Wall clock time and date at job start Tue Mar 31 2020 06:26:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17396 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 N 1.46501 * 109.47070 * 258.88209 * 3 2 1 5 5 C 1.37097 * 120.00023 * 263.89192 * 4 3 2 6 6 H 1.08002 * 119.99788 * 200.35428 * 5 4 3 7 7 C 1.38949 * 120.00186 * 20.35469 * 5 4 3 8 8 N 1.31407 * 119.99903 * 21.29672 * 7 5 4 9 9 Si 1.86801 * 120.00012 * 201.29722 * 7 5 4 10 10 H 1.48504 * 109.46850 * 89.99830 * 9 7 5 11 11 H 1.48500 * 109.47106 * 209.99722 * 9 7 5 12 12 H 1.48499 * 109.47308 * 330.00047 * 9 7 5 13 13 C 1.34782 * 119.99808 * 83.89237 * 4 3 2 14 14 O 1.21288 * 120.00000 * 0.02562 * 13 4 3 15 15 C 1.50700 * 119.99742 * 179.97438 * 13 4 3 16 16 C 1.50703 * 109.46956 * 179.97438 * 15 13 4 17 17 C 1.38268 * 119.94249 * 90.00350 * 16 15 13 18 18 C 1.38146 * 120.05404 * 180.02562 * 17 16 15 19 19 C 1.38739 * 119.94272 * 359.97438 * 18 17 16 20 20 O 1.35900 * 120.05430 * 180.02562 * 19 18 17 21 21 C 1.42898 * 116.99948 * 180.02562 * 20 19 18 22 22 C 1.53002 * 109.46838 * 179.97438 * 21 20 19 23 23 C 1.38733 * 119.89051 * 0.27781 * 19 18 17 24 24 C 1.38145 * 119.94173 * 359.46944 * 23 19 18 25 25 H 4.40639 * 5.51388 * 180.02562 * 4 1 2 26 26 H 1.09006 * 109.47071 * 138.88552 * 3 2 1 27 27 H 1.09002 * 109.47687 * 18.88249 * 3 2 1 28 28 H 0.96998 * 119.99765 * 179.97438 * 8 7 5 29 29 H 1.08998 * 109.47221 * 59.99940 * 15 13 4 30 30 H 1.08998 * 109.47185 * 299.99893 * 15 13 4 31 31 H 1.07996 * 119.97079 * 0.02562 * 17 16 15 32 32 H 1.07990 * 120.02779 * 179.97438 * 18 17 16 33 33 H 1.09000 * 109.47202 * 299.99735 * 21 20 19 34 34 H 1.09001 * 109.47383 * 59.99996 * 21 20 19 35 35 H 1.08993 * 109.47091 * 59.99806 * 22 21 20 36 36 H 1.08999 * 109.46952 * 180.02562 * 22 21 20 37 37 H 1.09000 * 109.47286 * 300.00024 * 22 21 20 38 38 H 1.07994 * 120.02795 * 179.72221 * 23 19 18 39 39 H 1.07998 * 119.97668 * 180.23552 * 24 23 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 7 3.1341 0.2672 1.3553 5 6 3.4812 1.5423 1.7205 6 1 4.1322 1.7032 2.5671 7 6 2.9954 2.6275 1.0015 8 7 1.9127 2.4981 0.2680 9 14 3.8814 4.2703 1.0774 10 1 4.9032 4.3317 0.0015 11 1 2.9011 5.3703 0.8924 12 1 4.5441 4.4147 2.3984 13 6 3.2421 -0.7411 2.2431 14 8 2.9356 -1.8692 1.9199 15 6 3.7449 -0.4670 3.6371 16 6 3.7696 -1.7521 4.4239 17 6 4.9041 -2.5426 4.4190 18 6 4.9291 -3.7213 5.1390 19 6 3.8149 -4.1114 5.8678 20 8 3.8372 -5.2702 6.5773 21 6 2.6542 -5.6091 7.3037 22 6 2.8669 -6.9366 8.0341 23 6 2.6761 -3.3191 5.8669 24 6 2.6579 -2.1386 5.1495 25 1 -1.0501 -0.0002 -0.0001 26 1 3.0089 0.7751 -0.6758 27 1 3.0098 -0.9715 -0.3326 28 1 1.5734 3.2558 -0.2336 29 1 3.0833 0.2466 4.1282 30 1 4.7518 -0.0528 3.5853 31 1 5.7712 -2.2382 3.8518 32 1 5.8152 -4.3386 5.1345 33 1 2.4365 -4.8255 8.0295 34 1 1.8178 -5.7056 6.6114 35 1 3.7033 -6.8405 8.7263 36 1 1.9644 -7.1953 8.5878 37 1 3.0844 -7.7200 7.3080 38 1 1.8059 -3.6228 6.4299 39 1 1.7730 -1.5195 5.1515 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000281516397.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:05 Heat of formation + Delta-G solvation = 12.999413 kcal Electronic energy + Delta-G solvation = -21812.705587 eV Core-core repulsion = 18494.736280 eV Total energy + Delta-G solvation = -3317.969307 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 287.131 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.97310 -38.72977 -37.26725 -35.01596 -32.43895 -31.90792 -31.44123 -30.80489 -30.56782 -27.29046 -25.73510 -24.39390 -23.89582 -21.89968 -20.98070 -19.15167 -18.11760 -17.71676 -16.56633 -16.13283 -16.04432 -15.75201 -15.00082 -14.43686 -14.30473 -14.20358 -13.83756 -13.35402 -13.33954 -13.17898 -12.75779 -12.70980 -12.45082 -11.94147 -11.76853 -11.70769 -11.53349 -11.14554 -11.06803 -10.98021 -10.66377 -10.51673 -10.44892 -10.44215 -9.33191 -9.29817 -8.71851 -8.65528 -8.46637 -7.90241 -7.70420 -6.38867 -3.98363 1.69158 1.77492 3.08517 3.19403 3.20872 3.27709 3.73769 3.96202 4.10174 4.16469 4.30508 4.78909 4.83335 4.95765 5.06784 5.08763 5.15895 5.16557 5.36182 5.40414 5.61948 5.65884 5.71446 5.74688 5.84924 5.94618 6.10056 6.24622 6.36944 6.40330 6.57705 6.65815 6.72419 6.83614 7.08153 7.08770 7.18913 7.37023 7.61996 7.68732 8.29344 9.00934 9.03450 9.44124 9.86274 10.60309 Molecular weight = 287.13amu Principal moments of inertia in cm(-1) A = 0.025381 B = 0.003616 C = 0.003368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1102.915952 B = 7741.744493 C = 8312.027437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.273 4.273 2 C -0.098 4.098 3 C 0.243 3.757 4 N -0.441 5.441 5 C -0.349 4.349 6 H 0.101 0.899 7 C 0.039 3.961 8 N -0.848 5.848 9 Si 0.917 3.083 10 H -0.277 1.277 11 H -0.285 1.285 12 H -0.269 1.269 13 C 0.465 3.535 14 O -0.595 6.595 15 C -0.082 4.082 16 C -0.078 4.078 17 C -0.069 4.069 18 C -0.152 4.152 19 C 0.113 3.887 20 O -0.321 6.321 21 C 0.055 3.945 22 C -0.151 4.151 23 C -0.207 4.207 24 C -0.068 4.068 25 H 0.197 0.803 26 H 0.099 0.901 27 H 0.066 0.934 28 H 0.270 0.730 29 H 0.093 0.907 30 H 0.089 0.911 31 H 0.126 0.874 32 H 0.125 0.875 33 H 0.059 0.941 34 H 0.060 0.940 35 H 0.064 0.936 36 H 0.075 0.925 37 H 0.065 0.935 38 H 0.121 0.879 39 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.435 -8.356 10.289 13.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.292 4.292 2 C -0.100 4.100 3 C 0.120 3.880 4 N -0.159 5.159 5 C -0.476 4.476 6 H 0.118 0.882 7 C -0.167 4.167 8 N -0.484 5.484 9 Si 0.743 3.257 10 H -0.203 1.203 11 H -0.211 1.211 12 H -0.194 1.194 13 C 0.254 3.746 14 O -0.481 6.481 15 C -0.122 4.122 16 C -0.079 4.079 17 C -0.087 4.087 18 C -0.170 4.170 19 C 0.069 3.931 20 O -0.236 6.236 21 C -0.021 4.021 22 C -0.208 4.208 23 C -0.225 4.225 24 C -0.086 4.086 25 H 0.214 0.786 26 H 0.117 0.883 27 H 0.084 0.916 28 H 0.080 0.920 29 H 0.111 0.889 30 H 0.107 0.893 31 H 0.144 0.856 32 H 0.143 0.857 33 H 0.077 0.923 34 H 0.078 0.922 35 H 0.083 0.917 36 H 0.094 0.906 37 H 0.084 0.916 38 H 0.139 0.861 39 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 2.334 -8.907 10.007 13.599 hybrid contribution -0.305 1.283 -0.024 1.319 sum 2.029 -7.624 9.983 12.724 Atomic orbital electron populations 1.24154 0.95294 1.07370 1.02398 1.23119 0.94342 0.94461 0.98064 1.17987 0.84271 0.99703 0.85996 1.43675 1.56163 1.07366 1.08744 1.19593 1.29277 0.81140 1.17585 0.88164 1.25298 0.94675 0.99551 0.97221 1.70116 1.17237 1.32151 1.28884 0.86101 0.79211 0.81420 0.78963 1.20262 1.21086 1.19393 1.20094 0.83011 0.85167 0.86318 1.90569 1.55447 1.22709 1.79349 1.20416 1.03222 0.94658 0.93861 1.19507 0.93820 0.97080 0.97486 1.20795 0.98096 0.93092 0.96761 1.20290 0.97484 0.98433 1.00818 1.18891 0.94754 0.85828 0.93631 1.86016 1.38691 1.37694 1.61180 1.22710 0.87057 0.97568 0.94748 1.21764 1.02753 0.95768 1.00507 1.21094 0.97872 0.97606 1.05954 1.20793 0.97530 0.95358 0.94903 0.78631 0.88268 0.91554 0.91959 0.88897 0.89259 0.85641 0.85741 0.92254 0.92157 0.91674 0.90597 0.91608 0.86082 0.86091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.27 -6.33 19.25 29.55 0.57 -5.76 16 2 C -0.10 -2.46 11.42 -37.12 -0.42 -2.89 16 3 C 0.24 5.93 5.06 -6.83 -0.03 5.90 16 4 N -0.44 -10.93 2.60 -117.93 -0.31 -11.24 16 5 C -0.35 -8.51 9.06 -14.93 -0.14 -8.64 16 6 H 0.10 2.28 6.61 -52.49 -0.35 1.93 16 7 C 0.04 0.96 4.84 -17.47 -0.08 0.87 16 8 N -0.85 -21.77 9.58 55.50 0.53 -21.23 16 9 Si 0.92 18.83 29.60 -169.99 -5.03 13.80 16 10 H -0.28 -5.68 7.11 56.52 0.40 -5.27 16 11 H -0.29 -5.97 7.11 56.52 0.40 -5.57 16 12 H -0.27 -5.40 7.11 56.52 0.40 -4.99 16 13 C 0.47 11.11 7.56 -10.98 -0.08 11.03 16 14 O -0.60 -15.75 15.72 5.55 0.09 -15.66 16 15 C -0.08 -1.59 4.32 -29.03 -0.13 -1.71 16 16 C -0.08 -1.43 4.37 -104.60 -0.46 -1.88 16 17 C -0.07 -1.16 9.69 -39.60 -0.38 -1.54 16 18 C -0.15 -2.38 9.99 -39.43 -0.39 -2.77 16 19 C 0.11 1.78 6.69 -39.21 -0.26 1.52 16 20 O -0.32 -4.53 10.14 -19.43 -0.20 -4.73 16 21 C 0.05 0.57 5.46 37.16 0.20 0.77 16 22 C -0.15 -1.19 10.28 37.16 0.38 -0.81 16 23 C -0.21 -3.20 9.04 -39.43 -0.36 -3.56 16 24 C -0.07 -1.17 9.69 -39.60 -0.38 -1.55 16 25 H 0.20 3.73 7.80 -54.09 -0.42 3.30 16 26 H 0.10 2.42 6.63 -51.93 -0.34 2.08 16 27 H 0.07 1.56 7.61 -51.93 -0.40 1.16 16 28 H 0.27 6.64 8.31 -40.82 -0.34 6.30 16 29 H 0.09 1.76 8.04 -51.93 -0.42 1.34 16 30 H 0.09 1.57 7.61 -51.93 -0.40 1.18 16 31 H 0.13 1.88 8.06 -52.49 -0.42 1.46 16 32 H 0.12 1.69 8.06 -52.49 -0.42 1.27 16 33 H 0.06 0.56 7.67 -51.93 -0.40 0.16 16 34 H 0.06 0.61 7.65 -51.93 -0.40 0.22 16 35 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.12 1.56 6.30 -52.49 -0.33 1.23 16 39 H 0.12 1.99 8.06 -52.49 -0.42 1.56 16 LS Contribution 338.53 15.07 5.10 5.10 Total: -1.00 -30.53 338.53 -6.90 -37.43 By element: Atomic # 1 Polarization: 12.68 SS G_CDS: -5.12 Total: 7.56 kcal Atomic # 6 Polarization: -9.05 SS G_CDS: -1.97 Total: -11.02 kcal Atomic # 7 Polarization: -32.70 SS G_CDS: 0.23 Total: -32.47 kcal Atomic # 8 Polarization: -20.28 SS G_CDS: -0.11 Total: -20.39 kcal Atomic # 14 Polarization: 18.83 SS G_CDS: -5.03 Total: 13.80 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -30.53 -6.90 -37.43 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281516397.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.429 kcal (2) G-P(sol) polarization free energy of solvation -30.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.429 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.999 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds