Wall clock time and date at job start Tue Mar 31 2020 06:18:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 N 1.46502 * 109.47323 * 205.54813 * 3 2 1 5 5 C 1.37097 * 119.99839 * 96.37398 * 4 3 2 6 6 H 1.08000 * 119.99942 * 155.44179 * 5 4 3 7 7 C 1.38949 * 120.00611 * 335.44568 * 5 4 3 8 8 N 1.31418 * 119.99570 * 349.89249 * 7 5 4 9 9 Si 1.86794 * 120.00487 * 169.89234 * 7 5 4 10 10 H 1.48506 * 109.47027 * 359.97438 * 9 7 5 11 11 H 1.48492 * 109.47344 * 119.99959 * 9 7 5 12 12 H 1.48501 * 109.47382 * 240.00473 * 9 7 5 13 13 C 1.34769 * 119.99781 * 276.38204 * 4 3 2 14 14 O 1.21296 * 120.00191 * 4.79904 * 13 4 3 15 15 C 1.50707 * 119.99774 * 184.79736 * 13 4 3 16 16 H 1.09000 * 109.46606 * 49.33597 * 15 13 4 17 17 C 1.52991 * 109.47283 * 289.32606 * 15 13 4 18 18 O 1.42899 * 109.46773 * 169.32761 * 15 13 4 19 19 C 1.42909 * 113.99941 * 210.00332 * 18 15 13 20 20 C 1.50696 * 109.46922 * 180.02562 * 19 18 15 21 21 C 1.38237 * 119.99858 * 269.71830 * 20 19 18 22 22 C 1.38243 * 119.99663 * 179.76578 * 21 20 19 23 23 C 1.38236 * 120.00055 * 0.51626 * 22 21 20 24 24 C 1.38233 * 119.99681 * 359.74672 * 23 22 21 25 25 C 1.38232 * 120.00751 * 359.97438 * 24 23 22 26 26 H 4.40644 * 5.51400 * 179.97438 * 4 1 2 27 27 H 1.08994 * 109.47415 * 85.54584 * 3 2 1 28 28 H 1.09004 * 109.47212 * 325.54589 * 3 2 1 29 29 H 0.97003 * 119.99759 * 179.97438 * 8 7 5 30 30 H 1.08998 * 109.47130 * 185.72497 * 17 15 13 31 31 H 1.09001 * 109.47613 * 305.72782 * 17 15 13 32 32 H 1.09002 * 109.46957 * 65.73375 * 17 15 13 33 33 H 1.09000 * 109.46791 * 299.99908 * 19 18 15 34 34 H 1.08999 * 109.46876 * 59.99814 * 19 18 15 35 35 H 1.08000 * 120.00029 * 0.02562 * 21 20 19 36 36 H 1.08002 * 119.99775 * 180.23130 * 22 21 20 37 37 H 1.07993 * 119.99633 * 179.71624 * 23 22 21 38 38 H 1.08002 * 119.99765 * 179.97438 * 24 23 22 39 39 H 1.07989 * 120.00479 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1338 1.2470 0.5957 5 6 3.4866 1.2817 1.9200 6 1 4.1905 2.0212 2.2722 7 6 2.9386 0.3655 2.8093 8 7 1.9407 -0.4014 2.4309 9 14 3.6202 0.2236 4.5427 10 1 4.7339 1.1903 4.7173 11 1 2.5459 0.5230 5.5231 12 1 4.1233 -1.1558 4.7654 13 6 3.2356 2.3595 -0.1582 14 8 2.8423 2.3527 -1.3056 15 6 3.8382 3.6120 0.4244 16 1 4.7853 3.3693 0.9063 17 6 2.8785 4.2073 1.4564 18 8 4.0644 4.5616 -0.6192 19 6 5.1707 5.4344 -0.3811 20 6 5.3156 6.3888 -1.5383 21 6 6.1161 6.0538 -2.6144 22 6 6.2452 6.9273 -3.6781 23 6 5.5822 8.1402 -3.6608 24 6 4.7861 8.4774 -2.5823 25 6 4.6524 7.6016 -1.5212 26 1 -1.0502 -0.0003 -0.0003 27 1 3.0094 -0.0790 -1.0245 28 1 3.0097 -0.8466 0.5814 29 1 1.5583 -1.0413 3.0516 30 1 3.2664 5.1650 1.8033 31 1 1.8999 4.3556 0.9997 32 1 2.7854 3.5255 2.3018 33 1 4.9977 5.9986 0.5353 34 1 6.0823 4.8457 -0.2787 35 1 6.6373 5.1080 -2.6259 36 1 6.8676 6.6640 -4.5205 37 1 5.6868 8.8245 -4.4898 38 1 4.2685 9.4252 -2.5686 39 1 4.0307 7.8652 -0.6784 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000281539728.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:03 Heat of formation + Delta-G solvation = 14.459018 kcal Electronic energy + Delta-G solvation = -22153.802137 eV Core-core repulsion = 18835.896124 eV Total energy + Delta-G solvation = -3317.906014 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 287.131 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.40926 -38.85160 -36.97866 -34.96684 -32.38925 -31.82487 -31.40605 -30.87560 -30.02935 -26.42513 -25.96936 -24.89965 -22.70578 -22.51964 -21.23755 -19.29178 -17.95527 -17.09853 -16.71688 -16.34228 -15.57168 -15.42083 -15.16542 -14.44675 -14.38617 -14.18208 -13.75872 -13.53263 -13.36554 -12.86943 -12.73299 -12.42660 -12.11108 -11.94300 -11.73034 -11.58546 -11.34262 -11.15610 -11.05643 -10.89407 -10.63288 -10.57092 -10.39226 -9.41543 -9.30929 -9.21008 -8.88877 -8.81016 -8.64749 -8.25499 -7.86955 -6.37002 -4.06223 1.30751 1.43352 3.05298 3.15603 3.18303 3.55579 3.74540 3.93472 4.09531 4.33320 4.38475 4.85129 4.86661 4.96686 5.00180 5.11391 5.26853 5.34838 5.47542 5.56106 5.67193 5.68413 5.73885 5.89201 5.95306 5.99923 6.07215 6.36899 6.39420 6.46436 6.50142 6.66949 6.69749 6.87387 6.90310 7.00766 7.23644 7.28683 7.62596 7.68928 8.27676 8.99139 9.06632 9.40502 9.81515 10.60869 Molecular weight = 287.13amu Principal moments of inertia in cm(-1) A = 0.022545 B = 0.003981 C = 0.003635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1241.650063 B = 7030.841099 C = 7701.345669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.278 4.278 2 C -0.093 4.093 3 C 0.247 3.753 4 N -0.441 5.441 5 C -0.344 4.344 6 H 0.099 0.901 7 C 0.039 3.961 8 N -0.856 5.856 9 Si 0.920 3.080 10 H -0.269 1.269 11 H -0.281 1.281 12 H -0.280 1.280 13 C 0.470 3.530 14 O -0.580 6.580 15 C 0.089 3.911 16 H 0.075 0.925 17 C -0.164 4.164 18 O -0.355 6.355 19 C 0.098 3.902 20 C -0.080 4.080 21 C -0.097 4.097 22 C -0.125 4.125 23 C -0.120 4.120 24 C -0.126 4.126 25 C -0.099 4.099 26 H 0.196 0.804 27 H 0.062 0.938 28 H 0.107 0.893 29 H 0.270 0.730 30 H 0.049 0.951 31 H 0.058 0.942 32 H 0.093 0.907 33 H 0.055 0.945 34 H 0.055 0.945 35 H 0.123 0.877 36 H 0.121 0.879 37 H 0.119 0.881 38 H 0.121 0.879 39 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.296 10.903 -3.071 13.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.297 4.297 2 C -0.094 4.094 3 C 0.125 3.875 4 N -0.161 5.161 5 C -0.472 4.472 6 H 0.116 0.884 7 C -0.167 4.167 8 N -0.492 5.492 9 Si 0.746 3.254 10 H -0.193 1.193 11 H -0.207 1.207 12 H -0.205 1.205 13 C 0.257 3.743 14 O -0.463 6.463 15 C 0.029 3.971 16 H 0.092 0.908 17 C -0.222 4.222 18 O -0.274 6.274 19 C 0.021 3.979 20 C -0.080 4.080 21 C -0.115 4.115 22 C -0.143 4.143 23 C -0.138 4.138 24 C -0.144 4.144 25 C -0.117 4.117 26 H 0.213 0.787 27 H 0.080 0.920 28 H 0.125 0.875 29 H 0.081 0.919 30 H 0.068 0.932 31 H 0.077 0.923 32 H 0.111 0.889 33 H 0.073 0.927 34 H 0.073 0.927 35 H 0.141 0.859 36 H 0.139 0.861 37 H 0.137 0.863 38 H 0.139 0.861 39 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 6.895 10.730 -3.708 13.282 hybrid contribution 0.056 -0.191 1.379 1.393 sum 6.951 10.538 -2.330 12.838 Atomic orbital electron populations 1.24143 0.95295 1.02998 1.07294 1.23082 0.94301 0.97643 0.94396 1.18038 0.84323 0.88754 0.96367 1.43554 1.56725 1.06303 1.09567 1.19599 1.25407 1.19489 0.82685 0.88379 1.25350 0.94806 0.96851 0.99711 1.70018 1.20890 1.22323 1.35997 0.85977 0.78825 0.78452 0.82103 1.19287 1.20687 1.20530 1.19964 0.83518 0.83961 0.86823 1.90576 1.52816 1.83737 1.19168 1.21712 0.98930 0.88527 0.87932 0.90756 1.22165 0.99632 1.00583 0.99803 1.88102 1.48549 1.46676 1.44029 1.21349 0.90415 0.91243 0.94883 1.19672 0.97543 0.94625 0.96150 1.21118 0.98263 0.99111 0.93008 1.21130 1.00291 0.94467 0.98421 1.21142 0.97507 0.96934 0.98262 1.21111 0.99405 0.99687 0.94226 1.21082 0.98132 0.93716 0.98796 0.78698 0.92027 0.87549 0.91914 0.93195 0.92327 0.88882 0.92681 0.92669 0.85852 0.86067 0.86273 0.86121 0.85948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.28 -6.54 19.25 29.55 0.57 -5.97 16 2 C -0.09 -2.34 11.31 -37.12 -0.42 -2.76 16 3 C 0.25 6.07 5.03 -6.83 -0.03 6.04 16 4 N -0.44 -10.99 2.60 -117.93 -0.31 -11.30 16 5 C -0.34 -8.24 7.52 -14.93 -0.11 -8.35 16 6 H 0.10 2.18 5.88 -52.49 -0.31 1.87 16 7 C 0.04 0.93 5.09 -17.46 -0.09 0.84 16 8 N -0.86 -21.66 9.13 55.50 0.51 -21.15 16 9 Si 0.92 18.55 29.56 -169.99 -5.03 13.52 16 10 H -0.27 -5.22 7.11 56.52 0.40 -4.82 16 11 H -0.28 -5.79 7.11 56.52 0.40 -5.39 16 12 H -0.28 -5.68 7.11 56.52 0.40 -5.28 16 13 C 0.47 11.72 6.94 -10.99 -0.08 11.65 16 14 O -0.58 -16.33 16.24 -14.14 -0.23 -16.56 16 15 C 0.09 1.84 2.31 -27.88 -0.06 1.77 16 16 H 0.07 1.39 6.89 -51.93 -0.36 1.03 16 17 C -0.16 -3.09 9.22 37.15 0.34 -2.75 16 18 O -0.35 -7.17 9.53 -54.91 -0.52 -7.69 16 19 C 0.10 1.49 5.87 36.00 0.21 1.70 16 20 C -0.08 -1.16 5.51 -104.62 -0.58 -1.73 16 21 C -0.10 -1.31 9.70 -39.58 -0.38 -1.70 16 22 C -0.13 -1.46 10.05 -39.58 -0.40 -1.86 16 23 C -0.12 -1.32 10.05 -39.58 -0.40 -1.72 16 24 C -0.13 -1.44 10.05 -39.59 -0.40 -1.84 16 25 C -0.10 -1.30 9.70 -39.58 -0.38 -1.68 16 26 H 0.20 3.78 7.80 -54.08 -0.42 3.36 16 27 H 0.06 1.46 7.69 -51.93 -0.40 1.06 16 28 H 0.11 2.59 6.58 -51.93 -0.34 2.25 16 29 H 0.27 6.56 8.31 -40.82 -0.34 6.22 16 30 H 0.05 0.77 7.77 -51.93 -0.40 0.37 16 31 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 32 H 0.09 1.83 6.06 -51.93 -0.31 1.52 16 33 H 0.06 0.73 7.72 -51.93 -0.40 0.33 16 34 H 0.06 0.77 8.03 -51.93 -0.42 0.35 16 35 H 0.12 1.56 8.06 -52.49 -0.42 1.13 16 36 H 0.12 1.13 8.06 -52.49 -0.42 0.70 16 37 H 0.12 0.99 8.06 -52.49 -0.42 0.57 16 38 H 0.12 1.08 8.06 -52.49 -0.42 0.65 16 39 H 0.12 1.43 8.06 -52.49 -0.42 1.01 16 LS Contribution 337.15 15.07 5.08 5.08 Total: -1.00 -31.00 337.15 -7.74 -38.74 By element: Atomic # 1 Polarization: 12.76 SS G_CDS: -5.04 Total: 7.72 kcal Atomic # 6 Polarization: -6.15 SS G_CDS: -2.21 Total: -8.36 kcal Atomic # 7 Polarization: -32.65 SS G_CDS: 0.20 Total: -32.45 kcal Atomic # 8 Polarization: -23.50 SS G_CDS: -0.75 Total: -24.25 kcal Atomic # 14 Polarization: 18.55 SS G_CDS: -5.03 Total: 13.52 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -31.00 -7.74 -38.74 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281539728.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.199 kcal (2) G-P(sol) polarization free energy of solvation -30.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.740 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds