Wall clock time and date at job start Tue Mar 31 2020 06:14:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08997 * 109.47258 * 2 1 4 4 N 1.46900 * 109.47047 * 120.00314 * 2 1 3 5 5 C 1.46905 * 110.99860 * 201.51290 * 4 2 1 6 6 H 1.09003 * 109.46745 * 327.26948 * 5 4 2 7 7 C 1.52991 * 109.47070 * 87.27310 * 5 4 2 8 8 C 1.50698 * 109.46868 * 207.27319 * 5 4 2 9 9 H 1.08002 * 120.00260 * 0.02562 * 8 5 4 10 10 C 1.37874 * 120.00058 * 179.97438 * 8 5 4 11 11 N 1.31517 * 119.99849 * 0.02562 * 10 8 5 12 12 Si 1.86797 * 120.00401 * 179.97438 * 10 8 5 13 13 H 1.48511 * 109.46903 * 0.02562 * 12 10 8 14 14 H 1.48502 * 109.47152 * 119.99943 * 12 10 8 15 15 H 1.48497 * 109.47588 * 240.00300 * 12 10 8 16 16 C 1.50700 * 109.46735 * 240.00089 * 2 1 3 17 17 C 1.38240 * 120.00229 * 279.72563 * 16 2 1 18 18 C 1.38228 * 120.00241 * 179.79239 * 17 16 2 19 19 C 1.38232 * 120.00024 * 0.43896 * 18 17 16 20 20 C 1.50702 * 120.00224 * 179.83607 * 19 18 17 21 21 F 1.39905 * 109.47072 * 269.98050 * 20 19 18 22 22 F 1.39901 * 109.46909 * 29.98156 * 20 19 18 23 23 F 1.39893 * 109.47171 * 149.97852 * 20 19 18 24 24 C 1.38235 * 119.99956 * 359.81616 * 19 18 17 25 25 C 1.38229 * 120.00131 * 100.00458 * 16 2 1 26 26 H 1.08996 * 109.46756 * 295.84658 * 1 2 3 27 27 H 1.08995 * 109.46980 * 55.83957 * 1 2 3 28 28 H 1.08998 * 109.47253 * 175.84360 * 1 2 3 29 29 H 1.00896 * 111.00274 * 77.55502 * 4 2 1 30 30 H 1.09007 * 109.47419 * 60.21262 * 7 5 4 31 31 H 1.09000 * 109.47034 * 180.21303 * 7 5 4 32 32 H 1.08999 * 109.47798 * 300.20998 * 7 5 4 33 33 H 0.96995 * 120.00299 * 180.02562 * 11 10 8 34 34 H 1.08005 * 119.99352 * 359.97438 * 17 16 2 35 35 H 1.07998 * 120.00159 * 180.27835 * 18 17 16 36 36 H 1.07999 * 120.00084 * 179.97438 * 24 19 18 37 37 H 1.08004 * 120.00251 * 359.97438 * 25 16 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0197 -0.6926 1.1994 5 6 3.3981 -0.2925 1.5124 6 1 3.9338 -0.0804 0.5871 7 6 3.3787 0.9609 2.3894 8 6 4.0906 -1.4102 2.2488 9 1 3.5599 -2.3263 2.4625 10 6 5.4019 -1.2638 2.6488 11 7 6.0482 -0.1485 2.3881 12 14 6.2600 -2.6490 3.5622 13 1 5.3213 -3.7874 3.7300 14 1 7.4445 -3.0950 2.7853 15 1 6.6967 -2.1660 4.8968 16 6 2.0323 -0.7104 -1.2305 17 6 2.0720 -2.0918 -1.2633 18 6 2.5286 -2.7435 -2.3936 19 6 2.9541 -2.0138 -3.4877 20 6 3.4554 -2.7242 -4.7186 21 9 4.8357 -2.9255 -4.6112 22 9 2.8117 -3.9605 -4.8381 23 9 3.1842 -1.9460 -5.8491 24 6 2.9194 -0.6323 -3.4530 25 6 2.4587 0.0194 -2.3243 26 1 -0.3633 0.4480 0.9248 27 1 -0.3633 0.5770 -0.8503 28 1 -0.3634 -1.0249 -0.0745 29 1 1.9488 -1.6934 1.0933 30 1 2.8462 0.7476 3.3164 31 1 4.4016 1.2599 2.6185 32 1 2.8746 1.7683 1.8584 33 1 6.9709 -0.0456 2.6691 34 1 1.7434 -2.6619 -0.4069 35 1 2.5554 -3.8228 -2.4209 36 1 3.2522 -0.0621 -4.3077 37 1 2.4316 1.0987 -2.2972 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000276237889.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:25 Heat of formation + Delta-G solvation = -148.112427 kcal Electronic energy + Delta-G solvation = -22941.188742 eV Core-core repulsion = 19074.376361 eV Total energy + Delta-G solvation = -3866.812381 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 287.119 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -51.20907 -48.71830 -48.67991 -40.80937 -37.96246 -35.33342 -33.05266 -32.11383 -31.28685 -28.79515 -27.21365 -26.93460 -24.15601 -23.58241 -22.20532 -21.10775 -19.56637 -19.50433 -19.38696 -18.56436 -17.19269 -16.80251 -16.30132 -15.92524 -15.52635 -15.52379 -15.24121 -15.17773 -15.12982 -14.91409 -14.83863 -14.50257 -14.39989 -14.27696 -13.88768 -13.53370 -13.24492 -12.99568 -12.83760 -12.77699 -12.42180 -12.30011 -12.19809 -11.98973 -11.90021 -11.67655 -10.85284 -10.57602 -10.04370 -9.97479 -9.09273 -8.12411 -6.25223 -0.07383 0.29644 1.39900 1.42564 1.52797 1.62263 2.41119 2.48424 2.68760 3.00053 3.17205 3.39552 3.60824 3.73094 3.85533 3.88343 4.31800 4.34476 4.46979 4.58287 4.70268 4.86530 4.91347 4.96307 5.08007 5.11359 5.15335 5.21417 5.27437 5.38185 5.45890 5.57359 5.71498 5.79024 5.91050 6.24797 6.47905 6.79008 7.02718 7.45044 8.93197 Molecular weight = 287.12amu Principal moments of inertia in cm(-1) A = 0.015259 B = 0.005141 C = 0.004291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1834.540732 B = 5445.134461 C = 6524.450422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.114 3.886 3 H 0.074 0.926 4 N -0.676 5.676 5 C 0.220 3.780 6 H -0.026 1.026 7 C -0.115 4.115 8 C -0.532 4.532 9 H 0.059 0.941 10 C 0.015 3.985 11 N -0.917 5.917 12 Si 0.954 3.046 13 H -0.265 1.265 14 H -0.285 1.285 15 H -0.281 1.281 16 C -0.074 4.074 17 C -0.123 4.123 18 C -0.072 4.072 19 C -0.205 4.205 20 C 0.516 3.484 21 F -0.185 7.185 22 F -0.178 7.178 23 F -0.176 7.176 24 C -0.072 4.072 25 C -0.124 4.124 26 H 0.064 0.936 27 H 0.072 0.928 28 H 0.058 0.942 29 H 0.335 0.665 30 H 0.027 0.973 31 H 0.054 0.946 32 H 0.023 0.977 33 H 0.261 0.739 34 H 0.137 0.863 35 H 0.147 0.853 36 H 0.152 0.848 37 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.934 -2.279 -12.876 15.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.003 3.997 3 H 0.092 0.908 4 N -0.307 5.307 5 C 0.111 3.889 6 H -0.009 1.009 7 C -0.173 4.173 8 C -0.570 4.570 9 H 0.077 0.923 10 C -0.184 4.184 11 N -0.556 5.556 12 Si 0.780 3.220 13 H -0.189 1.189 14 H -0.211 1.211 15 H -0.207 1.207 16 C -0.076 4.076 17 C -0.141 4.141 18 C -0.090 4.090 19 C -0.206 4.206 20 C 0.462 3.538 21 F -0.166 7.166 22 F -0.159 7.159 23 F -0.157 7.157 24 C -0.090 4.090 25 C -0.142 4.142 26 H 0.083 0.917 27 H 0.091 0.909 28 H 0.077 0.923 29 H 0.154 0.846 30 H 0.046 0.954 31 H 0.072 0.928 32 H 0.042 0.958 33 H 0.070 0.930 34 H 0.155 0.845 35 H 0.165 0.835 36 H 0.169 0.831 37 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -9.040 -1.769 -12.417 15.461 hybrid contribution 1.532 -1.126 -0.320 1.928 sum -7.509 -2.895 -12.737 15.066 Atomic orbital electron populations 1.21690 0.91605 1.02436 1.02415 1.20812 0.96878 0.97182 0.84794 0.90773 1.60924 1.24032 1.11446 1.34264 1.18849 0.83647 0.93686 0.92701 1.00865 1.21565 1.00394 0.96844 0.98540 1.21617 0.97078 1.01294 1.37040 0.92319 1.25655 0.98163 0.97839 0.96777 1.70021 1.11158 1.26645 1.47814 0.85562 0.78383 0.79780 0.78256 1.18889 1.21078 1.20683 1.21253 0.94896 0.94721 0.96740 1.21072 1.00545 0.94317 0.98171 1.21043 0.95329 1.01017 0.91594 1.20016 1.09978 0.95661 0.94958 1.18213 0.75080 0.76854 0.83666 1.93221 1.31997 1.95159 1.96227 1.93174 1.81513 1.44788 1.96417 1.93172 1.93552 1.74705 1.54311 1.21119 0.96276 0.92330 0.99225 1.21288 0.99322 1.01240 0.92397 0.91683 0.90948 0.92326 0.84561 0.95363 0.92764 0.95776 0.93016 0.84522 0.83541 0.83061 0.83489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.05 9.50 71.98 0.68 -2.36 16 2 C 0.11 3.60 2.67 44.17 0.12 3.71 16 3 H 0.07 2.48 7.15 -2.39 -0.02 2.46 16 4 N -0.68 -26.32 6.02 -477.16 -2.87 -29.19 16 5 C 0.22 10.68 2.40 44.16 0.11 10.78 16 6 H -0.03 -1.43 7.48 -2.39 -0.02 -1.44 16 7 C -0.11 -5.57 9.20 71.98 0.66 -4.91 16 8 C -0.53 -28.32 8.59 25.60 0.22 -28.10 16 9 H 0.06 3.06 7.58 -2.91 -0.02 3.03 16 10 C 0.01 0.81 5.30 84.65 0.45 1.26 16 11 N -0.92 -52.35 11.32 21.45 0.24 -52.11 16 12 Si 0.95 43.14 29.54 68.60 2.03 45.16 16 13 H -0.26 -11.51 7.11 99.48 0.71 -10.80 16 14 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 15 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 16 C -0.07 -2.24 4.43 -19.87 -0.09 -2.33 16 17 C -0.12 -3.61 9.16 22.27 0.20 -3.41 16 18 C -0.07 -1.96 9.40 22.27 0.21 -1.75 16 19 C -0.20 -5.48 5.45 -19.87 -0.11 -5.59 16 20 C 0.52 12.99 3.36 71.24 0.24 13.23 16 21 F -0.18 -5.13 17.30 44.97 0.78 -4.35 16 22 F -0.18 -4.34 16.46 44.97 0.74 -3.60 16 23 F -0.18 -4.17 16.46 44.97 0.74 -3.43 16 24 C -0.07 -1.83 9.40 22.27 0.21 -1.62 16 25 C -0.12 -3.37 9.67 22.27 0.22 -3.16 16 26 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 27 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 28 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 29 H 0.33 12.67 5.87 -89.70 -0.53 12.15 16 30 H 0.03 1.33 8.14 -2.38 -0.02 1.32 16 31 H 0.05 2.91 6.08 -2.39 -0.01 2.90 16 32 H 0.02 1.02 7.55 -2.39 -0.02 1.00 16 33 H 0.26 14.19 8.31 -92.71 -0.77 13.42 16 34 H 0.14 3.84 6.49 -2.91 -0.02 3.82 16 35 H 0.15 3.42 7.60 -2.91 -0.02 3.40 16 36 H 0.15 3.13 7.60 -2.91 -0.02 3.11 16 37 H 0.15 3.40 8.04 -2.91 -0.02 3.38 16 Total: -1.00 -58.85 319.30 5.35 -53.50 By element: Atomic # 1 Polarization: 17.69 SS G_CDS: 0.57 Total: 18.26 kcal Atomic # 6 Polarization: -27.36 SS G_CDS: 3.12 Total: -24.24 kcal Atomic # 7 Polarization: -78.68 SS G_CDS: -2.63 Total: -81.31 kcal Atomic # 9 Polarization: -13.64 SS G_CDS: 2.26 Total: -11.38 kcal Atomic # 14 Polarization: 43.14 SS G_CDS: 2.03 Total: 45.16 kcal Total: -58.85 5.35 -53.50 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000276237889.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.609 kcal (2) G-P(sol) polarization free energy of solvation -58.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.504 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds