Wall clock time and date at job start Tue Mar 31 2020 06:14:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08997 * 109.47258 * 2 1 4 4 N 1.46900 * 109.47047 * 120.00314 * 2 1 3 5 5 C 1.46905 * 110.99860 * 201.51290 * 4 2 1 6 6 H 1.09003 * 109.46745 * 327.26948 * 5 4 2 7 7 C 1.52991 * 109.47070 * 87.27310 * 5 4 2 8 8 C 1.50698 * 109.46868 * 207.27319 * 5 4 2 9 9 H 1.08002 * 120.00260 * 0.02562 * 8 5 4 10 10 C 1.37874 * 120.00058 * 179.97438 * 8 5 4 11 11 N 1.31517 * 119.99849 * 0.02562 * 10 8 5 12 12 Si 1.86797 * 120.00401 * 179.97438 * 10 8 5 13 13 H 1.48511 * 109.46903 * 0.02562 * 12 10 8 14 14 H 1.48502 * 109.47152 * 119.99943 * 12 10 8 15 15 H 1.48497 * 109.47588 * 240.00300 * 12 10 8 16 16 C 1.50700 * 109.46735 * 240.00089 * 2 1 3 17 17 C 1.38240 * 120.00229 * 279.72563 * 16 2 1 18 18 C 1.38228 * 120.00241 * 179.79239 * 17 16 2 19 19 C 1.38232 * 120.00024 * 0.43896 * 18 17 16 20 20 C 1.50702 * 120.00224 * 179.83607 * 19 18 17 21 21 F 1.39905 * 109.47072 * 269.98050 * 20 19 18 22 22 F 1.39901 * 109.46909 * 29.98156 * 20 19 18 23 23 F 1.39893 * 109.47171 * 149.97852 * 20 19 18 24 24 C 1.38235 * 119.99956 * 359.81616 * 19 18 17 25 25 C 1.38229 * 120.00131 * 100.00458 * 16 2 1 26 26 H 1.08996 * 109.46756 * 295.84658 * 1 2 3 27 27 H 1.08995 * 109.46980 * 55.83957 * 1 2 3 28 28 H 1.08998 * 109.47253 * 175.84360 * 1 2 3 29 29 H 1.00896 * 111.00274 * 77.55502 * 4 2 1 30 30 H 1.09007 * 109.47419 * 60.21262 * 7 5 4 31 31 H 1.09000 * 109.47034 * 180.21303 * 7 5 4 32 32 H 1.08999 * 109.47798 * 300.20998 * 7 5 4 33 33 H 0.96995 * 120.00299 * 180.02562 * 11 10 8 34 34 H 1.08005 * 119.99352 * 359.97438 * 17 16 2 35 35 H 1.07998 * 120.00159 * 180.27835 * 18 17 16 36 36 H 1.07999 * 120.00084 * 179.97438 * 24 19 18 37 37 H 1.08004 * 120.00251 * 359.97438 * 25 16 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0197 -0.6926 1.1994 5 6 3.3981 -0.2925 1.5124 6 1 3.9338 -0.0804 0.5871 7 6 3.3787 0.9609 2.3894 8 6 4.0906 -1.4102 2.2488 9 1 3.5599 -2.3263 2.4625 10 6 5.4019 -1.2638 2.6488 11 7 6.0482 -0.1485 2.3881 12 14 6.2600 -2.6490 3.5622 13 1 5.3213 -3.7874 3.7300 14 1 7.4445 -3.0950 2.7853 15 1 6.6967 -2.1660 4.8968 16 6 2.0323 -0.7104 -1.2305 17 6 2.0720 -2.0918 -1.2633 18 6 2.5286 -2.7435 -2.3936 19 6 2.9541 -2.0138 -3.4877 20 6 3.4554 -2.7242 -4.7186 21 9 4.8357 -2.9255 -4.6112 22 9 2.8117 -3.9605 -4.8381 23 9 3.1842 -1.9460 -5.8491 24 6 2.9194 -0.6323 -3.4530 25 6 2.4587 0.0194 -2.3243 26 1 -0.3633 0.4480 0.9248 27 1 -0.3633 0.5770 -0.8503 28 1 -0.3634 -1.0249 -0.0745 29 1 1.9488 -1.6934 1.0933 30 1 2.8462 0.7476 3.3164 31 1 4.4016 1.2599 2.6185 32 1 2.8746 1.7683 1.8584 33 1 6.9709 -0.0456 2.6691 34 1 1.7434 -2.6619 -0.4069 35 1 2.5554 -3.8228 -2.4209 36 1 3.2522 -0.0621 -4.3077 37 1 2.4316 1.0987 -2.2972 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000276237889.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:25 Heat of formation + Delta-G solvation = -133.622920 kcal Electronic energy + Delta-G solvation = -22940.560430 eV Core-core repulsion = 19074.376361 eV Total energy + Delta-G solvation = -3866.184069 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 287.119 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -50.13999 -47.67520 -47.58424 -39.63960 -36.47099 -33.58623 -31.45177 -30.96840 -29.95302 -27.17396 -25.83834 -25.16916 -23.01560 -22.40227 -20.62499 -19.59217 -18.48602 -18.41573 -18.31661 -16.73626 -15.71228 -15.29742 -14.86359 -14.69383 -14.43401 -14.35555 -14.08013 -13.85605 -13.77719 -13.73879 -13.70538 -13.25662 -13.11552 -12.93967 -12.50994 -11.95808 -11.85074 -11.57192 -11.26006 -11.20248 -10.96385 -10.67197 -10.54936 -10.35033 -10.17941 -9.99353 -8.93836 -8.87198 -8.81751 -8.51693 -7.44769 -6.06438 -4.12993 1.06087 1.40599 2.70180 3.26385 3.34601 3.37664 3.61329 3.76814 4.06066 4.36932 4.47368 4.85721 4.91357 4.94439 5.12455 5.26902 5.41700 5.52021 5.59126 5.76510 5.83947 5.98220 6.06478 6.22812 6.25730 6.33149 6.49437 6.67801 6.82509 6.90004 7.09223 7.18472 7.44395 7.72973 7.84489 8.20087 8.28939 8.57461 8.96286 9.53242 10.99917 Molecular weight = 287.12amu Principal moments of inertia in cm(-1) A = 0.015259 B = 0.005141 C = 0.004291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1834.540732 B = 5445.134461 C = 6524.450422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.113 3.887 3 H 0.084 0.916 4 N -0.677 5.677 5 C 0.211 3.789 6 H 0.005 0.995 7 C -0.125 4.125 8 C -0.519 4.519 9 H 0.059 0.941 10 C 0.063 3.937 11 N -0.888 5.888 12 Si 0.894 3.106 13 H -0.273 1.273 14 H -0.285 1.285 15 H -0.283 1.283 16 C -0.059 4.059 17 C -0.110 4.110 18 C -0.067 4.067 19 C -0.197 4.197 20 C 0.510 3.490 21 F -0.177 7.177 22 F -0.180 7.180 23 F -0.181 7.181 24 C -0.071 4.071 25 C -0.117 4.117 26 H 0.066 0.934 27 H 0.050 0.950 28 H 0.051 0.949 29 H 0.332 0.668 30 H 0.031 0.969 31 H 0.080 0.920 32 H 0.004 0.996 33 H 0.261 0.739 34 H 0.135 0.865 35 H 0.132 0.868 36 H 0.130 0.870 37 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.197 -1.741 -12.249 14.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.002 3.998 3 H 0.103 0.897 4 N -0.308 5.308 5 C 0.103 3.897 6 H 0.022 0.978 7 C -0.183 4.183 8 C -0.557 4.557 9 H 0.077 0.923 10 C -0.139 4.139 11 N -0.527 5.527 12 Si 0.722 3.278 13 H -0.197 1.197 14 H -0.211 1.211 15 H -0.209 1.209 16 C -0.061 4.061 17 C -0.128 4.128 18 C -0.085 4.085 19 C -0.199 4.199 20 C 0.456 3.544 21 F -0.159 7.159 22 F -0.162 7.162 23 F -0.163 7.163 24 C -0.089 4.089 25 C -0.136 4.136 26 H 0.085 0.915 27 H 0.069 0.931 28 H 0.070 0.930 29 H 0.152 0.848 30 H 0.051 0.949 31 H 0.099 0.901 32 H 0.023 0.977 33 H 0.070 0.930 34 H 0.152 0.848 35 H 0.149 0.851 36 H 0.148 0.852 37 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -8.278 -1.226 -11.780 14.450 hybrid contribution 1.335 -1.313 -0.451 1.926 sum -6.942 -2.539 -12.231 14.292 Atomic orbital electron populations 1.21761 0.94151 1.01579 1.01560 1.20779 0.95039 0.98242 0.85712 0.89747 1.61020 1.27002 1.11008 1.31802 1.19131 0.81804 0.94299 0.94440 0.97756 1.21730 1.01968 0.96093 0.98520 1.21263 0.96662 1.00651 1.37168 0.92298 1.24897 0.97322 0.95763 0.95875 1.69896 1.10962 1.25034 1.46786 0.86506 0.79517 0.82235 0.79544 1.19745 1.21090 1.20935 1.21270 0.93894 0.94381 0.96540 1.20961 0.99939 0.94269 0.97632 1.20841 0.95705 1.00093 0.91854 1.19838 1.10103 0.95223 0.94699 1.18359 0.75494 0.76802 0.83764 1.93233 1.31348 1.95105 1.96180 1.93168 1.81628 1.44949 1.96435 1.93162 1.93631 1.74835 1.54632 1.20846 0.97019 0.92278 0.98763 1.21054 0.99684 1.00289 0.92553 0.91460 0.93121 0.92976 0.84847 0.94939 0.90112 0.97735 0.92953 0.84760 0.85053 0.85191 0.85108 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.76 9.50 37.16 0.35 -1.41 16 2 C 0.11 1.84 2.67 -68.86 -0.18 1.66 16 3 H 0.08 1.44 7.15 -51.93 -0.37 1.07 16 4 N -0.68 -13.35 6.02 -102.17 -0.61 -13.96 16 5 C 0.21 5.09 2.40 -68.87 -0.17 4.92 16 6 H 0.00 0.13 7.48 -51.93 -0.39 -0.26 16 7 C -0.12 -3.00 9.20 37.15 0.34 -2.66 16 8 C -0.52 -13.79 8.59 -34.44 -0.30 -14.09 16 9 H 0.06 1.54 7.58 -52.49 -0.40 1.15 16 10 C 0.06 1.73 5.30 -17.82 -0.09 1.63 16 11 N -0.89 -25.06 11.32 55.43 0.63 -24.43 16 12 Si 0.89 21.06 29.54 -169.99 -5.02 16.04 16 13 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 14 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 15 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 16 C -0.06 -0.92 4.43 -104.62 -0.46 -1.38 16 17 C -0.11 -1.66 9.16 -39.58 -0.36 -2.02 16 18 C -0.07 -0.95 9.40 -39.59 -0.37 -1.32 16 19 C -0.20 -2.79 5.45 -104.62 -0.57 -3.36 16 20 C 0.51 6.83 3.36 36.01 0.12 6.96 16 21 F -0.18 -2.58 17.30 2.25 0.04 -2.54 16 22 F -0.18 -2.36 16.46 2.25 0.04 -2.32 16 23 F -0.18 -2.32 16.46 2.25 0.04 -2.29 16 24 C -0.07 -0.96 9.40 -39.58 -0.37 -1.34 16 25 C -0.12 -1.67 9.67 -39.58 -0.38 -2.06 16 26 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 27 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 29 H 0.33 6.36 5.87 -39.29 -0.23 6.13 16 30 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.08 2.14 6.08 -51.93 -0.32 1.82 16 32 H 0.00 0.08 7.55 -51.93 -0.39 -0.31 16 33 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 34 H 0.13 1.93 6.49 -52.48 -0.34 1.58 16 35 H 0.13 1.63 7.60 -52.49 -0.40 1.23 16 36 H 0.13 1.49 7.60 -52.49 -0.40 1.09 16 37 H 0.13 1.62 8.04 -52.48 -0.42 1.19 16 LS Contribution 319.30 15.07 4.81 4.81 Total: -1.00 -28.03 319.30 -7.01 -35.04 By element: Atomic # 1 Polarization: 8.59 SS G_CDS: -4.48 Total: 4.10 kcal Atomic # 6 Polarization: -12.02 SS G_CDS: -2.45 Total: -14.46 kcal Atomic # 7 Polarization: -38.41 SS G_CDS: 0.01 Total: -38.39 kcal Atomic # 9 Polarization: -7.26 SS G_CDS: 0.11 Total: -7.15 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.04 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -28.03 -7.01 -35.04 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000276237889.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.581 kcal (2) G-P(sol) polarization free energy of solvation -28.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.042 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds