Wall clock time and date at job start Tue Mar 31 2020 06:18:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 N 1.46502 * 109.47323 * 205.54813 * 3 2 1 5 5 C 1.37097 * 119.99839 * 96.37398 * 4 3 2 6 6 H 1.08000 * 119.99942 * 155.44179 * 5 4 3 7 7 C 1.38949 * 120.00611 * 335.44568 * 5 4 3 8 8 N 1.31418 * 119.99570 * 349.89249 * 7 5 4 9 9 Si 1.86794 * 120.00487 * 169.89234 * 7 5 4 10 10 H 1.48506 * 109.47027 * 359.97438 * 9 7 5 11 11 H 1.48492 * 109.47344 * 119.99959 * 9 7 5 12 12 H 1.48501 * 109.47382 * 240.00473 * 9 7 5 13 13 C 1.34769 * 119.99781 * 276.38204 * 4 3 2 14 14 O 1.21296 * 120.00191 * 4.79904 * 13 4 3 15 15 C 1.50707 * 119.99774 * 184.79736 * 13 4 3 16 16 H 1.09000 * 109.46606 * 49.33597 * 15 13 4 17 17 C 1.52991 * 109.47283 * 289.32606 * 15 13 4 18 18 O 1.42899 * 109.46773 * 169.32761 * 15 13 4 19 19 C 1.42909 * 113.99941 * 210.00332 * 18 15 13 20 20 C 1.50696 * 109.46922 * 180.02562 * 19 18 15 21 21 C 1.38237 * 119.99858 * 269.71830 * 20 19 18 22 22 C 1.38243 * 119.99663 * 179.76578 * 21 20 19 23 23 C 1.38236 * 120.00055 * 0.51626 * 22 21 20 24 24 C 1.38233 * 119.99681 * 359.74672 * 23 22 21 25 25 C 1.38232 * 120.00751 * 359.97438 * 24 23 22 26 26 H 4.40644 * 5.51400 * 179.97438 * 4 1 2 27 27 H 1.08994 * 109.47415 * 85.54584 * 3 2 1 28 28 H 1.09004 * 109.47212 * 325.54589 * 3 2 1 29 29 H 0.97003 * 119.99759 * 179.97438 * 8 7 5 30 30 H 1.08998 * 109.47130 * 185.72497 * 17 15 13 31 31 H 1.09001 * 109.47613 * 305.72782 * 17 15 13 32 32 H 1.09002 * 109.46957 * 65.73375 * 17 15 13 33 33 H 1.09000 * 109.46791 * 299.99908 * 19 18 15 34 34 H 1.08999 * 109.46876 * 59.99814 * 19 18 15 35 35 H 1.08000 * 120.00029 * 0.02562 * 21 20 19 36 36 H 1.08002 * 119.99775 * 180.23130 * 22 21 20 37 37 H 1.07993 * 119.99633 * 179.71624 * 23 22 21 38 38 H 1.08002 * 119.99765 * 179.97438 * 24 23 22 39 39 H 1.07989 * 120.00479 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1338 1.2470 0.5957 5 6 3.4866 1.2817 1.9200 6 1 4.1905 2.0212 2.2722 7 6 2.9386 0.3655 2.8093 8 7 1.9407 -0.4014 2.4309 9 14 3.6202 0.2236 4.5427 10 1 4.7339 1.1903 4.7173 11 1 2.5459 0.5230 5.5231 12 1 4.1233 -1.1558 4.7654 13 6 3.2356 2.3595 -0.1582 14 8 2.8423 2.3527 -1.3056 15 6 3.8382 3.6120 0.4244 16 1 4.7853 3.3693 0.9063 17 6 2.8785 4.2073 1.4564 18 8 4.0644 4.5616 -0.6192 19 6 5.1707 5.4344 -0.3811 20 6 5.3156 6.3888 -1.5383 21 6 6.1161 6.0538 -2.6144 22 6 6.2452 6.9273 -3.6781 23 6 5.5822 8.1402 -3.6608 24 6 4.7861 8.4774 -2.5823 25 6 4.6524 7.6016 -1.5212 26 1 -1.0502 -0.0003 -0.0003 27 1 3.0094 -0.0790 -1.0245 28 1 3.0097 -0.8466 0.5814 29 1 1.5583 -1.0413 3.0516 30 1 3.2664 5.1650 1.8033 31 1 1.8999 4.3556 0.9997 32 1 2.7854 3.5255 2.3018 33 1 4.9977 5.9986 0.5353 34 1 6.0823 4.8457 -0.2787 35 1 6.6373 5.1080 -2.6259 36 1 6.8676 6.6640 -4.5205 37 1 5.6868 8.8245 -4.4898 38 1 4.2685 9.4252 -2.5686 39 1 4.0307 7.8652 -0.6784 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000281539728.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:02 Heat of formation + Delta-G solvation = -1.407940 kcal Electronic energy + Delta-G solvation = -22154.490180 eV Core-core repulsion = 18835.896124 eV Total energy + Delta-G solvation = -3318.594056 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 287.131 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.91684 -40.13718 -38.46438 -36.90092 -33.94056 -33.58401 -32.96926 -31.78384 -31.53104 -28.28771 -27.15818 -26.69693 -24.30966 -23.45932 -22.23204 -21.12962 -19.75662 -18.58489 -18.42181 -17.55783 -17.16819 -16.66020 -16.39040 -16.07285 -15.91821 -15.89549 -15.21525 -15.01437 -14.34890 -14.25682 -14.08801 -13.85571 -13.79895 -13.43741 -13.35848 -13.02291 -12.91713 -12.79146 -12.44622 -12.30036 -12.01169 -11.89838 -11.77816 -11.25020 -11.15724 -10.75873 -10.56611 -10.15142 -9.81236 -9.80156 -9.72887 -8.20483 -5.96548 0.34550 0.50946 1.44130 1.52199 1.63596 1.85079 2.03308 2.34818 2.43964 2.55849 3.00618 3.13543 3.44223 3.89867 3.91539 3.94789 4.08448 4.15932 4.21530 4.27537 4.30301 4.39607 4.42615 4.66435 4.72336 4.77232 4.85267 4.92525 4.97781 5.08160 5.16485 5.32348 5.40278 5.45608 5.55491 5.60487 5.69766 5.81090 6.10779 6.20360 6.42185 7.11659 7.16107 7.51549 7.92524 8.77484 Molecular weight = 287.13amu Principal moments of inertia in cm(-1) A = 0.022545 B = 0.003981 C = 0.003635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1241.650063 B = 7030.841099 C = 7701.345669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.266 4.266 2 C -0.137 4.137 3 C 0.247 3.753 4 N -0.445 5.445 5 C -0.357 4.357 6 H 0.116 0.884 7 C -0.001 4.001 8 N -0.883 5.883 9 Si 0.990 3.010 10 H -0.251 1.251 11 H -0.286 1.286 12 H -0.282 1.282 13 C 0.451 3.549 14 O -0.625 6.625 15 C 0.098 3.902 16 H 0.093 0.907 17 C -0.154 4.154 18 O -0.383 6.383 19 C 0.094 3.906 20 C -0.107 4.107 21 C -0.118 4.118 22 C -0.131 4.131 23 C -0.120 4.120 24 C -0.130 4.130 25 C -0.113 4.113 26 H 0.232 0.768 27 H 0.058 0.942 28 H 0.102 0.898 29 H 0.269 0.731 30 H 0.087 0.913 31 H 0.036 0.964 32 H 0.084 0.916 33 H 0.076 0.924 34 H 0.063 0.937 35 H 0.121 0.879 36 H 0.143 0.857 37 H 0.150 0.850 38 H 0.147 0.853 39 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.014 12.714 -2.167 15.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.284 4.284 2 C -0.139 4.139 3 C 0.125 3.875 4 N -0.164 5.164 5 C -0.483 4.483 6 H 0.134 0.866 7 C -0.205 4.205 8 N -0.520 5.520 9 Si 0.813 3.187 10 H -0.175 1.175 11 H -0.212 1.212 12 H -0.208 1.208 13 C 0.241 3.759 14 O -0.512 6.512 15 C 0.038 3.962 16 H 0.111 0.889 17 C -0.211 4.211 18 O -0.303 6.303 19 C 0.018 3.982 20 C -0.107 4.107 21 C -0.137 4.137 22 C -0.149 4.149 23 C -0.138 4.138 24 C -0.147 4.147 25 C -0.131 4.131 26 H 0.249 0.751 27 H 0.076 0.924 28 H 0.120 0.880 29 H 0.079 0.921 30 H 0.106 0.894 31 H 0.055 0.945 32 H 0.103 0.897 33 H 0.094 0.906 34 H 0.082 0.918 35 H 0.139 0.861 36 H 0.161 0.839 37 H 0.168 0.832 38 H 0.165 0.835 39 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 7.635 12.549 -2.794 14.953 hybrid contribution -0.195 -0.736 1.013 1.267 sum 7.440 11.813 -1.781 14.074 Atomic orbital electron populations 1.25061 0.96359 1.01355 1.05654 1.23493 0.95176 0.99255 0.95973 1.17982 0.84607 0.88900 0.96057 1.43804 1.56058 1.06388 1.10173 1.20032 1.25873 1.20137 0.82300 0.86622 1.26194 0.94752 0.96180 1.03343 1.70161 1.21932 1.22738 1.37190 0.84912 0.78315 0.78443 0.76982 1.17452 1.21197 1.20764 1.20850 0.83408 0.85227 0.86451 1.90525 1.54935 1.84650 1.21046 1.21579 0.99660 0.86978 0.88001 0.88890 1.22076 0.98305 1.02140 0.98622 1.88068 1.50592 1.47182 1.44423 1.21592 0.89242 0.91004 0.96389 1.19784 0.99026 0.95292 0.96560 1.21305 0.98850 0.99740 0.93763 1.21459 1.00480 0.94517 0.98449 1.21563 0.96348 0.96948 0.98892 1.21487 0.99198 1.00387 0.93658 1.21318 0.98269 0.93674 0.99881 0.75123 0.92421 0.88031 0.92104 0.89403 0.94502 0.89723 0.90583 0.91844 0.86069 0.83885 0.83248 0.83480 0.85084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.27 -12.43 19.25 74.32 1.43 -11.00 16 2 C -0.14 -7.09 11.31 31.12 0.35 -6.74 16 3 C 0.25 12.54 5.03 84.57 0.43 12.96 16 4 N -0.45 -22.58 2.60 -645.42 -1.67 -24.25 16 5 C -0.36 -16.92 7.52 84.04 0.63 -16.29 16 6 H 0.12 4.96 5.88 -2.91 -0.02 4.94 16 7 C 0.00 -0.07 5.09 84.93 0.43 0.36 16 8 N -0.88 -44.86 9.13 21.66 0.20 -44.66 16 9 Si 0.99 37.14 29.56 68.60 2.03 39.17 16 10 H -0.25 -8.67 7.11 99.48 0.71 -7.96 16 11 H -0.29 -10.92 7.11 99.48 0.71 -10.21 16 12 H -0.28 -10.63 7.11 99.48 0.71 -9.92 16 13 C 0.45 23.02 6.94 87.66 0.61 23.62 16 14 O -0.62 -36.51 16.24 15.74 0.26 -36.25 16 15 C 0.10 4.00 2.31 29.85 0.07 4.07 16 16 H 0.09 3.37 6.89 -2.39 -0.02 3.35 16 17 C -0.15 -5.63 9.22 71.98 0.66 -4.96 16 18 O -0.38 -15.48 9.53 -130.16 -1.24 -16.72 16 19 C 0.09 2.78 5.87 71.23 0.42 3.20 16 20 C -0.11 -3.03 5.51 -19.87 -0.11 -3.14 16 21 C -0.12 -3.17 9.70 22.27 0.22 -2.95 16 22 C -0.13 -2.87 10.05 22.27 0.22 -2.65 16 23 C -0.12 -2.32 10.05 22.27 0.22 -2.10 16 24 C -0.13 -2.66 10.05 22.27 0.22 -2.44 16 25 C -0.11 -2.82 9.70 22.27 0.22 -2.60 16 26 H 0.23 8.56 7.80 -4.41 -0.03 8.53 16 27 H 0.06 2.88 7.69 -2.39 -0.02 2.86 16 28 H 0.10 5.14 6.58 -2.38 -0.02 5.12 16 29 H 0.27 13.10 8.31 -92.71 -0.77 12.33 16 30 H 0.09 2.50 7.77 -2.39 -0.02 2.48 16 31 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 32 H 0.08 3.23 6.06 -2.39 -0.01 3.21 16 33 H 0.08 1.88 7.72 -2.39 -0.02 1.86 16 34 H 0.06 1.73 8.03 -2.39 -0.02 1.71 16 35 H 0.12 3.13 8.06 -2.91 -0.02 3.10 16 36 H 0.14 2.38 8.06 -2.91 -0.02 2.35 16 37 H 0.15 1.94 8.06 -2.91 -0.02 1.92 16 38 H 0.15 2.16 8.06 -2.91 -0.02 2.14 16 39 H 0.13 2.88 8.06 -2.92 -0.02 2.86 16 Total: -1.00 -67.89 337.15 6.63 -61.26 By element: Atomic # 1 Polarization: 31.08 SS G_CDS: 1.04 Total: 32.12 kcal Atomic # 6 Polarization: -16.68 SS G_CDS: 6.03 Total: -10.66 kcal Atomic # 7 Polarization: -67.44 SS G_CDS: -1.48 Total: -68.91 kcal Atomic # 8 Polarization: -51.99 SS G_CDS: -0.98 Total: -52.98 kcal Atomic # 14 Polarization: 37.14 SS G_CDS: 2.03 Total: 39.17 kcal Total: -67.89 6.63 -61.26 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281539728.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.849 kcal (2) G-P(sol) polarization free energy of solvation -67.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.257 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds