Wall clock time and date at job start Tue Mar 31 2020 06:23:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47193 * 179.97438 * 2 1 4 4 O 1.42904 * 109.46861 * 136.95099 * 3 2 1 5 5 C 1.35712 * 116.99728 * 179.97438 * 4 3 2 6 6 C 1.38993 * 119.91627 * 359.73276 * 5 4 3 7 7 C 1.37699 * 120.09295 * 179.72176 * 6 5 4 8 8 C 1.39742 * 119.90704 * 0.56504 * 7 6 5 9 9 C 1.47595 * 120.08463 * 179.68092 * 8 7 6 10 10 O 1.21584 * 119.99627 * 150.49810 * 9 8 7 11 11 N 1.34775 * 120.00594 * 330.50106 * 9 8 7 12 12 C 1.46498 * 120.00295 * 186.39212 * 11 9 8 13 13 C 1.52999 * 109.46741 * 84.65789 * 12 11 9 14 14 C 1.46500 * 119.99527 * 6.39728 * 11 9 8 15 15 C 1.50698 * 109.47373 * 98.72063 * 14 11 9 16 16 H 1.07998 * 120.00077 * 359.97438 * 15 14 11 17 17 C 1.37884 * 120.00388 * 179.97438 * 15 14 11 18 18 N 1.31510 * 120.00082 * 180.02562 * 17 15 14 19 19 Si 1.86802 * 119.99425 * 0.02562 * 17 15 14 20 20 H 1.48500 * 109.47142 * 90.00283 * 19 17 15 21 21 H 1.48500 * 109.46650 * 209.99674 * 19 17 15 22 22 H 1.48498 * 109.47281 * 329.99457 * 19 17 15 23 23 C 1.39732 * 119.82339 * 359.70676 * 8 7 6 24 24 C 1.37700 * 119.91142 * 0.02562 * 23 8 7 25 25 H 4.38447 * 5.44509 * 180.02562 * 4 1 2 26 26 H 1.08997 * 109.47699 * 16.95277 * 3 2 1 27 27 H 1.09000 * 109.47193 * 256.94835 * 3 2 1 28 28 H 1.08007 * 119.95539 * 359.97438 * 6 5 4 29 29 H 1.08002 * 120.04926 * 180.27623 * 7 6 5 30 30 H 1.08998 * 109.47239 * 204.65513 * 12 11 9 31 31 H 1.08996 * 109.47608 * 324.66051 * 12 11 9 32 32 H 1.09004 * 109.47396 * 300.00024 * 13 12 11 33 33 H 1.08997 * 109.47580 * 59.99968 * 13 12 11 34 34 H 1.08998 * 109.47332 * 179.97438 * 13 12 11 35 35 H 1.09003 * 109.46709 * 218.71648 * 14 11 9 36 36 H 1.09002 * 109.47649 * 338.71904 * 14 11 9 37 37 H 0.96998 * 119.99841 * 180.02562 * 18 17 15 38 38 H 1.08004 * 120.04215 * 179.97438 * 23 8 7 39 39 H 1.08001 * 119.95299 * 180.02562 * 24 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 8 3.1218 0.9855 -0.9197 5 6 4.4671 1.1164 -1.0407 6 6 5.3126 0.3145 -0.2829 7 6 6.6782 0.4403 -0.4070 8 6 7.2138 1.3840 -1.2876 9 6 8.6770 1.5270 -1.4185 10 8 9.1599 1.8956 -2.4716 11 7 9.4778 1.2489 -0.3707 12 6 10.9144 1.5233 -0.4536 13 6 11.1762 2.9855 -0.0872 14 6 8.9114 0.6720 0.8511 15 6 9.1304 -0.8190 0.8510 16 1 9.6401 -1.2899 0.0235 17 6 8.6802 -1.5820 1.9075 18 7 8.8717 -2.8831 1.9077 19 14 7.7980 -0.7675 3.3386 20 1 6.3388 -0.7323 3.0652 21 1 8.0503 -1.5415 4.5806 22 1 8.3037 0.6184 3.5077 23 6 6.3605 2.1921 -2.0435 24 6 4.9960 2.0562 -1.9176 25 1 -1.0502 -0.0001 0.0003 26 1 3.0098 -0.9821 -0.2996 27 1 3.0092 0.2329 1.0011 28 1 4.8978 -0.4111 0.4012 29 1 7.3344 -0.1862 0.1789 30 1 11.4490 0.8738 0.2395 31 1 11.2623 1.3354 -1.4693 32 1 10.6416 3.6352 -0.7803 33 1 10.8284 3.1735 0.9285 34 1 12.2451 3.1897 -0.1484 35 1 9.4006 1.1110 1.7207 36 1 7.8426 0.8822 0.8907 37 1 8.5546 -3.4199 2.6507 38 1 6.7707 2.9228 -2.7248 39 1 4.3358 2.6802 -2.5018 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000266623486.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:23:50 Heat of formation + Delta-G solvation = 38.293725 kcal Electronic energy + Delta-G solvation = -22384.672731 eV Core-core repulsion = 19067.800268 eV Total energy + Delta-G solvation = -3316.872463 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 287.131 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.31059 -39.22973 -36.90288 -35.51689 -33.62758 -32.95963 -31.53170 -30.46875 -29.46798 -27.88961 -27.52522 -23.66874 -22.97049 -22.31159 -21.63104 -19.00694 -18.52216 -18.07009 -17.16058 -16.69739 -16.11748 -16.07182 -15.28935 -14.67947 -14.54635 -14.35253 -13.91607 -13.66318 -13.35969 -13.05209 -12.93805 -12.78507 -12.59474 -12.17275 -11.99059 -11.76178 -11.53032 -11.24836 -11.10309 -10.95011 -10.77306 -10.49184 -10.36768 -10.30920 -9.98402 -9.73110 -9.15058 -8.94617 -8.60631 -7.98416 -7.75822 -6.39202 -4.42348 1.35308 1.68645 2.13718 2.54162 3.04002 3.15031 3.17098 3.37875 3.50588 3.80279 4.10522 4.20159 4.23288 4.87728 4.94922 5.13116 5.15265 5.19601 5.22850 5.59433 5.61032 5.63353 5.75313 5.77962 5.82821 5.91289 6.22854 6.27979 6.33900 6.39887 6.51811 6.54903 6.66910 6.73596 6.85694 6.99548 7.21265 7.27738 7.35653 7.48821 8.02187 8.31758 8.70028 8.88177 9.18108 10.72110 Molecular weight = 287.13amu Principal moments of inertia in cm(-1) A = 0.012874 B = 0.006011 C = 0.004403 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2174.346271 B = 4656.807806 C = 6358.466716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.192 4.192 3 C 0.167 3.833 4 O -0.312 6.312 5 C 0.143 3.857 6 C -0.225 4.225 7 C -0.062 4.062 8 C -0.168 4.168 9 C 0.563 3.437 10 O -0.567 6.567 11 N -0.584 5.584 12 C 0.116 3.884 13 C -0.164 4.164 14 C 0.178 3.822 15 C -0.546 4.546 16 H 0.084 0.916 17 C 0.081 3.919 18 N -0.878 5.878 19 Si 0.860 3.140 20 H -0.268 1.268 21 H -0.279 1.279 22 H -0.260 1.260 23 C -0.029 4.029 24 C -0.171 4.171 25 H 0.224 0.776 26 H 0.092 0.908 27 H 0.090 0.910 28 H 0.130 0.870 29 H 0.199 0.801 30 H 0.083 0.917 31 H 0.073 0.927 32 H 0.054 0.946 33 H 0.053 0.947 34 H 0.059 0.941 35 H 0.031 0.969 36 H 0.057 0.943 37 H 0.270 0.730 38 H 0.134 0.866 39 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.657 7.331 -0.682 12.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.192 4.192 3 C 0.093 3.907 4 O -0.226 6.226 5 C 0.098 3.902 6 C -0.244 4.244 7 C -0.079 4.079 8 C -0.171 4.171 9 C 0.352 3.648 10 O -0.448 6.448 11 N -0.313 5.313 12 C -0.007 4.007 13 C -0.223 4.223 14 C 0.057 3.943 15 C -0.584 4.584 16 H 0.102 0.898 17 C -0.125 4.125 18 N -0.514 5.514 19 Si 0.685 3.315 20 H -0.193 1.193 21 H -0.204 1.204 22 H -0.184 1.184 23 C -0.048 4.048 24 C -0.190 4.190 25 H 0.241 0.759 26 H 0.109 0.891 27 H 0.108 0.892 28 H 0.148 0.852 29 H 0.215 0.785 30 H 0.102 0.898 31 H 0.091 0.909 32 H 0.073 0.927 33 H 0.072 0.928 34 H 0.078 0.922 35 H 0.049 0.951 36 H 0.074 0.926 37 H 0.080 0.920 38 H 0.152 0.848 39 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -9.545 7.431 -1.179 12.154 hybrid contribution -0.639 -0.042 1.122 1.292 sum -10.184 7.388 -0.056 12.582 Atomic orbital electron populations 1.24966 0.95798 0.98755 0.99008 1.22356 0.93572 1.01696 1.01577 1.19330 0.84730 0.92683 0.93931 1.86004 1.20040 1.56189 1.60345 1.19242 0.81165 0.94868 0.94943 1.21314 0.94578 1.03771 1.04732 1.23241 0.95744 0.95375 0.93502 1.19892 0.93544 1.01533 1.02115 1.18135 0.86315 0.77017 0.83312 1.90676 1.76605 1.49850 1.27718 1.47769 1.07451 1.60481 1.15640 1.21270 0.81367 0.95492 1.02567 1.22128 1.01092 0.97531 1.01508 1.20700 0.96076 0.94602 0.82887 1.21375 1.39650 0.89738 1.07652 0.89819 1.24921 0.95295 0.94701 0.97536 1.69882 1.44715 1.04839 1.31943 0.87086 0.80917 0.80617 0.82878 1.19273 1.20444 1.18385 1.20953 0.91486 0.96797 0.95531 1.20181 0.94824 1.01475 1.02532 0.75923 0.89054 0.89239 0.85206 0.78455 0.89835 0.90861 0.92736 0.92789 0.92153 0.95090 0.92551 0.91991 0.84782 0.85159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.64 19.25 29.55 0.57 -1.07 16 2 C -0.19 -2.31 13.73 -37.13 -0.51 -2.82 16 3 C 0.17 2.08 5.21 34.37 0.18 2.26 16 4 O -0.31 -4.62 10.08 -18.84 -0.19 -4.81 16 5 C 0.14 2.28 6.70 -39.02 -0.26 2.02 16 6 C -0.23 -3.84 9.01 -39.50 -0.36 -4.20 16 7 C -0.06 -1.20 7.48 -39.22 -0.29 -1.50 16 8 C -0.17 -3.28 5.60 -104.96 -0.59 -3.87 16 9 C 0.56 12.05 7.42 -12.44 -0.09 11.96 16 10 O -0.57 -13.04 16.33 5.29 0.09 -12.95 16 11 N -0.58 -12.18 2.48 -176.27 -0.44 -12.62 16 12 C 0.12 2.12 6.13 -4.04 -0.02 2.10 16 13 C -0.16 -2.52 10.20 37.16 0.38 -2.14 16 14 C 0.18 3.86 3.69 -5.19 -0.02 3.84 16 15 C -0.55 -13.71 8.10 -34.44 -0.28 -13.99 16 16 H 0.08 2.38 8.06 -52.49 -0.42 1.95 16 17 C 0.08 2.06 5.35 -17.82 -0.10 1.97 16 18 N -0.88 -24.10 13.96 55.43 0.77 -23.32 16 19 Si 0.86 18.49 27.33 -169.99 -4.65 13.85 16 20 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 21 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 22 H -0.26 -5.37 6.54 56.52 0.37 -5.00 16 23 C -0.03 -0.48 9.59 -39.22 -0.38 -0.86 16 24 C -0.17 -2.64 9.97 -39.50 -0.39 -3.03 16 25 H 0.22 1.23 7.80 -54.08 -0.42 0.80 16 26 H 0.09 1.04 7.66 -51.93 -0.40 0.64 16 27 H 0.09 1.01 7.64 -51.93 -0.40 0.61 16 28 H 0.13 1.98 6.28 -52.48 -0.33 1.65 16 29 H 0.20 4.32 2.90 -52.49 -0.15 4.17 16 30 H 0.08 1.51 8.03 -51.93 -0.42 1.09 16 31 H 0.07 1.37 7.50 -51.93 -0.39 0.98 16 32 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 33 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.03 0.66 7.19 -51.93 -0.37 0.29 16 36 H 0.06 1.20 3.41 -52.39 -0.18 1.02 16 37 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 38 H 0.13 2.09 7.91 -52.48 -0.42 1.67 16 39 H 0.13 1.69 8.06 -52.49 -0.42 1.27 16 LS Contribution 333.53 15.07 5.03 5.03 Total: -1.00 -29.65 333.53 -6.30 -35.95 By element: Atomic # 1 Polarization: 12.96 SS G_CDS: -4.75 Total: 8.21 kcal Atomic # 6 Polarization: -7.17 SS G_CDS: -2.16 Total: -9.33 kcal Atomic # 7 Polarization: -36.28 SS G_CDS: 0.34 Total: -35.94 kcal Atomic # 8 Polarization: -17.66 SS G_CDS: -0.10 Total: -17.76 kcal Atomic # 14 Polarization: 18.49 SS G_CDS: -4.65 Total: 13.85 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -29.65 -6.30 -35.95 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000266623486.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.244 kcal (2) G-P(sol) polarization free energy of solvation -29.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.950 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds