854 39 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -10.241 -23.774 -11.144 28.183 hybrid contribution 0.022 0.826 0.722 1.098 sum -10.219 -22.948 -10.422 27.197 Atomic orbital electron populations 1.25757 0.96933 0.99270 0.98675 1.24075 0.95886 1.01705 1.02089 1.18358 0.83287 0.96201 0.92459 1.48163 1.65319 1.07977 1.12788 1.21922 0.97998 1.00951 0.81453 1.22223 0.95507 1.01667 1.03530 1.21273 0.76397 0.82677 0.89596 1.90748 1.52851 1.75700 1.26180 1.20609 1.05381 0.89091 0.96554 1.19307 0.93850 0.95956 1.04811 1.20896 0.97925 0.94003 0.95302 1.21251 0.99643 0.95983 1.08800 1.19662 0.95340 0.84664 0.93299 1.83506 1.32052 1.27650 1.72156 1.20725 0.85574 0.97795 1.43603 0.90287 1.25292 0.99496 0.98719 0.95336 1.69731 1.21690 1.21322 1.43733 0.85204 0.78469 0.77368 0.79578 1.19270 1.18897 1.18642 1.20488 0.95673 0.98930 1.06179 1.20914 0.98719 0.91242 0.96952 0.74048 0.85055 0.89814 0.88710 0.88347 0.92882 0.92374 0.89326 0.85133 0.85605 0.84877 0.87470 0.90531 0.85435 0.83258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.33 19.25 74.32 1.43 -1.90 16 2 C -0.24 -4.79 13.68 31.13 0.43 -4.36 16 3 C 0.22 3.88 5.88 84.57 0.50 4.38 16 4 N -0.61 -10.65 2.43 -832.35 -2.02 -12.67 16 5 C 0.10 0.85 5.93 86.38 0.51 1.36 16 6 C -0.17 -1.22 10.24 71.98 0.74 -0.48 16 7 C 0.51 12.90 7.66 87.66 0.67 13.57 16 8 O -0.58 -21.29 15.61 -3.05 -0.05 -21.34 16 9 C -0.08 -1.58 4.38 29.10 0.13 -1.46 16 10 C -0.14 -4.38 4.38 -19.83 -0.09 -4.47 16 11 C -0.06 -2.35 9.69 22.25 0.22 -2.14 16 12 C -0.24 -11.21 9.17 22.39 0.21 -11.00 16 13 C 0.12 5.97 6.65 22.58 0.15 6.12 16 14 O -0.25 -14.09 8.59 -22.72 -0.20 -14.29 16 15 C -0.40 -24.65 9.95 67.92 0.68 -23.98 16 16 H 0.08 5.09 5.44 -2.91 -0.02 5.08 16 17 C 0.01 0.58 5.49 84.83 0.47 1.05 16 18 N -0.92 -56.72 13.96 21.61 0.30 -56.42 16 19 Si 0.97 46.98 28.62 68.60 1.96 48.95 16 20 H -0.27 -12.53 7.11 99.48 0.71 -11.83 16 21 H -0.26 -11.82 7.11 99.48 0.71 -11.11 16 22 H -0.26 -12.63 7.11 99.48 0.71 -11.92 16 23 C -0.19 -8.01 9.99 22.39 0.22 -7.79 16 24 C -0.06 -2.02 9.69 22.25 0.22 -1.80 16 25 H 0.24 2.47 7.80 -4.41 -0.03 2.43 16 26 H 0.13 1.34 8.07 -2.39 -0.02 1.33 16 27 H 0.08 1.88 7.42 -2.38 -0.02 1.86 16 28 H 0.09 0.57 8.07 -2.39 -0.02 0.55 16 29 H 0.10 0.59 6.44 -2.38 -0.02 0.57 16 30 H 0.05 0.50 7.22 -2.39 -0.02 0.48 16 31 H 0.06 0.44 8.14 -2.38 -0.02 0.42 16 32 H 0.09 0.32 8.14 -2.39 -0.02 0.30 16 33 H 0.13 1.79 7.34 -2.39 -0.02 1.77 16 34 H 0.13 1.88 7.13 -2.38 -0.02 1.87 16 35 H 0.13 4.15 8.06 -2.91 -0.02 4.13 16 36 H 0.11 5.51 5.64 -2.91 -0.02 5.50 16 37 H 0.29 15.99 8.31 -92.71 -0.77 15.22 16 38 H 0.13 4.88 8.06 -2.91 -0.02 4.85 16 39 H 0.15 3.81 8.06 -2.91 -0.02 3.79 16 Total: -1.00 -80.89 341.91 7.52 -73.37 By element: Atomic # 1 Polarization: 14.25 SS G_CDS: 1.05 Total: 15.30 kcal Atomic # 6 Polarization: -39.37 SS G_CDS: 6.47 Total: -32.90 kcal Atomic # 7 Polarization: -67.37 SS G_CDS: -1.72 Total: -69.09 kcal Atomic # 8 Polarization: -35.38 SS G_CDS: -0.24 Total: -35.63 kcal Atomic # 14 Polarization: 46.98 SS G_CDS: 1.96 Total: 48.95 kcal Total: -80.89 7.52 -73.37 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264695050.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.142 kcal (2) G-P(sol) polarization free energy of solvation -80.891 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.374 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds