Wall clock time and date at job start Tue Mar 31 2020 06:26:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17396 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 N 1.46501 * 109.47070 * 258.88209 * 3 2 1 5 5 C 1.37097 * 120.00023 * 263.89192 * 4 3 2 6 6 H 1.08002 * 119.99788 * 200.35428 * 5 4 3 7 7 C 1.38949 * 120.00186 * 20.35469 * 5 4 3 8 8 N 1.31407 * 119.99903 * 21.29672 * 7 5 4 9 9 Si 1.86801 * 120.00012 * 201.29722 * 7 5 4 10 10 H 1.48504 * 109.46850 * 89.99830 * 9 7 5 11 11 H 1.48500 * 109.47106 * 209.99722 * 9 7 5 12 12 H 1.48499 * 109.47308 * 330.00047 * 9 7 5 13 13 C 1.34782 * 119.99808 * 83.89237 * 4 3 2 14 14 O 1.21288 * 120.00000 * 0.02562 * 13 4 3 15 15 C 1.50700 * 119.99742 * 179.97438 * 13 4 3 16 16 C 1.50703 * 109.46956 * 179.97438 * 15 13 4 17 17 C 1.38268 * 119.94249 * 90.00350 * 16 15 13 18 18 C 1.38146 * 120.05404 * 180.02562 * 17 16 15 19 19 C 1.38739 * 119.94272 * 359.97438 * 18 17 16 20 20 O 1.35900 * 120.05430 * 180.02562 * 19 18 17 21 21 C 1.42898 * 116.99948 * 180.02562 * 20 19 18 22 22 C 1.53002 * 109.46838 * 179.97438 * 21 20 19 23 23 C 1.38733 * 119.89051 * 0.27781 * 19 18 17 24 24 C 1.38145 * 119.94173 * 359.46944 * 23 19 18 25 25 H 4.40639 * 5.51388 * 180.02562 * 4 1 2 26 26 H 1.09006 * 109.47071 * 138.88552 * 3 2 1 27 27 H 1.09002 * 109.47687 * 18.88249 * 3 2 1 28 28 H 0.96998 * 119.99765 * 179.97438 * 8 7 5 29 29 H 1.08998 * 109.47221 * 59.99940 * 15 13 4 30 30 H 1.08998 * 109.47185 * 299.99893 * 15 13 4 31 31 H 1.07996 * 119.97079 * 0.02562 * 17 16 15 32 32 H 1.07990 * 120.02779 * 179.97438 * 18 17 16 33 33 H 1.09000 * 109.47202 * 299.99735 * 21 20 19 34 34 H 1.09001 * 109.47383 * 59.99996 * 21 20 19 35 35 H 1.08993 * 109.47091 * 59.99806 * 22 21 20 36 36 H 1.08999 * 109.46952 * 180.02562 * 22 21 20 37 37 H 1.09000 * 109.47286 * 300.00024 * 22 21 20 38 38 H 1.07994 * 120.02795 * 179.72221 * 23 19 18 39 39 H 1.07998 * 119.97668 * 180.23552 * 24 23 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 7 3.1341 0.2672 1.3553 5 6 3.4812 1.5423 1.7205 6 1 4.1322 1.7032 2.5671 7 6 2.9954 2.6275 1.0015 8 7 1.9127 2.4981 0.2680 9 14 3.8814 4.2703 1.0774 10 1 4.9032 4.3317 0.0015 11 1 2.9011 5.3703 0.8924 12 1 4.5441 4.4147 2.3984 13 6 3.2421 -0.7411 2.2431 14 8 2.9356 -1.8692 1.9199 15 6 3.7449 -0.4670 3.6371 16 6 3.7696 -1.7521 4.4239 17 6 4.9041 -2.5426 4.4190 18 6 4.9291 -3.7213 5.1390 19 6 3.8149 -4.1114 5.8678 20 8 3.8372 -5.2702 6.5773 21 6 2.6542 -5.6091 7.3037 22 6 2.8669 -6.9366 8.0341 23 6 2.6761 -3.3191 5.8669 24 6 2.6579 -2.1386 5.1495 25 1 -1.0501 -0.0002 -0.0001 26 1 3.0089 0.7751 -0.6758 27 1 3.0098 -0.9715 -0.3326 28 1 1.5734 3.2558 -0.2336 29 1 3.0833 0.2466 4.1282 30 1 4.7518 -0.0528 3.5853 31 1 5.7712 -2.2382 3.8518 32 1 5.8152 -4.3386 5.1345 33 1 2.4365 -4.8255 8.0295 34 1 1.8178 -5.7056 6.6114 35 1 3.7033 -6.8405 8.7263 36 1 1.9644 -7.1953 8.5878 37 1 3.0844 -7.7200 7.3080 38 1 1.8059 -3.6228 6.4299 39 1 1.7730 -1.5195 5.1515 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000281516397.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:04 Heat of formation + Delta-G solvation = -2.682750 kcal Electronic energy + Delta-G solvation = -21813.385617 eV Core-core repulsion = 18494.736280 eV Total energy + Delta-G solvation = -3318.649336 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 287.131 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.20247 -40.41408 -38.53596 -36.88285 -33.92024 -33.52714 -33.08191 -32.10537 -31.71257 -28.92456 -27.41687 -26.12489 -24.89208 -23.07430 -22.20931 -20.94812 -19.55849 -19.17764 -18.36382 -17.90376 -17.00059 -16.97413 -16.53506 -16.11316 -15.91221 -15.80203 -15.22223 -14.65350 -14.60707 -14.39638 -14.14857 -14.10036 -13.81756 -13.40367 -13.33628 -12.80302 -12.74092 -12.72894 -12.59726 -12.43295 -12.21044 -12.06877 -11.63133 -11.57560 -11.20020 -11.17515 -10.61137 -10.32590 -9.89757 -9.80927 -8.97822 -8.23882 -5.89716 0.44789 0.49080 1.44974 1.52518 1.62019 1.91926 2.16764 2.29412 2.35226 2.42721 2.79234 3.11998 3.34306 3.85186 3.92892 3.94432 4.01694 4.06893 4.17524 4.37431 4.40749 4.44947 4.48501 4.60101 4.78569 4.81709 4.83755 4.89800 4.95676 4.96987 5.13595 5.21609 5.34659 5.38945 5.42000 5.51129 5.77305 5.81217 5.87856 6.41070 6.50362 7.13484 7.15762 7.58032 7.99986 8.75354 Molecular weight = 287.13amu Principal moments of inertia in cm(-1) A = 0.025381 B = 0.003616 C = 0.003368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1102.915952 B = 7741.744493 C = 8312.027437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.259 4.259 2 C -0.144 4.144 3 C 0.244 3.756 4 N -0.451 5.451 5 C -0.365 4.365 6 H 0.115 0.885 7 C -0.001 4.001 8 N -0.877 5.877 9 Si 0.986 3.014 10 H -0.275 1.275 11 H -0.291 1.291 12 H -0.257 1.257 13 C 0.455 3.545 14 O -0.627 6.627 15 C -0.070 4.070 16 C -0.103 4.103 17 C -0.076 4.076 18 C -0.159 4.159 19 C 0.112 3.888 20 O -0.330 6.330 21 C 0.042 3.958 22 C -0.146 4.146 23 C -0.208 4.208 24 C -0.083 4.083 25 H 0.233 0.767 26 H 0.092 0.908 27 H 0.064 0.936 28 H 0.268 0.732 29 H 0.094 0.906 30 H 0.106 0.894 31 H 0.137 0.863 32 H 0.144 0.856 33 H 0.071 0.929 34 H 0.062 0.938 35 H 0.066 0.934 36 H 0.100 0.900 37 H 0.061 0.939 38 H 0.145 0.855 39 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.604 -8.437 11.815 14.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.278 4.278 2 C -0.146 4.146 3 C 0.121 3.879 4 N -0.169 5.169 5 C -0.491 4.491 6 H 0.133 0.867 7 C -0.205 4.205 8 N -0.513 5.513 9 Si 0.810 3.190 10 H -0.201 1.201 11 H -0.217 1.217 12 H -0.180 1.180 13 C 0.246 3.754 14 O -0.515 6.515 15 C -0.109 4.109 16 C -0.104 4.104 17 C -0.094 4.094 18 C -0.177 4.177 19 C 0.067 3.933 20 O -0.245 6.245 21 C -0.032 4.032 22 C -0.203 4.203 23 C -0.226 4.226 24 C -0.101 4.101 25 H 0.250 0.750 26 H 0.110 0.890 27 H 0.082 0.918 28 H 0.078 0.922 29 H 0.112 0.888 30 H 0.124 0.876 31 H 0.155 0.845 32 H 0.162 0.838 33 H 0.089 0.911 34 H 0.081 0.919 35 H 0.085 0.915 36 H 0.118 0.882 37 H 0.080 0.920 38 H 0.163 0.837 39 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 2.511 -8.995 11.549 14.853 hybrid contribution -0.435 1.199 -0.471 1.359 sum 2.076 -7.796 11.078 13.705 Atomic orbital electron populations 1.25076 0.96346 1.05647 1.00696 1.23530 0.95211 0.96097 0.99737 1.17905 0.84580 0.99187 0.86244 1.43918 1.56120 1.07919 1.08945 1.20008 1.29649 0.81132 1.18330 0.86719 1.26127 0.94974 1.02720 0.96679 1.70241 1.18470 1.32967 1.29641 0.85032 0.77730 0.76832 0.79379 1.20080 1.21695 1.18045 1.20861 0.82396 0.84493 0.87673 1.90528 1.56811 1.23908 1.80267 1.20318 1.03785 0.95711 0.91105 1.19532 0.95016 0.97238 0.98582 1.20976 0.98120 0.93328 0.96984 1.20555 0.98408 0.98293 1.00448 1.19061 0.94660 0.86236 0.93323 1.86025 1.40572 1.36771 1.61111 1.23063 0.85987 0.99243 0.94919 1.21793 1.04086 0.94131 1.00328 1.21322 0.98815 0.96833 1.05634 1.20940 0.97404 0.96248 0.95482 0.75023 0.89040 0.91794 0.92175 0.88758 0.87591 0.84496 0.83846 0.91063 0.91924 0.91497 0.88154 0.91963 0.83686 0.86059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.26 -11.87 19.25 74.32 1.43 -10.44 16 2 C -0.14 -7.32 11.42 31.12 0.36 -6.97 16 3 C 0.24 12.23 5.06 84.57 0.43 12.66 16 4 N -0.45 -22.66 2.60 -645.40 -1.68 -24.33 16 5 C -0.36 -17.70 9.06 84.04 0.76 -16.94 16 6 H 0.12 5.09 6.61 -2.91 -0.02 5.07 16 7 C 0.00 -0.05 4.84 84.93 0.41 0.36 16 8 N -0.88 -45.21 9.58 21.66 0.21 -45.00 16 9 Si 0.99 38.13 29.60 68.60 2.03 40.16 16 10 H -0.28 -10.51 7.11 99.48 0.71 -9.80 16 11 H -0.29 -11.45 7.11 99.48 0.71 -10.74 16 12 H -0.26 -9.33 7.11 99.48 0.71 -8.62 16 13 C 0.46 22.02 7.56 87.66 0.66 22.69 16 14 O -0.63 -33.85 15.72 -3.05 -0.05 -33.90 16 15 C -0.07 -2.70 4.32 29.10 0.13 -2.57 16 16 C -0.10 -3.73 4.37 -19.85 -0.09 -3.81 16 17 C -0.08 -2.49 9.69 22.26 0.22 -2.27 16 18 C -0.16 -4.79 9.99 22.37 0.22 -4.57 16 19 C 0.11 3.37 6.69 22.51 0.15 3.52 16 20 O -0.33 -8.74 10.14 -92.43 -0.94 -9.68 16 21 C 0.04 0.80 5.46 71.98 0.39 1.19 16 22 C -0.15 -1.96 10.28 71.98 0.74 -1.22 16 23 C -0.21 -6.18 9.04 22.37 0.20 -5.98 16 24 C -0.08 -2.82 9.69 22.26 0.22 -2.60 16 25 H 0.23 8.35 7.80 -4.41 -0.03 8.32 16 26 H 0.09 4.62 6.63 -2.38 -0.02 4.61 16 27 H 0.06 3.13 7.61 -2.39 -0.02 3.12 16 28 H 0.27 13.27 8.31 -92.71 -0.77 12.50 16 29 H 0.09 3.57 8.04 -2.39 -0.02 3.55 16 30 H 0.11 3.65 7.61 -2.39 -0.02 3.64 16 31 H 0.14 4.01 8.06 -2.91 -0.02 3.98 16 32 H 0.14 3.67 8.06 -2.92 -0.02 3.65 16 33 H 0.07 1.17 7.67 -2.39 -0.02 1.15 16 34 H 0.06 1.15 7.65 -2.39 -0.02 1.13 16 35 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 36 H 0.10 0.86 8.14 -2.39 -0.02 0.84 16 37 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 38 H 0.15 3.46 6.30 -2.91 -0.02 3.44 16 39 H 0.12 3.99 8.06 -2.91 -0.02 3.97 16 Total: -1.00 -65.05 338.53 6.85 -58.20 By element: Atomic # 1 Polarization: 30.48 SS G_CDS: 1.04 Total: 31.52 kcal Atomic # 6 Polarization: -23.19 SS G_CDS: 6.23 Total: -16.96 kcal Atomic # 7 Polarization: -67.87 SS G_CDS: -1.47 Total: -69.33 kcal Atomic # 8 Polarization: -42.60 SS G_CDS: -0.98 Total: -43.58 kcal Atomic # 14 Polarization: 38.13 SS G_CDS: 2.03 Total: 40.16 kcal Total: -65.05 6.85 -58.20 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281516397.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.513 kcal (2) G-P(sol) polarization free energy of solvation -65.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.196 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds