Wall clock time and date at job start Tue Mar 31 2020 06:23:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47193 * 179.97438 * 2 1 4 4 O 1.42904 * 109.46861 * 136.95099 * 3 2 1 5 5 C 1.35712 * 116.99728 * 179.97438 * 4 3 2 6 6 C 1.38993 * 119.91627 * 359.73276 * 5 4 3 7 7 C 1.37699 * 120.09295 * 179.72176 * 6 5 4 8 8 C 1.39742 * 119.90704 * 0.56504 * 7 6 5 9 9 C 1.47595 * 120.08463 * 179.68092 * 8 7 6 10 10 O 1.21584 * 119.99627 * 150.49810 * 9 8 7 11 11 N 1.34775 * 120.00594 * 330.50106 * 9 8 7 12 12 C 1.46498 * 120.00295 * 186.39212 * 11 9 8 13 13 C 1.52999 * 109.46741 * 84.65789 * 12 11 9 14 14 C 1.46500 * 119.99527 * 6.39728 * 11 9 8 15 15 C 1.50698 * 109.47373 * 98.72063 * 14 11 9 16 16 H 1.07998 * 120.00077 * 359.97438 * 15 14 11 17 17 C 1.37884 * 120.00388 * 179.97438 * 15 14 11 18 18 N 1.31510 * 120.00082 * 180.02562 * 17 15 14 19 19 Si 1.86802 * 119.99425 * 0.02562 * 17 15 14 20 20 H 1.48500 * 109.47142 * 90.00283 * 19 17 15 21 21 H 1.48500 * 109.46650 * 209.99674 * 19 17 15 22 22 H 1.48498 * 109.47281 * 329.99457 * 19 17 15 23 23 C 1.39732 * 119.82339 * 359.70676 * 8 7 6 24 24 C 1.37700 * 119.91142 * 0.02562 * 23 8 7 25 25 H 4.38447 * 5.44509 * 180.02562 * 4 1 2 26 26 H 1.08997 * 109.47699 * 16.95277 * 3 2 1 27 27 H 1.09000 * 109.47193 * 256.94835 * 3 2 1 28 28 H 1.08007 * 119.95539 * 359.97438 * 6 5 4 29 29 H 1.08002 * 120.04926 * 180.27623 * 7 6 5 30 30 H 1.08998 * 109.47239 * 204.65513 * 12 11 9 31 31 H 1.08996 * 109.47608 * 324.66051 * 12 11 9 32 32 H 1.09004 * 109.47396 * 300.00024 * 13 12 11 33 33 H 1.08997 * 109.47580 * 59.99968 * 13 12 11 34 34 H 1.08998 * 109.47332 * 179.97438 * 13 12 11 35 35 H 1.09003 * 109.46709 * 218.71648 * 14 11 9 36 36 H 1.09002 * 109.47649 * 338.71904 * 14 11 9 37 37 H 0.96998 * 119.99841 * 180.02562 * 18 17 15 38 38 H 1.08004 * 120.04215 * 179.97438 * 23 8 7 39 39 H 1.08001 * 119.95299 * 180.02562 * 24 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 8 3.1218 0.9855 -0.9197 5 6 4.4671 1.1164 -1.0407 6 6 5.3126 0.3145 -0.2829 7 6 6.6782 0.4403 -0.4070 8 6 7.2138 1.3840 -1.2876 9 6 8.6770 1.5270 -1.4185 10 8 9.1599 1.8956 -2.4716 11 7 9.4778 1.2489 -0.3707 12 6 10.9144 1.5233 -0.4536 13 6 11.1762 2.9855 -0.0872 14 6 8.9114 0.6720 0.8511 15 6 9.1304 -0.8190 0.8510 16 1 9.6401 -1.2899 0.0235 17 6 8.6802 -1.5820 1.9075 18 7 8.8717 -2.8831 1.9077 19 14 7.7980 -0.7675 3.3386 20 1 6.3388 -0.7323 3.0652 21 1 8.0503 -1.5415 4.5806 22 1 8.3037 0.6184 3.5077 23 6 6.3605 2.1921 -2.0435 24 6 4.9960 2.0562 -1.9176 25 1 -1.0502 -0.0001 0.0003 26 1 3.0098 -0.9821 -0.2996 27 1 3.0092 0.2329 1.0011 28 1 4.8978 -0.4111 0.4012 29 1 7.3344 -0.1862 0.1789 30 1 11.4490 0.8738 0.2395 31 1 11.2623 1.3354 -1.4693 32 1 10.6416 3.6352 -0.7803 33 1 10.8284 3.1735 0.9285 34 1 12.2451 3.1897 -0.1484 35 1 9.4006 1.1110 1.7207 36 1 7.8426 0.8822 0.8907 37 1 8.5546 -3.4199 2.6507 38 1 6.7707 2.9228 -2.7248 39 1 4.3358 2.6802 -2.5018 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000266623486.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:23:50 Heat of formation + Delta-G solvation = 21.452795 kcal Electronic energy + Delta-G solvation = -22385.403009 eV Core-core repulsion = 19067.800268 eV Total energy + Delta-G solvation = -3317.602741 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 287.131 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.70299 -40.63320 -38.23441 -37.21246 -34.84435 -34.45273 -33.00343 -31.83946 -30.83137 -29.62943 -28.54929 -25.08826 -24.68837 -23.74538 -23.00469 -20.49724 -19.42573 -19.30533 -19.08770 -18.24747 -17.54636 -17.12390 -16.57180 -16.37097 -16.13702 -15.79046 -15.19907 -15.12420 -14.71674 -14.65475 -14.29359 -14.14737 -13.94434 -13.51545 -13.40052 -13.20972 -12.99107 -12.65993 -12.61116 -12.40350 -12.09906 -11.89480 -11.81462 -11.67894 -11.38976 -11.17887 -10.88058 -10.73936 -9.99889 -9.53337 -9.23144 -8.36035 -6.44883 -0.04056 0.33950 1.23405 1.36126 1.40175 1.49195 1.74387 1.83151 2.24381 2.29349 2.55205 2.77991 2.96658 3.39429 3.66123 3.80219 3.90624 4.11799 4.20807 4.23267 4.33470 4.37372 4.48115 4.50726 4.58874 4.67202 4.83653 4.90440 4.93426 4.99030 5.06291 5.14998 5.26918 5.33671 5.36758 5.46345 5.62066 5.72996 6.11767 6.25479 6.51197 6.56536 6.64646 7.14989 7.27529 8.79322 Molecular weight = 287.13amu Principal moments of inertia in cm(-1) A = 0.012874 B = 0.006011 C = 0.004403 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2174.346271 B = 4656.807806 C = 6358.466716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.250 4.250 3 C 0.161 3.839 4 O -0.314 6.314 5 C 0.153 3.847 6 C -0.226 4.226 7 C -0.080 4.080 8 C -0.191 4.191 9 C 0.555 3.445 10 O -0.591 6.591 11 N -0.590 5.590 12 C 0.108 3.892 13 C -0.151 4.151 14 C 0.188 3.812 15 C -0.544 4.544 16 H 0.033 0.967 17 C 0.033 3.967 18 N -0.929 5.929 19 Si 0.920 3.080 20 H -0.246 1.246 21 H -0.281 1.281 22 H -0.242 1.242 23 C -0.025 4.025 24 C -0.161 4.161 25 H 0.262 0.738 26 H 0.097 0.903 27 H 0.099 0.901 28 H 0.145 0.855 29 H 0.175 0.825 30 H 0.080 0.920 31 H 0.062 0.938 32 H 0.045 0.955 33 H 0.059 0.941 34 H 0.088 0.912 35 H 0.040 0.960 36 H 0.072 0.928 37 H 0.272 0.728 38 H 0.146 0.854 39 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.407 9.222 0.170 15.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.250 4.250 3 C 0.087 3.913 4 O -0.228 6.228 5 C 0.107 3.893 6 C -0.244 4.244 7 C -0.097 4.097 8 C -0.194 4.194 9 C 0.346 3.654 10 O -0.475 6.475 11 N -0.319 5.319 12 C -0.015 4.015 13 C -0.209 4.209 14 C 0.066 3.934 15 C -0.582 4.582 16 H 0.051 0.949 17 C -0.168 4.168 18 N -0.567 5.567 19 Si 0.741 3.259 20 H -0.170 1.170 21 H -0.207 1.207 22 H -0.165 1.165 23 C -0.044 4.044 24 C -0.179 4.179 25 H 0.278 0.722 26 H 0.114 0.886 27 H 0.117 0.883 28 H 0.162 0.838 29 H 0.191 0.809 30 H 0.099 0.901 31 H 0.081 0.919 32 H 0.064 0.936 33 H 0.078 0.922 34 H 0.107 0.893 35 H 0.058 0.942 36 H 0.089 0.911 37 H 0.082 0.918 38 H 0.164 0.836 39 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -12.293 9.336 -0.329 15.440 hybrid contribution 0.109 -0.693 0.748 1.025 sum -12.183 8.643 0.418 14.944 Atomic orbital electron populations 1.25946 0.96633 0.96069 0.96340 1.22599 0.94119 1.04196 1.04071 1.19499 0.85607 0.92309 0.93860 1.86009 1.18966 1.56891 1.60931 1.19291 0.81721 0.94141 0.94146 1.21408 0.93624 1.04230 1.05154 1.22920 0.96608 0.95848 0.94346 1.19885 0.92663 1.03111 1.03771 1.18537 0.87365 0.76523 0.82954 1.90641 1.77284 1.51225 1.28369 1.47899 1.08422 1.60186 1.15394 1.21447 0.80260 0.97756 1.01988 1.22019 1.02905 0.94627 1.01390 1.20555 0.97150 0.92173 0.83492 1.21360 1.38969 0.91686 1.06210 0.94872 1.25704 0.95846 0.94929 1.00305 1.70028 1.46666 1.06738 1.33258 0.86119 0.80852 0.80225 0.78681 1.16961 1.20660 1.16483 1.21093 0.91900 0.96391 0.95006 1.20486 0.94478 1.01055 1.01892 0.72161 0.88555 0.88332 0.83759 0.80882 0.90142 0.91924 0.93577 0.92178 0.89304 0.94210 0.91074 0.91826 0.83601 0.82145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.14 19.25 74.32 1.43 -0.71 16 2 C -0.25 -5.42 13.73 31.12 0.43 -4.99 16 3 C 0.16 3.68 5.21 70.17 0.37 4.05 16 4 O -0.31 -8.54 10.08 -90.33 -0.91 -9.45 16 5 C 0.15 4.54 6.70 22.63 0.15 4.69 16 6 C -0.23 -7.39 9.01 22.32 0.20 -7.18 16 7 C -0.08 -3.11 7.48 22.51 0.17 -2.94 16 8 C -0.19 -7.47 5.60 -20.08 -0.11 -7.58 16 9 C 0.56 24.24 7.42 86.71 0.64 24.89 16 10 O -0.59 -27.77 16.33 -3.98 -0.06 -27.83 16 11 N -0.59 -25.13 2.48 -829.87 -2.06 -27.18 16 12 C 0.11 4.03 6.13 86.38 0.53 4.56 16 13 C -0.15 -4.49 10.20 71.98 0.73 -3.75 16 14 C 0.19 8.19 3.69 85.63 0.32 8.50 16 15 C -0.54 -28.37 8.10 25.60 0.21 -28.17 16 16 H 0.03 2.01 8.06 -2.91 -0.02 1.99 16 17 C 0.03 1.73 5.35 84.66 0.45 2.18 16 18 N -0.93 -52.80 13.96 21.45 0.30 -52.50 16 19 Si 0.92 37.50 27.33 68.60 1.88 39.38 16 20 H -0.25 -9.12 7.11 99.48 0.71 -8.41 16 21 H -0.28 -11.52 7.11 99.48 0.71 -10.81 16 22 H -0.24 -9.09 6.54 99.48 0.65 -8.44 16 23 C -0.03 -0.81 9.59 22.50 0.22 -0.59 16 24 C -0.16 -4.53 9.97 22.32 0.22 -4.30 16 25 H 0.26 1.61 7.80 -4.41 -0.03 1.58 16 26 H 0.10 2.05 7.66 -2.39 -0.02 2.03 16 27 H 0.10 2.02 7.64 -2.39 -0.02 2.01 16 28 H 0.14 4.18 6.28 -2.91 -0.02 4.17 16 29 H 0.17 7.70 2.90 -2.91 -0.01 7.69 16 30 H 0.08 2.99 8.03 -2.39 -0.02 2.97 16 31 H 0.06 2.44 7.50 -2.39 -0.02 2.42 16 32 H 0.05 1.44 8.14 -2.38 -0.02 1.42 16 33 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 34 H 0.09 2.11 8.14 -2.39 -0.02 2.09 16 35 H 0.04 1.66 7.19 -2.39 -0.02 1.65 16 36 H 0.07 2.99 3.41 -2.82 -0.01 2.98 16 37 H 0.27 14.38 8.31 -92.71 -0.77 13.61 16 38 H 0.15 4.32 7.91 -2.91 -0.02 4.29 16 39 H 0.16 3.54 8.06 -2.91 -0.02 3.52 16 Total: -1.00 -66.61 333.53 6.10 -60.51 By element: Atomic # 1 Polarization: 27.43 SS G_CDS: 1.00 Total: 28.44 kcal Atomic # 6 Polarization: -17.32 SS G_CDS: 5.95 Total: -11.37 kcal Atomic # 7 Polarization: -77.92 SS G_CDS: -1.76 Total: -79.68 kcal Atomic # 8 Polarization: -36.30 SS G_CDS: -0.98 Total: -37.28 kcal Atomic # 14 Polarization: 37.50 SS G_CDS: 1.88 Total: 39.38 kcal Total: -66.61 6.10 -60.51 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000266623486.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.967 kcal (2) G-P(sol) polarization free energy of solvation -66.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.514 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds